Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004758.1 Hibiscus syriacus cultivar Beakdansim tig00010737_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62154

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4716--4758
21
2.0
21
91
8
70
23
25
18
32
1.97
7356--7398
21
2.0
21
82
8
52
39
4
23
32
1.75
8024--8069
21
2.2
21
84
0
56
8
17
21
52
1.71
10120--10148
10
2.7
11
89
10
51
37
0
0
62
0.96
10401--10475
30
2.5
29
87
10
107
26
4
2
66
1.22
10693--10783
29
3.2
29
79
4
87
51
0
6
41
1.28
10717--10783
27
2.4
28
85
5
82
56
0
5
37
1.24
10782--10811
15
1.9
16
93
6
53
46
0
3
50
1.18
10624--11200
188
3.0
188
85
8
749
49
2
6
42
1.39
10878--10950
29
2.4
31
80
13
89
52
0
4
43
1.20
10905--10971
29
2.3
29
89
5
100
55
0
7
37
1.28
10972--11001
15
1.9
16
93
6
53
46
0
3
50
1.18
11251--11304
28
1.9
28
92
0
90
59
0
3
37
1.15
11398--11449
2
26.0
2
96
0
95
51
0
0
48
1.00
11611--11666
5
11.6
5
73
7
53
58
0
0
41
0.98
11600--11670
19
3.7
19
100
0
142
57
0
0
42
0.98
13137--13189
25
2.2
24
83
10
63
41
7
1
49
1.42
19104--19206
41
2.5
40
79
4
107
35
13
16
33
1.88
34160--34415
41
6.2
41
78
4
237
28
20
17
33
1.95
34124--34415
83
3.5
81
76
6
239
29
19
17
33
1.95
34180--34440
124
2.1
125
83
3
330
27
21
18
32
1.97
34654--34726
33
2.2
33
97
0
137
8
10
28
52
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38152--38503
43
8.2
43
81
5
331
23
21
21
33
1.97
38152--38503
85
4.1
85
80
8
369
23
21
21
33
1.97
56325--56355
15
2.1
15
100
0
62
12
19
35
32
1.90
56340--56495
31
5.2
31
87
6
205
19
17
23
38
1.93
57025--57081
21
2.7
21
97
0
105
24
12
33
29
1.92
57143--57181
20
2.0
20
89
0
60
25
15
20
38
1.92
57580--57622
20
2.2
20
83
8
52
44
6
0
48
1.29

Tables:   1

The End!