genome.fa.s4754.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004754.1 Hibiscus syriacus cultivar Beakdansim tig00010729_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89412

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79--132	12	4.4	12	77	13	56	59	0	1	38	1.08
79--131	25	2.1	25	89	6	81	60	0	1	37	1.08
91--131	13	3.2	13	83	16	59	63	0	0	36	0.95
1023--1111	32	2.8	30	80	9	106	30	4	19	46	1.69
1023--1099	32	2.4	32	89	2	111	31	3	19	45	1.68
6015--6039	2	12.5	2	100	0	50	52	0	0	48	1.00
6039--6065	2	13.5	2	100	0	54	51	0	48	0	1.00
7371--7409	12	3.2	12	88	0	60	58	0	33	7	1.26
7375--7411	3	12.3	3	94	0	56	59	0	35	5	1.20
13583--13621	18	2.2	18	90	9	62	56	0	0	43	0.99
14971--15058	3	29.7	3	71	11	56	59	1	2	37	1.18
15000--15048	18	2.7	17	90	6	62	57	2	2	38	1.22
15333--15443	58	1.9	58	90	3	179	33	20	9	36	1.86
15393--15883	124	4.0	124	93	1	801	26	18	14	40	1.89
15393--15883	249	2.0	247	91	2	799	26	18	14	40	1.89
15809--16015	114	1.8	113	87	6	312	28	18	13	40	1.87
17172--17206	18	1.9	18	94	0	61	57	2	5	34	1.37
17550--17623	28	2.7	28	78	2	78	5	17	1	75	1.06
17585--17618	12	2.8	12	90	4	50	0	11	2	85	0.71
28240--28302	27	2.4	26	84	7	74	58	1	4	34	1.29
28258--28314	27	2.1	27	80	6	62	59	0	8	31	1.28
31122--31182	29	2.1	30	84	3	79	37	4	21	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38211--38289	4	19.8	4	92	0	131	48	22	2	26	1.64
40157--40189	17	1.9	17	88	11	50	27	3	6	63	1.32
40681--40727	23	2.1	23	84	7	62	34	14	14	36	1.88
40654--40901	130	1.9	130	90	0	397	35	12	15	36	1.86
41297--41369	35	2.1	35	89	0	110	35	1	24	38	1.64
49057--49146	2	48.0	2	70	12	66	48	0	0	51	1.00
51662--51829	60	2.8	60	82	4	196	40	5	20	32	1.77
60743--60783	14	3.0	13	86	10	55	29	2	0	68	1.03
60744--60803	21	2.7	21	87	10	75	26	5	0	68	1.10
67474--67533	31	1.9	31	96	0	111	43	5	6	45	1.52
82085--82111	2	13.5	2	100	0	54	0	48	0	51	1.00
83679--83731	21	2.4	23	81	9	65	49	0	0	50	1.00
83733--83773	21	2.0	21	85	0	55	60	0	2	36	1.10
83813--83898	27	3.1	27	70	18	70	47	0	3	48	1.18
83912--83956	23	2.0	23	86	0	63	53	2	2	42	1.25
83980--84043	25	2.6	24	73	22	62	46	1	0	51	1.10

Tables:   1

The End!