genome.fa.s4761.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004761.1 Hibiscus syriacus cultivar Beakdansim tig00010740_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96856

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2790--2848	20	3.0	20	87	5	84	18	35	30	15	1.92
2814--2899	34	2.5	35	88	3	138	20	33	26	18	1.96
2841--2897	15	3.5	15	72	25	53	21	33	24	21	1.97
3011--3052	21	2.0	21	90	0	66	23	19	28	28	1.98
3081--3120	20	1.9	21	85	10	55	37	37	10	15	1.80
3335--3404	34	2.1	32	86	5	95	31	12	31	24	1.93
6164--6297	72	1.9	72	87	1	198	37	17	16	28	1.92
6163--6314	72	2.1	72	82	2	189	36	19	16	27	1.93
9772--9834	31	2.0	31	90	6	101	9	26	12	50	1.71
19289--19693	165	2.5	165	92	0	648	34	6	34	24	1.81
28974--29014	8	5.2	8	82	5	57	34	0	29	36	1.58
29082--29683	126	4.8	126	96	1	1120	22	25	20	32	1.98
29082--29683	250	2.4	251	97	0	1118	22	25	20	32	1.98
30070--30168	33	3.0	34	82	4	130	39	3	4	53	1.35
30692--30752	21	2.9	21	97	0	113	21	22	37	18	1.94
30692--30773	42	2.0	42	82	4	103	23	24	34	18	1.96
30783--30830	21	2.3	21	85	0	60	22	12	39	25	1.89
32549--32625	34	2.4	31	84	8	91	61	1	0	37	1.05
36627--36718	34	2.7	35	83	3	91	60	16	7	15	1.56
36646--36692	24	2.0	24	86	0	67	65	17	4	12	1.40
36656--36686	14	2.2	14	94	0	53	64	19	6	9	1.45
40078--40313	28	8.3	26	75	15	136	35	7	2	55	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40089--40336	29	8.6	29	74	11	197	37	7	1	53	1.39
40090--40326	57	4.1	56	83	7	298	36	8	1	53	1.40
40078--40326	114	2.2	116	91	2	405	35	7	2	55	1.40
40320--40358	15	2.4	17	83	12	55	46	5	0	48	1.24
50244--50398	36	4.3	36	90	3	231	36	24	20	19	1.95
50243--50432	36	5.2	36	87	1	229	36	23	19	21	1.95
50813--51119	53	5.8	51	83	6	321	32	20	23	23	1.98
50803--51156	51	6.6	53	82	7	362	33	20	22	24	1.97
51124--51650	55	9.7	55	85	3	667	31	14	25	28	1.95
51124--51650	108	4.8	108	89	1	752	31	14	25	28	1.95
56976--57024	15	3.2	15	80	13	55	63	14	4	18	1.46
60409--60586	95	1.9	95	97	0	338	39	9	16	33	1.81
63009--63049	2	21.5	2	85	9	59	48	2	0	48	1.14
63217--63270	25	2.0	25	82	10	63	29	1	3	64	1.21
63504--63565	18	3.3	18	66	16	54	58	6	4	30	1.44
63722--63780	25	2.3	24	94	5	91	32	15	13	38	1.86
65358--65400	22	1.9	23	85	4	61	51	4	6	37	1.50
67958--68005	23	2.1	23	96	0	87	39	35	20	4	1.72
73753--73816	29	2.2	30	88	8	96	32	7	1	57	1.37
73956--74032	28	2.6	29	69	16	68	48	2	6	42	1.42
77245--77298	2	27.0	2	96	0	99	50	1	0	48	1.11
78617--78658	22	1.9	23	85	9	61	26	11	0	61	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95362--95750	203	2.0	193	86	9	534	56	5	8	30	1.50
95610--95648	10	3.8	10	82	3	51	53	7	0	38	1.30
95613--95648	12	3.2	12	81	18	51	55	5	0	38	1.23

Tables:   1

The End!