genome.fa.s476.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000476.1 Hibiscus syriacus cultivar Beakdansim tig00000888_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64951

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4081--4110	14	2.1	14	93	0	51	43	6	0	50	1.28
12152--12234	29	2.8	29	92	1	139	43	9	14	32	1.78
15598--15627	15	2.0	15	93	0	51	20	0	23	56	1.42
16922--17004	29	2.8	29	92	1	139	43	9	14	32	1.78
17687--17748	18	3.7	18	69	18	62	45	16	12	25	1.83
17695--17759	32	2.0	32	93	0	112	46	16	13	23	1.83
19417--19450	4	8.5	4	93	0	59	26	2	23	47	1.66
24193--24381	65	2.9	65	93	1	308	31	13	22	32	1.93
29411--29457	23	2.1	23	84	4	60	31	10	8	48	1.68
32796--32842	20	2.3	20	92	0	85	14	27	21	36	1.93
32808--32850	20	2.2	20	87	4	61	18	25	18	37	1.94
33357--33408	22	2.3	23	83	3	61	26	15	13	44	1.84
35299--35377	40	2.0	40	85	5	106	21	13	15	49	1.79
35231--35627	178	2.3	169	86	5	526	21	16	18	44	1.87
36057--36091	18	2.1	17	89	10	54	34	11	8	45	1.71
38499--38668	60	2.8	60	85	2	200	44	4	18	33	1.69
38641--38687	19	2.4	19	86	10	60	48	4	14	31	1.63
40160--40223	19	3.2	21	80	10	80	78	9	1	10	1.04
40160--40223	10	6.4	10	84	12	78	78	9	1	10	1.04
43990--44031	21	2.0	21	85	0	57	35	7	7	50	1.57
47252--47335	36	2.3	35	78	9	89	50	10	11	27	1.72
53654--53680	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62467--62624	64	2.5	64	83	6	178	27	18	19	33	1.96

Tables:   1

The End!