genome.fa.s4748.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004748.1 Hibiscus syriacus cultivar Beakdansim tig00010719_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120464

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1437--1523	20	4.4	20	86	1	104	49	18	18	13	1.80
2014--2139	20	6.4	20	76	13	118	19	15	23	41	1.89
2702--2763	31	1.9	33	83	6	83	38	11	3	46	1.56
5967--6025	31	1.9	31	96	0	109	27	3	11	57	1.50
7170--7215	21	2.4	19	82	13	58	28	10	10	50	1.71
7175--7224	21	2.4	21	86	0	73	36	10	10	44	1.72
11431--11496	34	1.9	34	84	6	89	40	3	9	46	1.51
15613--15699	26	3.3	26	100	0	174	39	16	10	34	1.82
17017--17127	18	5.9	18	78	8	114	25	29	23	21	1.99
17028--17130	38	2.7	38	95	0	179	26	29	21	23	1.99
18353--18391	19	2.1	19	85	0	51	25	23	15	35	1.94
22238--22302	20	3.3	20	80	6	80	27	27	20	24	1.99
22227--22303	20	4.0	20	78	10	70	24	27	23	24	2.00
25639--25673	16	2.1	16	94	5	61	57	5	0	37	1.23
27015--27063	22	2.2	22	85	7	64	40	32	0	26	1.56
27329--27371	18	2.4	18	88	0	59	46	2	51	0	1.13
27677--27723	22	2.1	22	84	4	58	55	10	0	34	1.35
28690--29234	276	2.0	272	85	5	746	40	14	5	39	1.69
34236--34278	14	3.1	14	79	0	50	67	0	18	13	1.23
39137--39245	49	2.2	49	80	4	123	40	7	12	39	1.71
39311--39451	50	2.8	50	75	4	140	42	5	12	39	1.67
39716--39767	21	2.5	21	81	6	61	19	17	26	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41362--41798	54	8.1	54	75	14	377	52	12	0	34	1.39
41411--41453	22	2.0	22	100	0	86	51	13	0	34	1.42
41299--41753	134	3.4	134	95	0	822	52	13	0	34	1.43
41413--41461	22	2.2	22	88	3	71	55	14	0	30	1.40
41416--41563	80	1.9	80	98	0	287	52	13	0	33	1.41
41467--41541	22	3.2	23	71	17	73	54	14	0	30	1.41
41550--41699	80	1.9	80	97	0	282	53	13	0	33	1.40
41362--41800	188	2.3	187	87	7	608	52	12	0	34	1.39
41679--41721	22	2.0	22	100	0	86	51	13	0	34	1.42
41681--41783	22	4.2	22	70	23	71	54	13	0	32	1.40
41778--41909	15	8.5	15	78	13	133	49	2	0	48	1.13
41778--41909	29	4.2	30	79	15	151	49	2	0	48	1.13
41777--41909	44	2.8	45	84	10	153	48	2	0	48	1.13
41821--41932	30	3.9	28	84	5	102	46	1	0	51	1.11
42871--42921	23	2.2	23	100	0	102	35	7	27	29	1.85
43281--43890	252	2.4	249	88	9	876	40	20	13	26	1.88
47431--47468	20	1.9	20	88	0	58	10	26	36	26	1.89
47450--47510	20	3.0	20	80	4	68	16	26	32	24	1.96
55397--55437	19	2.2	19	90	0	64	19	41	19	19	1.91
63986--64022	19	1.9	19	88	0	56	21	32	24	21	1.98
65213--65255	20	2.0	20	86	8	59	25	32	2	39	1.69
68228--68453	66	3.4	66	91	0	355	35	14	19	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75357--75569	66	3.2	66	93	0	363	36	13	18	30	1.90
80865--80904	2	20.0	2	100	0	80	0	50	0	50	1.00
82962--83021	16	3.8	16	75	14	54	71	0	13	15	1.14
83253--83346	30	3.1	30	76	4	100	15	4	18	61	1.49
83343--83419	23	3.2	23	88	7	100	23	18	18	40	1.91
83332--83419	27	3.4	27	92	6	139	21	17	19	42	1.90
83390--83454	34	1.9	34	81	6	78	23	16	18	41	1.90
83424--83477	23	2.3	23	80	0	63	22	16	16	44	1.86
85819--85936	49	2.4	48	77	1	137	37	8	15	38	1.78
86120--86162	21	2.0	21	86	0	59	20	11	23	44	1.84
100196--100235	21	1.9	21	89	0	62	55	10	7	27	1.60
110918--110967	24	2.1	24	96	0	91	44	12	10	34	1.75
114433--114472	17	2.4	16	88	8	62	0	12	2	85	0.71
117578--117651	24	3.1	24	94	0	130	41	12	12	33	1.79
119643--119834	80	2.4	80	83	0	240	27	21	13	36	1.91
119770--119855	40	2.2	40	86	0	118	29	23	10	37	1.88
119700--119927	119	1.9	120	83	2	298	28	19	13	39	1.89

Tables:   1

The End!