Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004750.1 Hibiscus syriacus cultivar Beakdansim tig00010721_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88094

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7293--7328
14
2.5
15
91
8
58
36
0
0
63
0.94
7288--7328
14
2.9
14
86
10
57
31
2
0
65
1.05
7297--7329
15
2.2
15
94
0
57
42
0
0
57
0.98
10069--10558
177
2.8
170
82
4
554
37
22
10
29
1.88
17416--17446
2
15.5
2
100
0
62
48
0
0
51
1.00
17706--17818
35
3.2
34
87
5
154
43
22
0
33
1.59
18868--18979
35
3.2
34
89
2
161
34
1
22
41
1.64
20040--20089
24
2.0
24
84
7
64
44
6
0
50
1.26
21504--21587
42
2.0
42
100
0
168
33
11
28
26
1.92
29599--29756
60
2.6
60
79
7
160
32
21
2
43
1.66
29934--30060
61
2.1
60
82
7
150
42
4
18
33
1.72
34747--34817
31
2.3
31
85
4
90
22
21
21
35
1.96
40925--40949
6
4.2
6
100
0
50
48
52
0
0
1.00
42159--42329
91
1.9
91
84
4
229
36
10
15
36
1.82
42463--42505
21
2.0
21
95
0
77
6
13
9
69
1.35
46332--46438
51
2.1
51
94
0
187
31
14
16
37
1.89
48623--48653
2
16.0
2
93
6
55
51
0
0
48
1.00
54660--54697
20
1.9
20
88
0
58
21
26
10
42
1.85
57984--58060
18
4.4
17
76
12
57
42
1
2
53
1.23
57986--58045
18
3.2
20
80
15
67
46
1
1
50
1.21
58091--58192
30
2.9
33
72
22
84
50
4
2
42
1.39
58143--58191
15
3.3
15
83
11
64
48
8
2
40
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58683--58739
2
28.5
2
80
7
62
43
1
1
52
1.21
59035--59091
2
28.0
2
92
3
96
50
1
0
47
1.11
59316--59363
20
2.5
20
86
3
62
47
4
8
39
1.53
59332--59393
2
30.0
2
80
6
52
48
9
1
40
1.46
59482--59536
14
3.9
14
80
7
67
50
25
0
23
1.49
59475--59548
21
3.5
21
75
5
78
51
25
0
22
1.48
60776--60868
14
6.6
14
80
4
80
48
29
1
21
1.57
60789--60864
7
10.9
7
76
10
66
50
28
0
21
1.49
60789--60868
21
3.8
21
79
9
74
50
28
0
21
1.49
61304--61342
16
2.4
16
91
0
60
38
15
25
20
1.92
67818--67888
24
2.9
24
87
6
90
39
14
19
26
1.90
67833--67888
24
2.3
24
96
0
103
37
16
19
26
1.92
68449--68510
30
2.1
30
93
0
106
29
20
14
35
1.93
73348--73502
60
2.6
59
75
10
161
33
17
5
43
1.73
73660--73751
28
3.1
27
69
22
69
38
7
20
33
1.81
73768--73859
29
3.2
28
72
6
76
44
2
16
36
1.60
73763--73877
58
2.0
58
84
0
149
44
4
16
34
1.68
76601--76666
32
2.1
32
97
0
123
37
10
22
28
1.88
78865--78891
13
2.1
13
100
0
54
55
7
14
22
1.64
79114--79152
19
2.1
19
90
0
60
56
0
2
41
1.13
82901--83061
78
2.1
78
93
0
277
49
13
13
23
1.77
85927--86080
60
2.6
60
80
3
159
44
3
18
33
1.68

Tables:   1

The End!