genome.fa.s4746.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004746.1 Hibiscus syriacus cultivar Beakdansim tig00010712_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  233515

Tables:   1   

This is table  1  of  1  ( 105 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10295--10321	10	2.7	10	100	0	54	25	18	22	33	1.97
17422--17457	18	2.1	18	89	5	56	55	2	0	41	1.14
20932--20975	22	2.0	22	100	0	88	31	0	9	59	1.29
22271--22321	2	26.0	2	92	4	86	50	0	0	49	1.00
22820--22861	16	2.8	16	85	7	52	64	4	9	21	1.42
22928--22987	16	3.8	16	90	0	102	61	21	8	8	1.51
23905--23931	14	1.9	14	100	0	54	59	25	7	7	1.51
28077--28108	17	1.9	17	93	6	57	59	0	0	40	0.97
39109--39168	32	1.9	31	86	3	84	36	30	11	21	1.89
42441--42480	21	1.9	21	100	0	80	27	5	22	45	1.73
43391--43436	23	2.0	23	100	0	92	60	0	8	30	1.26
49968--49996	3	9.7	3	100	0	58	31	34	0	34	1.58
50948--50998	23	2.2	23	92	0	84	27	27	25	19	1.99
69082--69114	15	2.3	15	89	5	50	30	0	0	69	0.88
69379--69405	14	1.9	14	100	0	54	59	3	0	37	1.15
70942--71017	29	2.6	28	77	6	80	31	3	1	63	1.21
70978--71021	21	2.0	22	83	12	56	36	6	0	56	1.26
72685--72768	42	2.0	42	83	4	107	32	29	22	15	1.95
74644--74683	21	1.9	21	94	0	71	30	27	22	20	1.98
75462--75511	2	25.0	2	91	0	82	48	2	0	50	1.12
75495--75582	40	2.3	38	78	4	95	42	4	7	45	1.54
75496--75672	91	1.9	92	83	5	232	44	5	5	45	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75586--75826	37	6.3	36	75	16	202	46	3	4	44	1.43
75593--75770	73	2.4	72	84	8	209	45	3	4	46	1.40
75870--75918	24	2.0	23	81	14	55	55	6	0	38	1.25
77284--77377	49	1.9	49	91	4	154	44	8	17	29	1.78
83960--83991	15	2.1	15	100	0	64	50	12	15	21	1.77
89449--89502	17	3.2	17	72	0	54	31	0	3	64	1.11
91025--91072	21	2.3	21	85	0	60	25	39	12	22	1.89
91076--91148	21	3.5	21	87	7	103	16	34	27	21	1.95
91671--91834	33	4.9	34	85	3	224	56	3	2	37	1.30
91668--91834	67	2.5	67	98	0	316	55	3	2	38	1.31
91669--91841	34	5.2	33	82	8	215	55	4	2	38	1.31
92225--92799	128	4.5	128	98	0	1118	32	19	25	23	1.98
92225--92799	254	2.3	255	98	1	1107	32	19	25	23	1.98
94109--94157	24	2.0	24	100	0	98	16	24	18	40	1.90
101753--101784	3	11.0	3	93	6	57	68	0	31	0	0.90
105867--105925	2	29.5	2	100	0	118	49	0	0	50	1.00
106305--106332	14	2.0	14	100	0	56	35	0	14	50	1.43
108843--108894	21	2.5	22	87	9	81	44	26	0	28	1.55
119865--119893	2	14.5	2	100	0	58	51	0	0	48	1.00
125296--125616	103	3.1	103	96	0	579	25	13	24	36	1.92
125633--125700	23	3.0	23	91	0	100	20	27	26	25	1.99
128229--128291	33	1.9	33	90	0	99	25	14	15	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132212--132251	19	2.0	21	90	9	66	55	0	2	42	1.13
133177--133214	15	2.5	15	91	0	58	13	68	13	5	1.37
146143--146451	43	7.2	42	84	4	350	32	18	24	24	1.97
150101--150280	82	2.2	83	82	8	217	33	18	18	28	1.95
150167--150281	41	2.8	41	73	12	110	32	19	22	26	1.97
154122--154169	21	2.3	21	96	0	87	41	12	18	27	1.86
164163--164197	15	2.4	15	90	4	54	2	14	0	82	0.77
165912--165940	14	2.1	14	100	0	58	44	6	13	34	1.71
170549--170609	31	2.0	31	90	0	95	40	4	9	44	1.59
170633--170675	22	2.0	22	100	0	86	51	9	0	39	1.34
170635--170683	22	2.2	22	88	3	71	55	10	0	34	1.34
170655--170788	30	4.3	30	76	18	114	50	6	0	43	1.28
170706--170765	15	4.0	15	86	0	84	48	1	0	50	1.11
170989--171107	20	5.9	19	79	9	105	40	26	17	15	1.90
171102--171179	41	1.9	41	97	0	147	17	21	25	34	1.96
171265--171297	6	5.5	6	100	0	66	33	51	15	0	1.43
171974--172014	5	8.2	5	100	0	82	0	19	41	39	1.52
172095--172194	20	5.0	20	82	0	119	23	24	17	36	1.95
172226--172279	20	2.7	20	94	0	90	11	18	18	51	1.74
172266--172316	19	2.6	20	90	3	77	15	17	23	43	1.88
172964--173412	229	2.0	227	94	0	790	45	7	7	39	1.61
173478--173523	20	2.3	19	89	10	74	54	10	17	17	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173643--173689	20	2.4	19	82	10	67	53	10	17	19	1.72
173652--173694	20	2.3	19	88	11	63	51	11	16	20	1.75
175921--175985	21	3.1	21	80	6	69	40	15	29	15	1.88
176019--176079	32	1.9	32	89	0	95	29	0	47	22	1.52
177873--177921	19	2.6	19	93	0	80	30	2	10	57	1.43
178040--179595	395	3.9	395	96	1	2869	36	15	16	31	1.90
178040--179595	197	7.9	198	96	1	2873	36	15	16	31	1.90
181059--181129	12	5.9	12	83	6	81	36	7	35	21	1.80
181056--181129	6	12.3	6	80	0	67	37	6	35	20	1.79
181071--181142	3	24.0	3	74	5	65	37	4	34	23	1.74
181059--181129	36	2.0	36	91	5	117	36	7	35	21	1.80
181056--181142	18	5.0	18	74	13	83	37	5	34	21	1.78
181059--181142	12	7.2	12	80	12	77	36	5	34	22	1.79
182601--183299	183	3.8	183	96	0	1283	35	14	16	33	1.89
182601--183299	365	1.9	365	96	0	1290	35	14	16	33	1.89
185765--185829	25	2.6	25	80	0	85	35	9	13	41	1.77
186505--186555	25	2.0	25	88	0	75	33	7	17	41	1.79
186944--186980	18	2.1	18	89	0	56	32	5	10	51	1.60
186936--186982	24	2.0	24	86	0	67	34	4	14	46	1.64
187239--187325	39	2.2	39	91	0	138	49	18	13	18	1.80
187727--187799	23	3.2	23	84	0	92	34	4	20	41	1.72
189567--189794	43	5.3	43	90	0	339	26	21	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
189630--189862	43	5.4	43	82	5	141	27	21	21	29	1.98
189548--189843	86	3.4	86	84	2	292	27	20	22	29	1.99
189547--189842	129	2.3	129	80	4	330	27	19	22	29	1.98
189782--189878	43	2.3	43	83	7	117	37	22	18	21	1.95
189990--190048	21	2.8	21	84	0	64	55	20	3	20	1.57
191389--191456	16	4.4	16	72	20	56	38	32	0	29	1.58
194296--194637	41	8.3	41	78	9	342	34	18	19	27	1.95
194272--194637	82	4.4	83	82	7	458	33	18	19	28	1.95
194272--194637	165	2.2	164	86	3	486	33	18	19	28	1.95
196877--196901	2	12.5	2	100	0	50	52	0	0	48	1.00
200694--200760	4	16.0	4	76	17	57	68	2	0	28	1.04
201462--201542	32	2.6	30	74	14	83	33	9	4	51	1.56
202733--202770	19	2.0	20	89	5	60	52	0	0	47	1.00
202736--202773	17	2.2	17	90	4	58	55	0	0	44	0.99
211735--211775	20	2.0	21	85	9	57	60	7	2	29	1.36
221098--221201	49	2.1	49	98	0	199	23	25	17	34	1.96
233451--233500	24	2.1	24	81	7	57	40	4	4	52	1.39

Tables:   1

The End!