Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004749.1 Hibiscus syriacus cultivar Beakdansim tig00010720_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53078

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
320--410
3
31.7
3
77
8
91
25
0
6
68
1.14
326--430
6
17.5
6
80
7
79
21
0
9
68
1.18
326--425
9
11.1
9
77
12
89
22
0
9
69
1.16
7133--7213
30
2.6
30
92
3
135
30
16
18
34
1.93
8191--8220
2
15.0
2
100
0
60
50
0
0
50
1.00
8962--9007
25
2.0
23
87
12
67
41
6
0
52
1.27
10053--10089
19
2.0
18
89
5
56
70
10
2
16
1.27
11011--11075
22
2.8
23
86
4
87
18
15
9
56
1.65
11452--11492
19
2.2
19
86
8
57
46
0
0
53
1.00
11881--11905
13
1.9
13
100
0
50
40
0
0
60
0.97
16578--16641
14
4.5
14
76
3
56
28
31
20
20
1.97
17385--17469
32
2.7
32
96
3
154
18
27
31
22
1.97
20181--20235
23
2.4
23
96
3
103
12
14
9
63
1.51
21079--21153
38
2.0
38
91
0
123
22
9
26
41
1.84
24730--24776
12
3.8
12
91
5
67
29
25
8
36
1.86
27237--27276
21
1.9
21
94
0
71
37
15
27
20
1.92
27252--28351
299
3.7
305
81
6
1237
28
16
18
37
1.92
26939--28351
611
2.3
603
81
4
1646
28
16
17
37
1.91
33626--33669
16
2.9
15
83
6
61
45
11
13
29
1.79
33767--33832
21
3.1
21
100
0
132
18
36
27
18
1.94
33872--33924
21
2.5
21
93
0
88
28
28
22
20
1.99
34120--34174
13
4.2
13
75
13
58
49
12
3
34
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34160--34258
33
3.0
33
94
1
164
45
15
7
32
1.73
34253--34292
21
1.9
21
94
0
71
47
7
15
30
1.72
36597--36636
12
3.0
13
82
17
55
20
17
15
47
1.83
36597--36636
15
2.9
14
85
14
57
20
17
15
47
1.83
46516--47094
228
2.5
227
83
2
721
18
25
27
29
1.98
47579--47604
5
5.2
5
100
0
52
23
0
0
76
0.78

Tables:   1

The End!