Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004753.1 Hibiscus syriacus cultivar Beakdansim tig00010728_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100961

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5599--5723
66
1.9
66
86
0
178
11
28
25
35
1.90
13483--13537
23
2.4
23
78
0
65
29
12
18
40
1.87
14343--14418
35
2.2
35
88
2
109
36
3
6
52
1.46
14863--15016
41
3.7
41
79
6
166
21
16
23
38
1.93
14886--15016
41
3.1
41
82
8
174
20
16
22
40
1.91
15957--16139
41
4.5
41
87
2
235
39
24
20
16
1.92
15957--16111
82
1.9
82
95
0
283
40
23
20
14
1.90
15956--16139
82
2.2
81
89
4
280
39
23
20
16
1.91
17761--17787
14
1.9
14
100
0
54
51
0
0
48
1.00
17755--17788
14
2.5
13
86
9
50
50
2
0
47
1.16
27384--27425
19
2.2
19
86
0
57
47
0
2
50
1.14
27403--27454
21
2.5
21
82
14
63
51
0
0
48
1.00
27405--27470
25
2.8
23
76
21
57
51
1
1
45
1.19
27420--27462
21
2.0
22
82
13
54
53
0
2
44
1.13
28116--28203
25
3.5
25
68
17
65
59
4
2
34
1.30
28074--28146
19
3.7
20
76
10
78
50
0
1
47
1.09
28112--28153
21
2.0
21
81
9
50
54
0
2
42
1.13
33371--34064
55
12.7
55
87
1
948
28
28
14
27
1.95
41446--41478
16
1.9
17
88
11
50
36
0
3
60
1.12
41441--41480
17
2.3
19
79
16
50
32
0
2
65
1.06
43231--43297
33
2.0
33
88
5
100
17
43
17
20
1.88
43766--43839
34
2.2
34
81
11
82
21
2
13
62
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43777--43853
34
2.2
34
84
11
95
20
1
16
61
1.42
45006--45069
22
3.0
21
84
4
83
28
21
25
25
1.99
49720--49748
13
2.1
14
93
6
51
72
0
0
27
0.85
50232--50281
16
3.0
16
91
5
73
36
6
30
28
1.81
52172--52205
17
2.0
17
88
0
50
29
0
0
70
0.87
55434--55462
15
1.9
15
100
0
58
20
37
20
20
1.94
62699--62778
31
2.6
30
86
4
106
38
17
25
18
1.92
64323--64350
2
14.0
2
100
0
56
50
0
0
50
1.00
66359--66393
17
2.1
17
89
10
54
40
20
5
34
1.76
66418--66468
21
2.4
21
93
0
84
43
27
7
21
1.80
67117--67175
29
2.0
29
100
0
118
23
13
13
49
1.78
76169--76235
23
2.9
24
86
4
93
13
17
19
49
1.80
76175--76251
23
3.4
22
82
7
82
12
18
19
49
1.79
76820--76856
16
2.2
17
90
4
58
27
2
0
70
1.01
85028--85074
23
2.0
23
84
8
60
55
10
10
23
1.65
85285--85353
2
34.5
2
100
0
138
49
0
0
50
1.00
85438--85502
34
1.9
34
93
3
114
38
1
7
52
1.40
91534--91579
20
2.2
21
84
3
58
17
2
6
73
1.14
92021--92060
18
2.3
18
91
4
64
17
25
17
40
1.91
92361--92400
18
2.2
18
90
0
62
37
0
5
57
1.21
93523--93700
98
1.8
95
93
3
311
46
9
7
36
1.66
94649--94752
51
2.0
51
92
0
172
17
22
15
45
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
99882--99911
15
2.0
15
100
0
60
40
20
20
20
1.92

Tables:   1

The End!