genome.fa.s4745.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004745.1 Hibiscus syriacus cultivar Beakdansim tig00010711_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  166578

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2603--2640	18	2.1	18	95	0	67	21	44	0	34	1.52
7075--7141	3	22.7	3	90	3	109	65	1	1	31	1.10
9761--9786	2	13.0	2	100	0	52	50	0	0	50	1.00
13853--14027	88	2.0	88	82	2	217	30	28	18	22	1.97
17692--17724	2	16.5	2	100	0	66	51	0	0	48	1.00
22005--22048	23	1.9	23	86	9	63	50	2	36	11	1.51
23856--23997	36	4.0	36	95	0	250	18	23	23	33	1.96
26260--26435	59	3.0	60	75	4	167	32	20	5	41	1.76
26562--26673	29	3.8	29	72	9	84	38	2	20	38	1.67
30401--30455	28	2.0	28	86	13	78	18	27	18	36	1.94
40299--40498	104	1.9	104	90	0	319	40	6	17	36	1.75
47784--47852	36	1.9	36	96	0	129	42	13	17	27	1.86
49797--49822	2	13.0	2	100	0	52	50	0	0	50	1.00
51001--51029	11	2.6	11	100	0	58	62	0	0	37	0.96
54879--54936	23	2.5	23	78	10	64	50	15	12	22	1.77
59424--59449	2	13.0	2	100	0	52	50	0	0	50	1.00
61812--61862	28	1.9	25	84	11	66	11	13	0	74	1.07
64887--64960	32	2.3	32	83	0	85	35	9	22	32	1.87
65219--65349	64	2.0	64	91	0	208	35	21	11	31	1.89
65426--65541	43	2.7	43	80	0	133	31	28	15	24	1.95
65730--65852	44	2.8	44	87	2	169	32	29	16	21	1.95
72531--72564	3	11.0	3	93	6	59	64	2	0	32	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74199--74294	3	31.7	3	89	2	147	35	3	0	61	1.12
74780--74816	15	2.4	16	86	13	60	78	5	16	0	0.93
74779--74819	17	2.4	18	80	12	50	78	4	17	0	0.93
78296--78348	14	3.7	14	84	2	52	26	13	5	54	1.60
78311--78349	15	2.7	15	92	4	62	23	15	10	51	1.73
83827--84435	83	7.4	83	93	0	981	30	13	21	35	1.91
85075--86724	113	14.6	113	97	0	2952	38	13	19	29	1.89
86976--87067	3	30.7	3	91	0	148	34	3	0	61	1.12
87567--87598	15	2.1	16	94	5	57	78	6	15	0	0.95
90273--90354	22	4.0	21	83	12	98	59	1	0	39	1.05
90267--90355	20	4.2	20	78	14	90	59	1	1	38	1.12
90265--90366	21	4.9	21	78	16	97	58	0	0	39	1.11
90267--90372	22	5.0	22	80	14	82	57	0	0	40	1.11
99789--99816	2	14.0	2	100	0	56	50	0	0	50	1.00
107248--107365	15	7.5	15	82	13	148	45	0	2	51	1.14
107345--107496	32	5.4	32	70	28	155	35	0	11	51	1.43
107368--107410	22	2.0	22	100	0	86	34	0	13	51	1.42
107345--107781	54	8.1	54	83	8	443	34	0	13	51	1.45
107423--107464	22	1.9	22	100	0	84	35	0	14	50	1.43
107390--107876	134	3.6	134	96	1	895	34	0	13	51	1.45
107345--107781	188	2.3	187	88	6	636	34	0	13	51	1.45
107444--107593	80	1.9	80	98	0	291	32	0	15	52	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107525--107630	32	3.6	31	75	23	122	35	0	13	50	1.48
107557--107598	22	1.9	22	100	0	84	35	0	14	50	1.43
107601--107674	22	3.2	22	67	23	53	29	0	17	52	1.45
107578--107727	80	1.9	80	95	2	275	32	0	16	51	1.44
107657--107764	32	3.7	32	74	23	137	34	0	14	50	1.43
107713--107861	80	1.9	80	98	0	289	34	0	12	52	1.40
110120--110151	13	2.5	13	94	0	55	40	0	3	56	1.15
110246--110331	7	12.0	7	72	20	63	30	1	1	67	1.05
110724--110750	10	2.7	10	100	0	54	92	0	0	7	0.38
112427--112507	27	3.0	27	75	15	78	40	2	7	49	1.44
116637--116705	30	2.3	29	80	2	75	55	4	2	37	1.35
118913--118951	17	2.4	17	95	4	71	51	5	0	43	1.24
119069--119094	9	2.9	9	100	0	52	23	7	23	46	1.78
120532--120569	19	2.0	19	89	0	58	52	0	0	47	1.00
125878--125930	26	2.1	25	82	10	63	60	3	3	32	1.32
138924--138957	15	2.3	15	100	0	68	50	5	0	44	1.26
147745--147812	28	2.4	28	80	9	93	48	32	5	13	1.66
147812--147939	28	4.4	28	74	15	125	44	29	8	17	1.78
147957--148022	32	2.1	33	91	5	109	43	22	6	27	1.76
149316--149397	44	1.9	41	87	7	119	31	6	29	32	1.82
149318--149408	19	4.4	20	76	17	105	35	5	28	30	1.80
149817--149907	21	4.4	21	77	5	105	34	25	19	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149787--149958	40	4.3	40	76	11	167	36	20	19	23	1.95
151088--151142	29	1.9	29	85	3	76	45	3	5	45	1.44
152189--152226	16	2.3	16	95	4	67	18	15	5	60	1.53
152769--152842	32	2.3	32	80	17	91	39	2	10	47	1.53
152769--152842	33	2.3	34	80	17	95	39	2	10	47	1.53
154971--155037	24	2.8	24	84	8	75	11	8	46	32	1.72
155020--155147	39	3.3	39	86	0	184	14	10	48	27	1.75
155116--155174	27	2.2	27	90	0	91	15	8	50	25	1.71
155077--155218	66	2.2	66	85	2	187	14	10	47	28	1.77
158961--159002	22	2.0	21	86	13	59	64	7	0	28	1.20
164273--164376	29	3.6	29	89	0	145	18	28	30	22	1.97
164936--165033	43	2.2	43	83	8	117	36	0	13	50	1.42
165188--165234	16	3.0	16	84	9	53	29	0	10	59	1.31
166425--166468	23	2.0	23	86	4	63	38	4	2	54	1.33

Tables:   1

The End!