Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004769.1 Hibiscus syriacus cultivar Beakdansim tig00010752_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69593

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
133--192
29
2.0
31
93
6
106
43
16
6
33
1.74
1417--1460
23
1.9
23
86
9
63
40
6
6
45
1.57
3230--3288
30
2.0
30
93
3
102
33
3
16
45
1.64
8375--8418
21
2.1
21
82
0
52
9
38
15
36
1.80
13978--14072
23
4.4
21
77
11
86
29
25
18
26
1.98
20736--20766
16
2.0
16
93
6
55
58
3
0
38
1.15
29347--29677
161
2.0
168
93
5
579
36
17
19
25
1.94
31033--31113
40
2.0
40
100
0
162
39
9
18
32
1.84
31555--31595
10
4.1
10
83
0
55
9
12
19
58
1.61
31555--31592
20
1.9
20
94
0
67
7
13
21
57
1.60
35635--35696
30
2.1
30
96
0
115
54
11
9
24
1.65
37851--37911
20
2.9
21
76
14
63
22
21
32
22
1.98
37690--38400
132
5.4
132
89
0
1068
31
21
21
25
1.98
37987--38043
22
2.7
22
78
10
66
22
26
31
19
1.98
37690--38384
263
2.6
262
90
0
1059
31
21
21
25
1.98
39785--39847
28
2.2
28
88
0
90
20
7
34
36
1.82
40484--40573
6
13.4
7
81
18
88
0
12
0
87
0.54
40496--40579
11
7.0
12
82
11
102
0
10
0
89
0.49
40484--40579
16
5.8
16
83
12
106
0
12
0
87
0.54
40500--40561
1
62.0
1
86
0
88
0
6
0
93
0.35
40534--40598
32
2.0
32
81
0
76
3
15
3
78
1.00
43120--43151
6
5.2
6
92
7
55
50
15
15
18
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43120--43151
13
2.6
12
90
9
55
50
15
15
18
1.79
50909--50948
20
2.0
21
85
5
55
45
0
0
55
0.99
52541--52572
16
2.0
16
93
0
55
6
9
3
81
0.97
53628--53682
21
2.5
24
80
19
66
38
0
32
29
1.58
54199--54242
21
2.1
21
83
8
54
65
18
0
15
1.27
54740--54816
32
2.4
32
100
0
154
5
27
38
28
1.78
61681--61897
109
2.0
109
80
6
244
16
12
20
50
1.77
62222--62271
24
2.1
24
85
7
66
14
6
12
68
1.39
62865--62911
21
2.2
21
80
0
58
21
27
14
36
1.93
63630--63697
20
3.4
20
87
0
82
17
16
23
42
1.88
63664--63707
20
2.2
20
87
0
61
15
13
18
52
1.75
65571--65679
20
5.5
20
92
2
148
34
22
20
22
1.96
65571--65681
39
2.8
40
87
1
161
34
23
20
21
1.97
65723--65809
20
4.3
20
92
0
138
21
19
20
37
1.94
66292--66396
21
5.0
21
72
3
86
21
37
18
22
1.94
66319--66399
42
1.9
42
82
5
101
22
38
18
20
1.94
67172--67293
19
6.6
19
84
11
173
14
21
17
46
1.83
67178--67278
33
2.9
34
85
11
132
14
20
17
46
1.84
67200--67330
52
2.5
52
89
1
199
15
22
18
44
1.86
67302--67395
20
4.7
20
89
2
145
19
22
24
34
1.97

Tables:   1

The End!