genome.fa.s4757.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004757.1 Hibiscus syriacus cultivar Beakdansim tig00010736_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106207

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1291--1352	6	10.3	6	89	6	99	48	0	50	1	1.10
2466--2515	20	2.4	20	83	6	55	14	8	36	42	1.74
2477--2515	20	1.9	21	89	5	62	12	10	38	38	1.78
13506--13536	2	15.5	2	100	0	62	48	0	0	51	1.00
26010--26070	24	2.5	24	84	5	79	13	8	14	63	1.50
39291--39352	27	2.1	29	82	11	74	53	4	4	37	1.44
45834--45878	19	2.4	18	81	7	54	37	15	0	46	1.46
46716--46841	66	1.9	66	96	0	234	38	17	8	34	1.81
49943--50002	2	30.0	2	100	0	120	50	0	0	50	1.00
51159--51192	10	3.4	10	95	0	59	20	2	0	76	0.92
60575--60670	50	1.9	50	86	0	138	47	14	22	14	1.81
61407--61866	105	4.4	105	98	0	884	33	25	18	23	1.97
63242--63267	2	13.0	2	100	0	52	50	0	0	50	1.00
63556--63625	2	35.0	2	100	0	140	50	0	0	50	1.00
65522--65568	23	2.0	23	87	0	67	36	6	6	51	1.53
66510--66560	26	2.0	26	84	7	68	43	3	1	50	1.31
67689--67837	38	4.1	38	77	17	131	32	6	14	47	1.68
67710--67768	29	2.0	29	90	0	91	35	3	11	49	1.56
67738--67837	19	5.2	19	71	7	85	33	7	14	46	1.71
67737--67843	38	2.8	38	85	1	142	32	8	13	45	1.73
67901--67961	21	3.2	18	71	15	50	36	1	13	49	1.52
68099--68175	28	2.8	27	83	13	86	41	19	1	37	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68864--68897	15	2.2	15	89	5	50	20	23	20	35	1.96
70681--70849	43	4.0	43	83	2	198	20	21	17	40	1.91
71346--71401	28	2.0	28	92	0	94	28	21	25	25	1.99
74765--74816	23	2.3	23	89	0	77	5	53	7	32	1.53
77246--77296	15	3.4	15	91	0	84	5	15	68	9	1.36
83207--83261	2	27.5	2	100	0	110	49	0	0	50	1.00
87746--87776	2	16.0	2	93	6	55	51	0	0	48	1.00
90477--90501	2	12.5	2	100	0	50	48	0	0	52	1.00
96013--96121	31	3.5	32	79	3	114	33	6	13	46	1.69
96035--96146	31	3.6	31	79	10	115	35	9	10	43	1.73
104301--104473	27	6.0	28	82	12	217	47	29	8	14	1.74
104302--104452	59	2.6	60	90	3	245	46	31	7	14	1.73
104301--104473	59	3.0	55	81	13	215	47	29	8	14	1.74
105291--105831	79	6.9	79	86	2	734	24	15	23	36	1.93
105324--105831	155	3.2	156	87	3	709	24	15	23	36	1.93

Tables:   1

The End!