Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000477.1 Hibiscus syriacus cultivar Beakdansim tig00000889_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80591

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4139--4217
31
2.5
31
100
0
158
30
22
3
43
1.71
9446--9485
14
2.9
14
84
0
53
40
30
5
25
1.77
9982--10050
22
3.0
22
81
10
75
46
4
0
49
1.21
9982--10064
22
3.3
24
77
17
73
45
3
0
50
1.19
11379--11467
40
2.2
40
97
0
169
35
19
20
24
1.95
11914--11962
12
4.1
12
100
0
98
16
32
8
42
1.77
11914--11962
6
8.2
6
83
0
62
16
32
8
42
1.77
18050--18078
9
3.2
9
100
0
58
48
20
10
20
1.79
18089--18479
185
2.1
186
93
1
671
45
8
3
42
1.51
20283--20330
21
2.3
20
75
3
51
62
0
0
37
0.95
29662--29806
71
2.0
71
90
1
227
37
19
24
17
1.93
29667--29806
36
3.9
35
84
2
181
36
20
25
18
1.95
30429--30500
30
2.4
30
83
0
81
40
6
2
50
1.44
37140--37384
105
2.3
104
83
2
285
34
15
22
27
1.94
50163--50281
58
2.1
58
100
0
238
28
10
16
43
1.82
50685--50720
18
1.9
19
94
5
65
61
8
5
25
1.46
56793--56817
4
6.2
4
100
0
50
24
0
0
76
0.80
58331--58400
34
2.1
32
86
5
95
21
31
14
32
1.93
58684--58725
21
2.0
21
95
0
75
26
28
21
23
1.99
58761--58804
21
2.1
21
100
0
88
13
27
45
13
1.81
58830--58910
21
4.1
21
75
19
84
12
27
40
19
1.87
58854--58883
15
2.0
15
100
0
60
13
26
33
26
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58832--58904
36
2.0
37
89
2
112
13
27
38
20
1.90
61858--61927
34
2.1
32
84
5
86
22
30
14
32
1.94
62211--62252
21
2.0
21
95
0
75
26
28
21
23
1.99
62288--62331
21
2.1
21
100
0
88
13
27
45
13
1.81
62358--62438
21
4.1
21
75
19
84
12
27
40
19
1.87
62382--62411
15
2.0
15
100
0
60
13
26
33
26
1.93
62360--62432
36
2.0
37
89
2
112
13
27
38
20
1.90
66027--66100
37
2.0
36
84
7
96
47
2
1
48
1.24
66022--66102
38
2.2
37
80
13
94
49
2
1
46
1.23
66546--66632
30
2.7
30
87
8
111
50
16
12
20
1.77
73957--74018
24
2.6
24
86
0
88
14
29
29
27
1.95
76911--76971
25
2.5
24
78
7
68
36
11
0
52
1.38
77157--77239
32
2.8
28
73
21
87
65
2
3
28
1.22

Tables:   1

The End!