genome.fa.s4751.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004751.1 Hibiscus syriacus cultivar Beakdansim tig00010723_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  218802

Tables:   1   

This is table  1  of  1  ( 108 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14438--14476	16	2.5	16	95	4	71	58	10	5	25	1.51
17181--17241	32	1.9	32	86	3	88	52	11	16	19	1.74
17905--18019	21	5.6	21	71	8	92	18	20	26	35	1.95
17901--18042	41	3.5	41	89	3	232	18	19	24	37	1.94
17926--18039	20	5.6	20	74	8	104	15	21	24	38	1.92
17901--18067	82	2.0	83	96	1	309	17	19	23	38	1.93
18151--18214	6	10.7	6	98	0	110	29	53	17	0	1.44
18702--18767	6	11.5	6	98	1	111	0	16	53	30	1.44
18851--18916	19	3.3	19	68	12	60	42	19	19	18	1.90
18866--18937	22	3.4	22	69	11	78	38	23	19	18	1.93
18844--19025	41	4.4	40	81	13	201	39	22	19	19	1.93
18929--19001	20	3.6	20	79	3	92	39	23	21	15	1.91
18860--19019	83	1.9	82	84	10	211	38	22	21	17	1.93
18926--19051	21	6.1	21	72	10	107	37	25	19	18	1.94
25400--25620	30	7.4	30	85	0	298	44	7	15	33	1.74
28693--28727	10	3.4	10	88	4	52	28	0	2	68	1.04
28640--28739	45	2.2	46	84	10	125	33	6	1	60	1.28
30453--30486	10	3.4	10	87	0	50	20	5	0	73	1.04
39901--39940	21	1.9	21	89	0	62	85	10	2	2	0.80
40721--41496	105	7.4	105	95	0	1264	32	24	18	23	1.97
43092--43126	10	3.4	10	88	4	52	28	0	2	68	1.04
43040--43146	51	2.1	52	82	8	130	34	6	0	57	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47819--47932	30	3.8	30	92	2	176	28	13	11	47	1.77
50874--50900	14	1.9	14	100	0	54	29	0	0	70	0.88
58912--58952	15	2.7	15	96	0	73	46	12	19	21	1.82
64942--64995	20	2.8	20	86	8	67	70	7	5	16	1.30
78179--78253	35	2.1	35	92	0	123	33	29	28	9	1.88
78335--78420	23	3.7	23	81	3	109	38	19	15	26	1.91
79565--79600	18	2.0	18	88	0	54	30	16	0	52	1.44
89936--89986	2	25.5	2	100	0	102	50	0	0	49	1.00
90240--90267	14	2.0	14	100	0	56	35	0	7	57	1.26
91917--91950	13	2.7	12	86	13	50	38	0	0	61	0.96
93399--93472	20	3.7	20	80	3	94	39	18	22	18	1.93
93396--93491	41	2.3	41	96	0	174	40	17	22	18	1.91
93416--93491	21	3.7	21	75	3	82	40	18	23	17	1.91
93488--93573	20	4.2	20	77	2	82	33	24	18	23	1.97
93477--93554	41	1.9	41	83	0	102	41	21	15	21	1.90
94139--94189	19	2.7	19	93	0	75	11	19	21	47	1.81
94172--94259	33	2.6	33	92	1	140	13	27	20	38	1.90
94238--94284	20	2.3	20	75	13	51	14	25	12	46	1.80
94784--94828	18	2.5	18	85	0	63	15	15	42	26	1.87
96147--96184	20	1.9	20	88	0	58	50	21	15	13	1.78
96429--96472	22	2.0	22	95	0	79	18	15	45	20	1.85
96640--96735	20	4.6	22	71	12	69	22	16	21	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96640--96754	41	2.8	41	81	2	133	21	18	21	38	1.94
96723--96774	21	2.5	21	84	3	70	17	23	19	40	1.91
99404--99455	26	2.0	26	84	3	68	65	11	17	5	1.44
101121--101252	61	2.2	62	81	8	146	38	11	9	40	1.73
101149--101291	60	2.4	60	81	5	164	37	13	9	39	1.76
102449--102482	17	1.9	18	88	5	52	50	5	5	38	1.51
105435--105488	26	2.1	27	86	6	76	29	14	5	50	1.66
107064--107093	13	2.3	13	94	0	51	70	0	0	30	0.88
107608--107697	43	2.2	40	82	9	101	45	7	2	44	1.45
107699--107971	40	7.2	39	70	17	132	40	6	3	48	1.48
107699--107960	76	3.5	75	79	10	205	40	6	3	48	1.48
107699--107919	76	2.9	72	80	10	221	41	6	4	47	1.49
107820--107960	38	3.8	38	71	13	130	40	8	2	48	1.48
107982--108006	2	12.5	2	100	0	50	52	0	0	48	1.00
108105--108134	16	1.9	16	93	6	53	40	0	0	60	0.97
111686--111730	20	2.2	20	80	7	56	26	20	31	22	1.98
112191--112285	47	2.0	47	100	0	190	53	14	14	16	1.73
119505--119575	21	3.0	23	80	14	74	60	4	2	32	1.30
128006--128109	31	3.4	31	75	7	95	40	4	12	42	1.64
128691--128743	3	17.7	3	96	0	97	32	0	1	66	1.03
131283--131442	81	2.1	78	85	11	215	18	21	28	30	1.97
131527--131565	13	2.9	13	81	7	51	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131527--131621	29	3.5	28	79	16	119	43	0	1	55	1.06
131505--131621	52	2.2	53	92	4	193	44	0	0	53	1.12
131505--131596	24	3.7	24	81	16	114	46	1	0	52	1.07
131617--131678	19	3.3	19	78	15	58	37	1	0	61	1.06
132038--132069	9	3.6	9	95	0	55	59	9	0	31	1.29
132152--132211	31	1.9	31	93	0	102	43	10	6	40	1.64
134067--134105	4	9.5	4	83	5	51	2	25	43	28	1.68
134067--134104	17	2.3	17	81	4	51	2	26	44	26	1.67
138016--138151	50	2.7	50	89	0	200	21	25	21	32	1.98
145983--146017	18	1.9	18	94	0	61	5	14	28	51	1.65
152588--152634	2	23.5	2	82	0	58	42	0	57	0	0.98
154117--154284	84	2.0	84	85	2	230	23	16	23	36	1.94
162124--162148	13	1.9	13	100	0	50	24	0	24	52	1.48
161812--162190	201	1.9	202	90	4	609	38	13	19	27	1.90
162008--162313	117	2.6	117	87	6	402	38	15	19	26	1.91
162028--162313	123	2.4	117	90	4	430	39	15	19	25	1.90
161804--162514	324	2.2	324	97	1	1343	38	14	19	27	1.91
162535--162564	4	7.5	4	100	0	60	26	0	23	50	1.50
162124--162727	209	2.9	200	83	8	727	37	13	20	28	1.90
162538--162771	115	2.0	115	86	6	326	39	14	19	26	1.90
164186--164318	68	2.0	68	95	0	239	36	18	16	28	1.93
165959--166321	181	2.0	181	100	0	726	28	24	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166381--166483	4	25.8	4	89	0	134	42	0	32	25	1.55
166381--166483	12	8.6	12	95	0	152	42	0	32	25	1.55
167622--167698	31	2.5	31	82	2	100	28	31	25	14	1.95
167575--167698	63	2.0	63	82	6	153	26	29	27	16	1.97
168591--168650	19	3.3	19	83	4	61	20	25	36	18	1.94
168624--168708	10	8.7	10	69	13	61	30	27	24	17	1.97
168660--168708	20	2.4	21	93	6	84	30	24	28	16	1.96
174953--175027	31	2.4	30	82	4	96	29	32	24	14	1.95
174905--175027	62	2.0	63	82	7	153	26	29	26	17	1.97
175903--175945	22	2.0	22	100	0	86	9	23	48	18	1.76
175942--176040	9	10.3	9	73	10	63	29	26	26	18	1.98
175948--176041	19	4.9	18	74	11	71	29	26	24	19	1.98
175967--176042	29	2.6	30	89	2	127	28	25	25	21	1.99
183806--184076	136	2.0	135	94	0	470	25	18	9	46	1.79
190013--190044	2	16.0	2	100	0	64	50	0	0	50	1.00
201265--201525	130	2.0	130	88	3	391	40	15	13	31	1.86
202213--202250	19	2.0	19	85	10	51	47	0	5	47	1.24
206848--207077	44	5.3	44	89	2	358	30	23	28	16	1.97
208294--208437	64	2.2	64	97	1	270	28	24	10	36	1.88
218536--218592	29	2.0	29	85	0	78	63	3	14	19	1.44

Tables:   1

The End!