Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004763.1 Hibiscus syriacus cultivar Beakdansim tig00010743_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62859

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
99--196
42
2.4
41
78
1
106
24
23
23
28
2.00
1--591
214
2.8
214
92
2
966
32
15
19
31
1.93
314--414
42
2.4
42
83
1
123
24
23
22
28
1.99
4293--4362
35
2.0
35
91
0
113
37
15
15
31
1.89
4295--4370
35
2.2
35
87
0
107
39
18
14
27
1.90
8864--8933
27
2.8
26
79
18
85
54
0
4
41
1.20
8881--8945
22
2.9
22
75
25
64
53
0
4
41
1.21
8890--8935
19
2.2
21
88
11
69
54
0
4
41
1.20
9194--9285
39
2.4
39
81
3
114
44
2
15
38
1.58
9773--9809
2
18.5
2
100
0
74
51
0
0
48
1.00
11021--11047
2
13.5
2
100
0
54
51
0
0
48
1.00
15185--15229
17
2.6
17
75
0
54
42
0
0
57
0.98
25090--26761
4
430.8
4
82
10
1645
0
19
47
32
1.50
27180--27213
15
2.3
15
89
0
50
32
23
35
8
1.86
27192--27331
45
3.1
45
78
8
176
27
11
37
23
1.89
27300--27387
44
2.0
44
84
0
113
25
11
37
26
1.89
27339--27476
72
1.9
71
91
1
222
23
13
36
25
1.92
27410--27684
30
9.4
29
76
10
141
22
10
38
28
1.87
27410--27684
57
4.7
59
78
8
240
22
10
38
28
1.87
27410--27689
87
3.2
87
88
4
386
23
10
38
28
1.87
27470--27689
30
7.4
30
80
7
207
23
9
38
28
1.85
29251--29303
16
3.1
16
86
13
63
47
0
18
33
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29439--29512
37
2.0
36
82
7
87
47
4
1
47
1.29
31081--31119
3
13.0
3
100
0
78
66
0
0
33
0.92
31118--31149
3
10.7
3
100
0
64
34
0
0
65
0.93
32874--32917
14
3.1
14
96
0
79
31
0
0
68
0.90
33325--33349
11
2.3
11
100
0
50
60
0
0
40
0.97
33764--33789
3
8.7
3
100
0
52
34
0
0
65
0.93
33799--33830
2
16.0
2
100
0
64
50
0
0
50
1.00
36244--36276
2
16.5
2
100
0
66
48
0
0
51
1.00
41060--41100
9
5.0
8
86
13
57
0
14
2
82
0.76
42868--42898
12
2.6
12
100
0
62
16
0
0
83
0.64
42909--43014
39
2.7
39
79
13
128
35
16
2
45
1.62
50522--50562
23
1.9
21
85
14
57
36
0
9
53
1.34
53901--53942
22
2.0
22
85
4
59
28
33
28
9
1.88
54540--54617
31
2.5
31
78
12
79
23
20
21
34
1.97
54590--54688
30
3.3
30
92
1
155
21
22
26
30
1.99
54961--55022
2
31.0
2
93
0
106
48
1
1
48
1.21
59336--59400
31
2.1
31
82
5
78
23
20
21
35
1.96
59386--59484
30
3.3
30
91
1
146
21
21
26
31
1.98
60639--60677
15
2.6
15
83
0
51
7
15
48
28
1.72
62117--62200
18
4.8
17
76
14
82
65
5
1
27
1.23
62618--62859
4
60.5
4
86
0
259
40
23
9
26
1.85

Tables:   1

The End!