genome.fa.s4755.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004755.1 Hibiscus syriacus cultivar Beakdansim tig00010732_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67773

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19391--19469	2	39.5	2	100	0	158	50	0	0	49	1.00
21095--21153	7	8.9	7	94	5	97	0	23	45	30	1.53
21214--21313	41	2.5	39	80	7	110	33	21	17	29	1.95
27634--27694	33	1.9	31	83	12	79	40	0	1	57	1.08
29071--29140	34	2.1	32	89	5	104	22	30	15	31	1.95
29420--29461	21	2.0	21	95	0	75	26	28	21	23	1.99
29567--29633	19	3.5	19	91	0	89	35	13	10	40	1.79
29698--29788	31	3.0	31	96	3	168	42	17	6	32	1.75
29849--29909	2	30.5	2	100	0	122	49	0	0	50	1.00
35133--35270	21	6.7	21	71	6	77	36	24	17	21	1.94
35237--35390	20	7.7	20	79	7	159	37	25	18	18	1.94
35772--35842	33	2.2	33	92	0	115	11	22	18	47	1.80
35922--36013	21	4.6	20	77	6	105	45	17	23	13	1.83
35921--36016	41	2.4	40	85	1	129	45	16	25	12	1.82
35974--36010	19	1.9	19	100	0	74	48	18	21	10	1.78
36058--36114	14	3.7	14	75	20	60	8	24	22	43	1.81
36041--36133	33	2.8	33	98	0	177	9	21	21	47	1.79
36036--36141	19	6.1	19	73	20	106	10	22	19	47	1.80
37837--38488	185	3.5	185	98	1	1272	21	12	19	45	1.84
37837--38488	92	7.1	93	98	0	1267	21	12	19	45	1.84
38536--38664	19	7.3	19	73	17	116	45	27	17	9	1.78
38572--38664	33	2.8	32	90	4	141	46	26	18	8	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38536--38664	52	2.5	52	72	14	131	45	27	17	9	1.78
38660--38778	19	6.8	19	75	18	123	10	20	22	47	1.80
38682--38738	14	3.7	14	72	20	51	10	21	22	45	1.82
38665--38757	33	2.8	33	95	0	168	10	20	21	47	1.80
40714--40750	14	2.6	14	86	0	56	32	0	18	48	1.49
40857--40934	19	4.4	19	76	20	96	44	17	23	14	1.85
40875--40952	34	2.4	33	93	4	131	41	19	26	12	1.87
40943--41111	19	9.7	19	75	19	172	15	21	18	44	1.86
40943--41111	52	3.2	52	92	4	270	15	21	18	44	1.86
40949--41125	33	5.2	33	73	16	164	14	21	18	45	1.84
43547--43593	24	2.0	24	87	8	69	38	21	14	25	1.92
44274--44583	20	15.5	20	87	1	352	20	17	24	37	1.94
44570--44652	21	4.0	21	73	6	78	25	16	24	33	1.96
44550--44648	42	2.4	43	77	11	100	21	18	23	37	1.94
50549--50595	24	2.0	24	86	0	67	51	0	2	46	1.13
58091--58147	30	1.9	30	85	7	80	38	24	29	7	1.82
58377--58435	24	2.5	24	97	0	109	37	15	16	30	1.90
59711--59757	19	2.6	19	93	6	80	72	4	0	23	1.02
59906--59942	16	2.3	16	95	0	65	35	8	21	35	1.83
59991--60052	23	2.7	23	97	0	115	37	8	17	37	1.80
60165--60812	198	3.3	198	86	3	867	30	15	15	38	1.89
60930--61203	91	3.0	91	89	4	430	44	13	13	28	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65501--65544	23	2.0	22	82	13	54	50	0	2	47	1.13

Tables:   1

The End!