Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004744.1 Hibiscus syriacus cultivar Beakdansim tig00010706_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77107

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
709--937
52
4.1
55
81
11
245
10
17
36
35
1.84
707--964
52
4.5
59
79
9
218
10
15
38
35
1.82
8887--8993
53
2.0
52
89
5
162
46
6
9
37
1.62
9339--9568
63
3.5
67
79
8
217
37
13
20
28
1.91
9404--9566
32
5.2
32
67
17
108
34
14
21
28
1.93
9396--9555
31
5.1
32
66
17
102
35
15
21
28
1.93
9396--9569
63
2.8
63
87
0
242
36
14
20
28
1.93
17245--17269
6
4.2
6
100
0
50
36
0
0
64
0.94
17814--17972
42
3.7
43
83
5
182
23
16
6
53
1.65
18441--18484
19
2.3
19
84
7
54
40
9
2
47
1.48
18450--18496
23
2.0
23
84
8
60
42
6
2
48
1.40
19560--19595
2
18.0
2
100
0
72
50
0
0
50
1.00
20438--20495
31
1.9
31
86
13
86
60
3
0
36
1.14
20489--20524
16
2.3
16
90
4
56
52
5
5
36
1.48
24747--24798
21
2.3
23
80
6
63
50
0
5
44
1.26
24755--24797
23
2.0
21
86
9
59
48
0
4
46
1.22
30067--30094
2
14.0
2
100
0
56
50
0
0
50
1.00
30616--30655
2
20.5
2
89
5
64
45
0
55
0
0.99
34898--35217
37
8.8
37
70
14
184
44
5
4
45
1.46
34984--35043
29
2.0
30
87
3
86
45
1
3
50
1.28
35048--35183
35
3.8
35
79
11
150
47
6
2
43
1.41
35045--35194
70
2.1
73
84
9
202
46
7
2
44
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35876--36633
164
4.6
165
94
0
1232
24
20
24
30
1.99
40011--40049
20
1.9
21
89
5
62
71
2
12
12
1.24
43007--43332
37
8.8
37
72
13
224
44
5
3
45
1.45
43039--43107
35
1.9
36
85
5
95
43
5
5
44
1.52
43094--43154
29
2.0
31
87
6
90
45
1
3
49
1.28
46701--46727
14
1.9
14
100
0
54
44
7
7
40
1.60
47001--47045
23
2.0
23
90
0
72
40
4
2
53
1.33
47002--47052
23
2.2
23
85
0
66
43
3
1
50
1.31
47040--47108
19
3.6
19
73
21
63
47
1
1
49
1.19
47158--47259
54
1.9
52
86
7
143
49
0
0
49
1.14
47199--47277
31
2.5
32
82
14
92
50
0
2
46
1.14
47225--47271
22
2.1
23
88
4
69
53
0
2
44
1.12
47243--47305
23
2.6
24
78
19
60
47
0
1
50
1.10
47233--47276
22
2.0
22
82
8
54
54
0
2
43
1.12
51768--51806
14
2.8
13
88
7
51
53
2
12
30
1.52
51943--52002
18
3.3
18
73
15
52
51
0
1
46
1.10
52044--52091
14
3.4
14
75
11
53
50
0
0
50
1.00
52067--52119
26
2.0
28
81
7
65
43
1
0
54
1.11
53903--53971
32
2.2
32
82
7
79
60
1
1
36
1.14
54372--54413
2
21.0
2
100
0
84
50
0
0
50
1.00
55241--55354
60
1.9
60
81
3
140
35
15
12
35
1.85
68229--68262
17
2.0
17
100
0
68
29
17
23
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68541--68588
22
2.2
22
84
0
60
27
22
25
25
2.00
68730--68759
2
15.5
2
93
6
53
50
0
0
50
1.00
70937--71105
84
2.0
85
96
1
313
33
23
8
34
1.85

Tables:   1

The End!