genome.fa.s475.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000475.1 Hibiscus syriacus cultivar Beakdansim tig00000884_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86751

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1792--1847	22	2.7	21	76	13	62	26	16	26	30	1.96
5419--5455	2	18.5	2	94	0	65	48	2	0	48	1.15
5757--5852	30	3.2	30	92	1	140	31	26	20	21	1.98
6273--6307	15	2.3	15	90	0	52	34	22	0	42	1.54
8254--8294	21	2.0	21	86	13	59	39	7	2	51	1.43
10205--10414	65	3.3	63	77	9	201	26	17	24	31	1.97
11941--11970	15	1.9	16	93	6	53	53	20	0	26	1.46
12457--12492	3	12.0	3	93	0	63	69	0	30	0	0.89
19425--19475	24	2.1	24	81	0	57	35	29	21	13	1.92
22268--24445	726	3.0	725	93	0	3674	26	23	15	34	1.95
24941--25093	76	2.0	77	97	1	290	52	12	3	30	1.57
24962--25081	38	3.2	38	65	21	106	52	10	5	32	1.56
26019--26121	34	3.0	34	98	0	197	32	14	24	29	1.95
26471--26652	89	2.1	89	94	1	321	40	7	7	44	1.60
34563--34633	25	2.8	25	75	10	81	36	4	1	57	1.27
34691--34828	2	70.5	2	74	14	119	44	5	2	48	1.36
43640--43665	2	13.0	2	100	0	52	50	0	0	50	1.00
45723--45817	31	3.1	31	80	3	111	34	21	17	26	1.95
46415--46567	65	2.3	66	84	6	186	28	16	18	35	1.94
50568--50694	64	2.0	66	87	6	188	28	16	18	36	1.93
53964--54071	31	3.5	31	78	6	96	36	22	17	24	1.95
54668--54818	63	2.3	64	83	10	184	27	17	19	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55904--56926	421	2.4	420	90	2	1566	50	8	11	29	1.67
55904--56926	210	4.8	211	91	2	1556	50	8	11	29	1.67
56951--57064	2	56.5	2	74	11	99	47	0	5	46	1.31
56954--57100	70	2.1	70	83	7	183	45	2	6	45	1.42
57203--57257	22	2.5	22	88	5	67	43	0	7	49	1.30
57259--57306	7	6.9	7	80	0	60	20	0	33	45	1.52
57259--57306	21	2.3	21	92	0	78	20	0	33	45	1.52
57329--57401	20	3.4	20	79	17	83	38	8	1	52	1.40
57342--57401	25	2.7	23	80	16	72	36	8	1	53	1.41
57369--57514	18	7.7	18	72	20	111	43	7	6	43	1.58
57369--57554	33	5.2	33	73	20	124	43	8	5	43	1.58
57405--57549	18	7.7	20	68	25	84	43	8	6	40	1.63
57391--57521	38	3.3	40	77	18	139	44	7	6	41	1.58
57544--57671	2	62.0	2	72	17	93	42	3	4	49	1.42
57385--57568	80	2.3	82	80	14	222	43	7	5	43	1.56
57511--57693	68	2.6	70	84	9	221	42	6	4	46	1.50
57493--57628	33	4.1	33	77	11	159	41	8	5	44	1.58
57493--57674	101	1.8	99	84	10	239	41	6	5	46	1.51
57715--57960	33	7.5	33	78	13	258	43	6	6	43	1.57
57739--57971	18	13.1	18	68	16	146	44	6	6	42	1.57
57845--57959	58	2.0	58	94	0	203	41	6	7	43	1.60
57958--58015	26	2.3	25	82	8	64	53	3	3	39	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58030--58167	62	2.2	61	84	3	179	50	4	9	36	1.55
61327--61422	31	3.1	31	77	5	104	34	20	18	26	1.96
62020--62171	64	2.3	66	83	9	188	28	16	19	35	1.94
63004--63053	23	2.1	24	92	3	84	46	4	0	50	1.20
63322--63377	16	3.4	16	95	2	94	39	14	28	17	1.89
63663--63720	24	2.4	24	88	0	80	39	18	15	25	1.91
72763--72849	7	12.7	7	69	9	54	35	0	0	64	0.94
72753--72858	33	3.2	33	90	2	176	38	0	0	61	0.96
73914--74069	78	2.0	79	94	1	278	33	14	12	39	1.84
78924--78961	19	2.0	19	100	0	76	47	15	15	21	1.82

Tables:   1

The End!