Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004771.1 Hibiscus syriacus cultivar Beakdansim tig00010754_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97958
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:3176 original size:40 final size:41
Alignment explanation
Indices: 3129--3215 Score: 122
Period size: 40 Copynumber: 2.1 Consensus size: 41
3119 CTCAAAATTC
* *
3129 GGATCGGATTCGGGTCAGGTGGATGG-TATATTTTCGGATT
1 GGATCGGATTCAGGTAAGGTGGATGGATATATTTTCGGATT
* *
3169 TGATCGGATTCAGGTAAGGTGTATGGTATATATTTTCGGATT
1 GGATCGGATTCAGGTAAGGTGGATGG-ATATATTTTCGGATT
3211 GGATC
1 GGATC
3216 AGGTCGGTTC
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 22 0.55
42 18 0.45
ACGTcount: A:0.21, C:0.09, G:0.33, T:0.37
Consensus pattern (41 bp):
GGATCGGATTCAGGTAAGGTGGATGGATATATTTTCGGATT
Found at i:6821 original size:2 final size:2
Alignment explanation
Indices: 6814--6854 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
6804 TGAATTAATA
6814 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6855 GGGATAGTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:10581 original size:86 final size:86
Alignment explanation
Indices: 10424--10581 Score: 237
Period size: 86 Copynumber: 1.8 Consensus size: 86
10414 GTGATTATAG
* *
10424 CTACTTTTAGGTTGACATGTTCAATAGATATGGTCTCTTGACAATAGATTTAACTCTGGCAGTTT
1 CTACTTTTAGGTTGACATGTTCAATAGATATGGTCTCTTGACAATAGATTTAACTCTGACAGGTT
*
10489 ATGTGGGTATGTCAGAGGTAA
66 ACGTGGGTATGTCAGAGGTAA
** * *
10510 CTACTTTTAGGTTGGTATGTTCAATAGATATGGTCTGC-TGACAATAGATTTAATTCTGATAGGT
1 CTACTTTTAGGTTGACATGTTCAATAGATATGGTCT-CTTGACAATAGATTTAACTCTGACAGGT
10574 TACGTGGG
65 TACGTGGG
10582 CCTATCGGAG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
86 63 0.98
87 1 0.02
ACGTcount: A:0.26, C:0.12, G:0.24, T:0.38
Consensus pattern (86 bp):
CTACTTTTAGGTTGACATGTTCAATAGATATGGTCTCTTGACAATAGATTTAACTCTGACAGGTT
ACGTGGGTATGTCAGAGGTAA
Found at i:17180 original size:163 final size:169
Alignment explanation
Indices: 16815--17187 Score: 551
Period size: 170 Copynumber: 2.2 Consensus size: 169
16805 ATCAAAAAAT
* * *
16815 ATGTCACCATATGTAAAAGCTTAAGCTTTAATATGAGTATGTGCCTACATATAACCATCCTTACC
1 ATGTCACCATAGGTAAAAGCTTAAGCTTTAATACGAGTATGTGCCAACATATAACCATCC-TACC
** * * *
16880 TGAATGAATACACAGTGCAAGCATATGAAACATAAATCAAGATGCCGTATTTAAACCGGTAATCA
65 CAAATGAACACACAGTACAAGCATATGAAACATAAATCAAGAAGCCGTATTTAAACCGGTAATCA
16945 AAAACAGTAACGAATAACAATACTCCACTTGCTAGCTAATAACA
130 AAAAC---AACG-ATAACAATACTCCACTTGCTAGCTAATAACA
*
16989 ATGTCACCATAGGTAAAAGCTTAAGCTTTAATACGAGTATGTGCCAACATCTAACC-T-C-ACCC
1 ATGTCACCATAGGTAAAAGCTTAAGCTTTAATACGAGTATGTGCCAACATATAACCATCCTACCC
* *
17051 AAATGAGCACACGGTACAAGCATATGAAACATAAATCAAGAAGCCGTATTTAAACCGGTAATCAA
66 AAATGAACACACAGTACAAGCATATGAAACATAAATCAAGAAGCCGTATTTAAACCGGTAATCAA
17116 AAAC-A-G-TAACAATACTCCACTTGCTAGCTAATAACA
131 AAACAACGATAACAATACTCCACTTGCTAGCTAATAACA
*
17152 ATGTCACCATAGGTAAAAACTTAAGCTTTAATACGA
1 ATGTCACCATAGGTAAAAGCTTAAGCTTTAATACGA
17188 ATACACGACA
Statistics
Matches: 187, Mismatches: 12, Indels: 11
0.89 0.06 0.05
Matches are distributed among these distances:
163 65 0.35
165 1 0.01
166 1 0.01
170 66 0.35
172 1 0.01
173 1 0.01
174 52 0.28
ACGTcount: A:0.41, C:0.21, G:0.14, T:0.24
Consensus pattern (169 bp):
ATGTCACCATAGGTAAAAGCTTAAGCTTTAATACGAGTATGTGCCAACATATAACCATCCTACCC
AAATGAACACACAGTACAAGCATATGAAACATAAATCAAGAAGCCGTATTTAAACCGGTAATCAA
AAACAACGATAACAATACTCCACTTGCTAGCTAATAACA
Found at i:17202 original size:163 final size:166
Alignment explanation
Indices: 16897--17207 Score: 502
Period size: 163 Copynumber: 1.9 Consensus size: 166
16887 ATACACAGTG
*
16897 CAAGCATATGAAACATAAATCAAGATGCCGTATTTAAACCGGTAATCAAAAACAGTAACGAATAA
1 CAAGCATATGAAACATAAATCAAGAAGCCGTATTTAAACCGGTAATCAAAAAC---AACG-ATAA
* *
16962 CAATACTCCACTTGCTAGCTAATAACAATGTCACCATAGGTAAAAGCTTAAGCTTTAATACGAGT
62 CAATACTCCACTTGCTAGCTAATAACAATGTCACCATAGGTAAAAACTTAAGCTTTAATACGAAT
*** *
17027 ATGTGCCAACATCTAACCTCACCCAAATGAGCACACGGTA
127 ACACGACAACATCTAACCTCACCCAAATGAGCACACGGTA
17067 CAAGCATATGAAACATAAATCAAGAAGCCGTATTTAAACCGGTAATCAAAAAC-A-G-TAACAAT
1 CAAGCATATGAAACATAAATCAAGAAGCCGTATTTAAACCGGTAATCAAAAACAACGATAACAAT
17129 ACTCCACTTGCTAGCTAATAACAATGTCACCATAGGTAAAAACTTAAGCTTTAATACGAATACAC
66 ACTCCACTTGCTAGCTAATAACAATGTCACCATAGGTAAAAACTTAAGCTTTAATACGAATACAC
17194 GACAACATCTAACC
131 GACAACATCTAACC
17208 GTACTCACCT
Statistics
Matches: 134, Mismatches: 7, Indels: 7
0.91 0.05 0.05
Matches are distributed among these distances:
163 80 0.60
165 1 0.01
166 1 0.01
170 52 0.39
ACGTcount: A:0.43, C:0.22, G:0.13, T:0.22
Consensus pattern (166 bp):
CAAGCATATGAAACATAAATCAAGAAGCCGTATTTAAACCGGTAATCAAAAACAACGATAACAAT
ACTCCACTTGCTAGCTAATAACAATGTCACCATAGGTAAAAACTTAAGCTTTAATACGAATACAC
GACAACATCTAACCTCACCCAAATGAGCACACGGTA
Found at i:24837 original size:2 final size:2
Alignment explanation
Indices: 24830--24859 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
24820 TTATTTAGGG
24830 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24860 GTGTGTGGGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25855 original size:15 final size:15
Alignment explanation
Indices: 25835--25863 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
25825 ACCTACTGTT
25835 GAAGATGACGACGAG
1 GAAGATGACGACGAG
25850 GAAGATGACGACGA
1 GAAGATGACGACGA
25864 AGACGAAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.14, G:0.38, T:0.07
Consensus pattern (15 bp):
GAAGATGACGACGAG
Found at i:26157 original size:97 final size:97
Alignment explanation
Indices: 25991--26194 Score: 374
Period size: 97 Copynumber: 2.1 Consensus size: 97
25981 TTGATACTTT
* *
25991 GTCAATATCGAGATGTGCTTAAATCTTATTTTAAGATTAACTTGTTTTAGAGTTTGATTTTGTGA
1 GTCAATATTGAGATGTGCTTAAATCTTATTTTAAGATTAACTTGTTTTAGAGTTTGATTTTGAGA
26056 TGTGCTCCCACTTGATTCACAAACTAACTCGA
66 TGTGCTCCCACTTGATTCACAAACTAACTCGA
26088 GTCAATATTGAGATGTGCTTAAATCTTATTTTAAGATTAACTTGTTTTAGAGTTTGATTTTGAGA
1 GTCAATATTGAGATGTGCTTAAATCTTATTTTAAGATTAACTTGTTTTAGAGTTTGATTTTGAGA
26153 TGTGCTCCCACTTGATTCACAAACTAACTCGA
66 TGTGCTCCCACTTGATTCACAAACTAACTCGA
26185 GTTCAA-ATTG
1 G-TCAATATTG
26195 TTAACCGAGT
Statistics
Matches: 104, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
97 100 0.96
98 4 0.04
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (97 bp):
GTCAATATTGAGATGTGCTTAAATCTTATTTTAAGATTAACTTGTTTTAGAGTTTGATTTTGAGA
TGTGCTCCCACTTGATTCACAAACTAACTCGA
Found at i:27134 original size:2 final size:2
Alignment explanation
Indices: 27127--27159 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
27117 TAACTCTGGT
27127 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
27160 TGATAACTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:33503 original size:86 final size:86
Alignment explanation
Indices: 33391--33563 Score: 337
Period size: 86 Copynumber: 2.0 Consensus size: 86
33381 TTTTATCAAA
33391 AATAATTTCACATAAACTTATAATCTTCTATAAATAAATATTTAGTTATTAAATTTATTGATATA
1 AATAATTTCACATAAACTTATAATCTTCTATAAATAAATATTTAGTTATTAAATTTATTGATATA
*
33456 TACATAACCATTAATAAACAT
66 TACATAACCATCAATAAACAT
33477 AATAATTTCACATAAACTTATAATCTTCTATAAATAAATATTTAGTTATTAAATTTATTGATATA
1 AATAATTTCACATAAACTTATAATCTTCTATAAATAAATATTTAGTTATTAAATTTATTGATATA
33542 TACATAACCATCAATAAACAT
66 TACATAACCATCAATAAACAT
33563 A
1 A
33564 CATTTATACA
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
86 86 1.00
ACGTcount: A:0.47, C:0.11, G:0.02, T:0.40
Consensus pattern (86 bp):
AATAATTTCACATAAACTTATAATCTTCTATAAATAAATATTTAGTTATTAAATTTATTGATATA
TACATAACCATCAATAAACAT
Found at i:34730 original size:50 final size:50
Alignment explanation
Indices: 34655--34755 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
34645 TAGATATATT
*
34655 TACGAAGAATATCTAATAATTGAGGAGTGAATATCTAGCAATTATCAATC
1 TACGAAGAATATCTAATAATTGAGGAGTGAATATCCAGCAATTATCAATC
34705 TACGAAGAATATCTAATAATTGAGGAGTGAATATCCAGCAATTATCAATC
1 TACGAAGAATATCTAATAATTGAGGAGTGAATATCCAGCAATTATCAATC
34755 T
1 T
34756 GCACAATAAC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.30
Consensus pattern (50 bp):
TACGAAGAATATCTAATAATTGAGGAGTGAATATCCAGCAATTATCAATC
Found at i:35619 original size:52 final size:52
Alignment explanation
Indices: 35551--35654 Score: 172
Period size: 52 Copynumber: 2.0 Consensus size: 52
35541 TTCAATATTT
* *
35551 ACAATACATTTCTTTATTTTTACGAAAATATTCAAGACGTGAGATGAGAATC
1 ACAATACATTTCTTTATCTTTACGAAAATATTCAAGACGGGAGATGAGAATC
* *
35603 ACAATACCTTTTTTTATCTTTACGAAAATATTCAAGACGGGAGATGAGAATC
1 ACAATACATTTCTTTATCTTTACGAAAATATTCAAGACGGGAGATGAGAATC
35655 GAGTTAATGA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (52 bp):
ACAATACATTTCTTTATCTTTACGAAAATATTCAAGACGGGAGATGAGAATC
Found at i:37482 original size:57 final size:59
Alignment explanation
Indices: 37411--37540 Score: 158
Period size: 60 Copynumber: 2.2 Consensus size: 59
37401 AACTAATTAC
** *
37411 AAAGTTTGGGGACTAATATAGAA-AGAG-CGTAGTTT-AGGGATGAAATCAGAATATTCA
1 AAAGTTTAAGGACTAATATAGAAGAGAGTCATAGTTTGA-GGATGAAATCAGAATATTCA
* * *
37468 AAAGTTTAAGGACTAATTTAGAATGAGAGTCATAGTTTGAGGATGGAATTAGAATATTCA
1 AAAGTTTAAGGACTAATATAGAA-GAGAGTCATAGTTTGAGGATGAAATCAGAATATTCA
*
37528 AAAGTTCAAGGAC
1 AAAGTTTAAGGAC
37541 CAACTTAAAA
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
57 20 0.32
59 4 0.06
60 37 0.60
61 1 0.02
ACGTcount: A:0.41, C:0.07, G:0.25, T:0.28
Consensus pattern (59 bp):
AAAGTTTAAGGACTAATATAGAAGAGAGTCATAGTTTGAGGATGAAATCAGAATATTCA
Found at i:37578 original size:60 final size:60
Alignment explanation
Indices: 37440--37570 Score: 156
Period size: 60 Copynumber: 2.2 Consensus size: 60
37430 AGAAAGAGCG
* * * * * * *
37440 TAGTTTAGGGATGAAATCAGAATATTCAAAAGTTTAAGGACTAATTTAGAATGAGAGTCA
1 TAGTTTGGGGATGAAATTAGAATATTCAAAAGTTCAAGGACCAACTTAAAATAAGAGTCA
* * *
37500 TAGTTTGAGGATGGAATTAGAATATTCAAAAGTTCAAGGACCAACTTAAAATAATGA-TTA
1 TAGTTTGGGGATGAAATTAGAATATTCAAAAGTTCAAGGACCAACTTAAAATAA-GAGTCA
37560 TAGTTTGGGGA
1 TAGTTTGGGGA
37571 CGCAATTAAC
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
60 57 0.97
61 2 0.03
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (60 bp):
TAGTTTGGGGATGAAATTAGAATATTCAAAAGTTCAAGGACCAACTTAAAATAAGAGTCA
Found at i:38128 original size:42 final size:42
Alignment explanation
Indices: 38062--38180 Score: 204
Period size: 42 Copynumber: 2.9 Consensus size: 42
38052 TTTCCCCGAA
* *
38062 TTCCCGTGTTTG-TTCACGTAATTCGTTTTTCGGAAAATGTT
1 TTCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAACGTT
*
38103 TTCCCATGTTTGTTTCACGTAATTCGTTTTCCGGAAAACGTT
1 TTCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAACGTT
38145 TTCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAA
1 TTCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAA
38181 TGTAATTCAT
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
41 11 0.15
42 62 0.85
ACGTcount: A:0.17, C:0.20, G:0.18, T:0.45
Consensus pattern (42 bp):
TTCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAACGTT
Found at i:38407 original size:15 final size:15
Alignment explanation
Indices: 38389--38454 Score: 51
Period size: 15 Copynumber: 4.1 Consensus size: 15
38379 ATATATTTAT
38389 TAATATTTATAATAA
1 TAATATTTATAATAA
**
38404 TAATATTATATTTTAA
1 TAATATT-TATAATAA
* * *
38420 TATTATATAAAATAA
1 TAATATTTATAATAA
38435 TCAATTATATTATAATAA
1 T-AA-TAT-TTATAATAA
38453 TA
1 TA
38455 CAAGATATTA
Statistics
Matches: 37, Mismatches: 10, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
15 13 0.35
16 12 0.32
17 4 0.11
18 8 0.22
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (15 bp):
TAATATTTATAATAA
Found at i:38410 original size:21 final size:22
Alignment explanation
Indices: 38369--38428 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 22
38359 TAATTATTAA
* *
38369 AATATTTAAAAT-ATATTTATT
1 AATATTTATAATAATATATATT
38390 AATATTTATAATAATA-ATATT
1 AATATTTATAATAATATATATT
*
38411 -ATATTT-TAATATTATATA
1 AATATTTATAATAATATATA
38429 AAATAATCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
19 7 0.21
20 9 0.26
21 15 0.44
22 3 0.09
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
AATATTTATAATAATATATATT
Found at i:38453 original size:18 final size:19
Alignment explanation
Indices: 38421--38466 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 19
38411 ATATTTTAAT
*
38421 ATTATA-TAAAATAAT-CA
1 ATTATATTATAATAATACA
38438 ATTATATTATAATAATACA
1 ATTATATTATAATAATACA
*
38457 A-GATATTATA
1 ATTATATTATA
38467 TTTTTATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 6 0.24
18 16 0.64
19 3 0.12
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.39
Consensus pattern (19 bp):
ATTATATTATAATAATACA
Found at i:38529 original size:28 final size:29
Alignment explanation
Indices: 38380--38537 Score: 96
Period size: 28 Copynumber: 5.4 Consensus size: 29
38370 ATATTTAAAA
* * *
38380 TATATTTATTAATATTTATAATAA-TAATAT
1 TATATTTAATAATA--TATAATAATTATTTT
* * **
38410 TATATTTTAATATTATATAA-AATAATCAAT
1 TATA-TTTAATAATATATAATAATTAT-TTT
* *
38440 TATATTATAATAATACA-AGATATTATATTTT
1 TATATT-TAATAATATATA-ATAAT-TATTTT
38471 TAT-TTTAATAATATATAATAATT-TTTT
1 TATATTTAATAATATATAATAATTATTTT
*
38498 TATATTTAATAATGA-ATAAT-ATTATTTA
1 TATATTTAATAAT-ATATAATAATTATTTT
38526 TATATTTCAATA
1 TATATTT-AATA
38538 TATTTTAGTA
Statistics
Matches: 102, Mismatches: 14, Indels: 25
0.72 0.10 0.18
Matches are distributed among these distances:
27 10 0.10
28 27 0.26
29 27 0.26
30 22 0.22
31 14 0.14
32 2 0.02
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.51
Consensus pattern (29 bp):
TATATTTAATAATATATAATAATTATTTT
Found at i:38784 original size:20 final size:20
Alignment explanation
Indices: 38706--38775 Score: 131
Period size: 20 Copynumber: 3.5 Consensus size: 20
38696 TTTCCAGATG
38706 TTTTCCAGAAATGTAATTCA
1 TTTTCCAGAAATGTAATTCA
38726 TTTTCCAGAAATGTAATTCA
1 TTTTCCAGAAATGTAATTCA
*
38746 TTTTACAGAAATGTAATTCA
1 TTTTCCAGAAATGTAATTCA
38766 TTTTCCAGAA
1 TTTTCCAGAA
38776 TTCAAATTCC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (20 bp):
TTTTCCAGAAATGTAATTCA
Found at i:38784 original size:40 final size:40
Alignment explanation
Indices: 38706--38784 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 40
38696 TTTCCAGATG
* **
38706 TTTTCCAGAAATGTAATTCATTTTCCAGAAATGTAATTCA
1 TTTTACAGAAATGTAATTCATTTTCCAGAAATCAAATTCA
*
38746 TTTTACAGAAATGTAATTCATTTTCCAGAATTCAAATTC
1 TTTTACAGAAATGTAATTCATTTTCCAGAAATCAAATTC
38785 CAGTAATTCA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (40 bp):
TTTTACAGAAATGTAATTCATTTTCCAGAAATCAAATTCA
Found at i:38794 original size:15 final size:15
Alignment explanation
Indices: 38758--38824 Score: 91
Period size: 15 Copynumber: 4.5 Consensus size: 15
38748 TTACAGAAAT
**
38758 GTAATTCATTTTCCA
1 GTAATTCAAATTCCA
38773 G-AATTCAAATTCCA
1 GTAATTCAAATTCCA
**
38787 GTAATTCATTTTCCA
1 GTAATTCAAATTCCA
38802 GTAATTCAAATTCCA
1 GTAATTCAAATTCCA
38817 GTAATTCA
1 GTAATTCA
38825 TTTTCTGGAA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
14 12 0.27
15 33 0.73
ACGTcount: A:0.34, C:0.19, G:0.07, T:0.39
Consensus pattern (15 bp):
GTAATTCAAATTCCA
Found at i:38800 original size:29 final size:30
Alignment explanation
Indices: 38758--38829 Score: 137
Period size: 30 Copynumber: 2.4 Consensus size: 30
38748 TTACAGAAAT
38758 GTAATTCATTTTCCAG-AATTCAAATTCCA
1 GTAATTCATTTTCCAGTAATTCAAATTCCA
38787 GTAATTCATTTTCCAGTAATTCAAATTCCA
1 GTAATTCATTTTCCAGTAATTCAAATTCCA
38817 GTAATTCATTTTC
1 GTAATTCATTTTC
38830 TGGAAAACCA
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
29 16 0.38
30 26 0.62
ACGTcount: A:0.32, C:0.19, G:0.07, T:0.42
Consensus pattern (30 bp):
GTAATTCATTTTCCAGTAATTCAAATTCCA
Found at i:39123 original size:17 final size:18
Alignment explanation
Indices: 39101--39134 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
39091 GGATATATAA
39101 AAATTTTAAA-TTATTTT
1 AAATTTTAAATTTATTTT
39118 AAATTTTAAATTTATTT
1 AAATTTTAAATTTATTT
39135 GAGAATTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
AAATTTTAAATTTATTTT
Found at i:40335 original size:2 final size:2
Alignment explanation
Indices: 40328--40357 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
40318 AGAGCAACCA
40328 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
40358 TGTCAGCATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:42620 original size:2 final size:2
Alignment explanation
Indices: 42613--42662 Score: 66
Period size: 2 Copynumber: 25.0 Consensus size: 2
42603 CTATGATGTT
* *
42613 TA TA TA TA TA TCA TA T- TA TT TA TA TA TA TA TG TA TA TA TA TA
1 TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
42655 TA TA TA TA
1 TA TA TA TA
42663 AATTAATTTA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
1 1 0.02
2 39 0.93
3 2 0.05
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (2 bp):
TA
Found at i:42743 original size:18 final size:19
Alignment explanation
Indices: 42707--42744 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
42697 TAACGTCTAT
*
42707 TTTATTTTATTTGACTTTA
1 TTTATTTTATTTCACTTTA
*
42726 TTTA-TTTATTTCATTTTA
1 TTTATTTTATTTCACTTTA
42744 T
1 T
42745 AAGATGATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.21, C:0.05, G:0.03, T:0.71
Consensus pattern (19 bp):
TTTATTTTATTTCACTTTA
Found at i:47167 original size:2 final size:2
Alignment explanation
Indices: 47160--47214 Score: 69
Period size: 2 Copynumber: 28.0 Consensus size: 2
47150 TAAATTAATT
* *
47160 TA TA TA TA TA TA TA TA TA TA CA TA TA TA TA TA AA TA -A TA TGA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A
47202 TA TA -A TA TA TA TA
1 TA TA TA TA TA TA TA
47215 ACATCATAGA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
1 2 0.04
2 42 0.91
3 2 0.04
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (2 bp):
TA
Found at i:49819 original size:105 final size:108
Alignment explanation
Indices: 49587--49831 Score: 282
Period size: 105 Copynumber: 2.3 Consensus size: 108
49577 AGCCAAGGTT
* *
49587 GAACAAATTCTTCTCATTATGAACTCCTTCTCCCTTATTGGATGAGTTCTTCTCATTATGAACTC
1 GAACAAGTTCTTCTCATTATGAACT-CTTCTCCCTTA-TGGACGAGTTCTTCTCATTATGAACTC
* * *
49652 TCAACTGGAAATCTTGAACCAAATCCTTTTGCGGTGGACTTAGAAG
64 T-AACTGGAAATCTTGAACCAAATCCATCTGCGGTGAACTTAGAAG
* *
49698 GAACATGTTTTTCTCATTATGAACT-TTCTCCCTTA-GGACGAGTTCTTCTCATTATGAACTCT-
1 GAACAAGTTCTTCTCATTATGAACTCTTCTCCCTTATGGACGAGTTCTTCTCATTATGAACTCTA
* * *** ** * *
49760 TCTGGAAATGTTGGTTCACCTCCATCTGTGGTGAA-TTTGAAAG
66 ACTGGAAATCTTGAACCAAATCCATCTGCGGTGAACTTAG-AAG
49803 GAACAAGTTCTTCTCATTATGAACTCTTC
1 GAACAAGTTCTTCTCATTATGAACTCTTC
49832 ATTGGAAATG
Statistics
Matches: 114, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
104 3 0.03
105 50 0.44
106 3 0.03
107 26 0.23
109 10 0.09
111 22 0.19
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (108 bp):
GAACAAGTTCTTCTCATTATGAACTCTTCTCCCTTATGGACGAGTTCTTCTCATTATGAACTCTA
ACTGGAAATCTTGAACCAAATCCATCTGCGGTGAACTTAGAAG
Found at i:51105 original size:20 final size:18
Alignment explanation
Indices: 51082--51171 Score: 89
Period size: 17 Copynumber: 4.9 Consensus size: 18
51072 CCTTTTTCTC
51082 TTTTCATTTTTTCATTTCTTT
1 TTTTCA-TTTTTCA-TT-TTT
51103 TTTTCATTTTTCA-TTTT
1 TTTTCATTTTTCATTTTT
51120 TTTTCATTTTTTTTCATTTTT
1 TTTTCA---TTTTTCATTTTT
51141 TTTTC-TTTTTCATTTTT
1 TTTTCATTTTTCATTTTT
*
51158 TTATC-TTTTT-ATTT
1 TTTTCATTTTTCATTT
51172 GTTCCCTTTT
Statistics
Matches: 64, Mismatches: 1, Indels: 13
0.82 0.01 0.17
Matches are distributed among these distances:
16 4 0.06
17 30 0.47
18 1 0.02
20 14 0.22
21 15 0.23
ACGTcount: A:0.10, C:0.11, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTCATTTTTCATTTTT
Found at i:51113 original size:10 final size:10
Alignment explanation
Indices: 51109--51159 Score: 72
Period size: 10 Copynumber: 5.4 Consensus size: 10
51099 CTTTTTTTCA
51109 TTTTTCATTT
1 TTTTTCATTT
51119 TTTTTCATTT
1 TTTTTCATTT
51129 TTTTTCA-TT
1 TTTTTCATTT
*
51138 TTTTT--TTC
1 TTTTTCATTT
51146 TTTTTCATTT
1 TTTTTCATTT
51156 TTTT
1 TTTT
51160 ATCTTTTTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
8 6 0.17
9 7 0.19
10 23 0.64
ACGTcount: A:0.08, C:0.10, G:0.00, T:0.82
Consensus pattern (10 bp):
TTTTTCATTT
Found at i:51130 original size:27 final size:27
Alignment explanation
Indices: 51100--51171 Score: 103
Period size: 27 Copynumber: 2.7 Consensus size: 27
51090 TTTTCATTTC
51100 TTTTTTTCATTTTTCATTT-TTTTTCAT
1 TTTTTTTCATTTTT-ATTTCTTTTTCAT
*
51127 TTTTTTTCATTTTTTTTTCTTTTTCAT
1 TTTTTTTCATTTTTATTTCTTTTTCAT
51154 TTTTTTATC-TTTTTATTT
1 TTTTTT-TCATTTTTATTT
51172 GTTCCCTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
26 3 0.07
27 36 0.88
28 2 0.05
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.81
Consensus pattern (27 bp):
TTTTTTTCATTTTTATTTCTTTTTCAT
Found at i:51166 original size:10 final size:9
Alignment explanation
Indices: 51109--51171 Score: 51
Period size: 8 Copynumber: 7.1 Consensus size: 9
51099 CTTTTTTTCA
*
51109 TTTTTCATT
1 TTTTTTATT
51118 TTTTTTCATT
1 TTTTTT-ATT
51128 TTTTTTCATT
1 TTTTTT-ATT
*
51138 TTTTTT-TC
1 TTTTTTATT
*
51146 TTTTTCA-T
1 TTTTTTATT
51154 TTTTTTA-T
1 TTTTTTATT
*
51162 CTTTTTATT
1 TTTTTTATT
51171 T
1 T
51172 GTTCCCTTTT
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
8 19 0.43
9 6 0.14
10 19 0.43
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTTTTATT
Found at i:59821 original size:35 final size:35
Alignment explanation
Indices: 59772--59883 Score: 161
Period size: 35 Copynumber: 3.2 Consensus size: 35
59762 AAAACAATCC
* *
59772 TCAATTTCATTCTAAACCCCAAATTCCAAAGTAAT
1 TCAATTTCATTCTAAACCCCAAATTCTAAAATAAT
* *
59807 TCAATTTCACTCTAAACCCTAAATTCTAAAATAAT
1 TCAATTTCATTCTAAACCCCAAATTCTAAAATAAT
** *
59842 TCAATTAAATTCTAAACCCCAAATTCTAAAATACT
1 TCAATTTCATTCTAAACCCCAAATTCTAAAATAAT
59877 TCAATTT
1 TCAATTT
59884 AAGGTTTAGA
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 67 1.00
ACGTcount: A:0.42, C:0.23, G:0.01, T:0.34
Consensus pattern (35 bp):
TCAATTTCATTCTAAACCCCAAATTCTAAAATAAT
Found at i:61991 original size:35 final size:35
Alignment explanation
Indices: 61943--62052 Score: 148
Period size: 35 Copynumber: 3.1 Consensus size: 35
61933 CCTAAACCTT
* * * *
61943 AAATTGAAGTATTTTAGAATTTGGGGTTTATAATT
1 AAATTGAATTATTTTGGAATTTGGGGTTTAGAATG
* *
61978 TAATTGAATTATTTTGGAATTTAGGGTTTAGAATG
1 AAATTGAATTATTTTGGAATTTGGGGTTTAGAATG
* *
62013 AAATTGAATTACTTTGGAATTTGGGGTTTAGAATA
1 AAATTGAATTATTTTGGAATTTGGGGTTTAGAATG
62048 AAATT
1 AAATT
62053 AAGGACTATT
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 65 1.00
ACGTcount: A:0.35, C:0.01, G:0.21, T:0.44
Consensus pattern (35 bp):
AAATTGAATTATTTTGGAATTTGGGGTTTAGAATG
Found at i:62683 original size:112 final size:112
Alignment explanation
Indices: 62483--63057 Score: 916
Period size: 112 Copynumber: 5.1 Consensus size: 112
62473 TTGTCGATTT
* * * *
62483 GTGTCGATACTTTATAAAAATATATTGATTCATAACAATATAACAAGTAAAAAAATGACAAAACC
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
* * *
62548 GATCTATAAATGACAAAACAGGTAAAGCGCTACCAAATATATTAAAA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCAGATATATTGAAA
* * * * *
62595 GTATCGATACTTTATAAAAATGTATCTATCCATAATAATATAATAGGTAAAAAAATGACAAAATC
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
**
62660 GGTCTATAAATGACAAAACAGGTAAAGCGCTACTGGATATATTGAAA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCAGATATATTGAAA
* *
62707 GTGTTGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGATAAAAAAATGACAAAACC
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
*
62772 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCAGATATATTGAAA
* *
62819 GTGTCGATACTTTATAAAAATATATAGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
* *
62884 GGTATATAAATGACAAAACAGGTAAAGCGCTACCAGATATATTGATA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCAGATATATTGAAA
*
62931 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATAAAACAGGTAAAAAAATGACAAAACC
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
* * * *
62996 GGTCTATAAATGACAAAACAGGTAAAGCGCTATCGGATATGTTGATA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCAGATATATTGAAA
63043 GTGTCGATACTTTAT
1 GTGTCGATACTTTAT
63058 TATAAGTATC
Statistics
Matches: 427, Mismatches: 36, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
112 427 1.00
ACGTcount: A:0.47, C:0.13, G:0.14, T:0.26
Consensus pattern (112 bp):
GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
GGTCTATAAATGACAAAACAGGTAAAGCGCTACCAGATATATTGAAA
Found at i:63379 original size:182 final size:182
Alignment explanation
Indices: 62930--63380 Score: 733
Period size: 182 Copynumber: 2.5 Consensus size: 182
62920 ATATATTGAT
* * *
62930 AGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATAAAACAGGTAAAAAAATGACAAAAC
1 AGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAAGTAAAAATATGACAAAAC
** * * * *
62995 CGGTCTATAAATGACAAAACAGGTAAAGCGCTATCGGATATGTTGATAGTGTCGATACTTTATTA
66 CGGTCTCGAAATGACAAAACCGGTAAAGAGCTACCGGATATGTTGATAATGTCGATACTTTATTA
*
63060 TAAGTATCGACACTTTTGGAATTTAAAAAAGAAGAAGTTATAGCGCTAATAA
131 TAAGTATCGACACTTTTGGAATTTAAAAAAGAAGAAGTTATAGCGCCAATAA
* * * *
63112 AGTGTCGACACTTTATAAAAATGTATCGATCCATAAAAATATAACATGTAAAAATGTGACAAAAC
1 AGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAAGTAAAAATATGACAAAAC
*
63177 CGGTATCGAAATGACAAAACCGGTAAAGAGCTACCGGATATGTTGATAATGTCGATACTTTATTA
66 CGGTCTCGAAATGACAAAACCGGTAAAGAGCTACCGGATATGTTGATAATGTCGATACTTTATTA
63242 TAAGTATCGACACTTTTGGAATTTAAAAGAA-AAGAAGTTATAGCGCCAATAA
131 TAAGTATCGACACTTTTGGAATTTAAAA-AAGAAGAAGTTATAGCGCCAATAA
*
63294 AGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAAGTAAAAATATGACAAAAT
1 AGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAAGTAAAAATATGACAAAAC
*
63359 CGATCTCGAAATGACAAAACCG
66 CGGTCTCGAAATGACAAAACCG
63381 ATAGTAAAAA
Statistics
Matches: 247, Mismatches: 21, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
182 245 0.99
183 2 0.01
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.27
Consensus pattern (182 bp):
AGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAAGTAAAAATATGACAAAAC
CGGTCTCGAAATGACAAAACCGGTAAAGAGCTACCGGATATGTTGATAATGTCGATACTTTATTA
TAAGTATCGACACTTTTGGAATTTAAAAAAGAAGAAGTTATAGCGCCAATAA
Found at i:64140 original size:21 final size:21
Alignment explanation
Indices: 64116--64223 Score: 130
Period size: 21 Copynumber: 5.2 Consensus size: 21
64106 ACAGTATCGT
64116 TGCGAATTGGGAAAATCGCAA
1 TGCGAATTGGGAAAATCGCAA
** *
64137 TGCGAA-TAAGTAAATCGCAA
1 TGCGAATTGGGAAAATCGCAA
*
64157 CGCGAATTGGGAAAATCGCAA
1 TGCGAATTGGGAAAATCGCAA
** *
64178 TGCGAA-TAAGTAAATCGCAA
1 TGCGAATTGGGAAAATCGCAA
*
64198 CGCGAATTGGGAAAATCGCAA
1 TGCGAATTGGGAAAATCGCAA
64219 TGCGA
1 TGCGA
64224 TAATAAAAAA
Statistics
Matches: 69, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
20 32 0.46
21 37 0.54
ACGTcount: A:0.40, C:0.17, G:0.26, T:0.18
Consensus pattern (21 bp):
TGCGAATTGGGAAAATCGCAA
Found at i:64153 original size:20 final size:21
Alignment explanation
Indices: 64116--64239 Score: 119
Period size: 21 Copynumber: 6.0 Consensus size: 21
64106 ACAGTATCGT
**
64116 TGCGAATTGGGAAAATCGCAA
1 TGCGAATTAAGAAAATCGCAA
*
64137 TGCGAA-TAAGTAAATCGCAA
1 TGCGAATTAAGAAAATCGCAA
* **
64157 CGCGAATTGGGAAAATCGCAA
1 TGCGAATTAAGAAAATCGCAA
*
64178 TGCGAA-TAAGTAAATCGCAA
1 TGCGAATTAAGAAAATCGCAA
* **
64198 CGCGAATTGGGAAAATCGCAA
1 TGCGAATTAAGAAAATCGCAA
*
64219 TGCGATAATAA-AAAATCGCAA
1 TGCGA-ATTAAGAAAATCGCAA
64240 CGAGATACTT
Statistics
Matches: 81, Mismatches: 19, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
20 32 0.40
21 47 0.58
22 2 0.02
ACGTcount: A:0.43, C:0.16, G:0.23, T:0.18
Consensus pattern (21 bp):
TGCGAATTAAGAAAATCGCAA
Found at i:64171 original size:41 final size:41
Alignment explanation
Indices: 64117--64241 Score: 216
Period size: 41 Copynumber: 3.0 Consensus size: 41
64107 CAGTATCGTT
64117 GCGAATTGGGAAAATCGCAATGCGAATAAGTAAATCGCAAC
1 GCGAATTGGGAAAATCGCAATGCGAATAAGTAAATCGCAAC
64158 GCGAATTGGGAAAATCGCAATGCGAATAAGTAAATCGCAAC
1 GCGAATTGGGAAAATCGCAATGCGAATAAGTAAATCGCAAC
*
64199 GCGAATTGGGAAAATCGCAATGCGATAATAA-AAAATCGCAAC
1 GCGAATTGGGAAAATCGCAATGCG--AATAAGTAAATCGCAAC
64241 G
1 G
64242 AGATACTTAC
Statistics
Matches: 81, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
41 65 0.80
42 11 0.14
43 5 0.06
ACGTcount: A:0.42, C:0.17, G:0.24, T:0.17
Consensus pattern (41 bp):
GCGAATTGGGAAAATCGCAATGCGAATAAGTAAATCGCAAC
Found at i:64266 original size:20 final size:20
Alignment explanation
Indices: 64237--64286 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
64227 TAAAAAATCG
*
64237 CAACGAGATACT-TACTTTCA
1 CAACGCGATACTGT-CTTTCA
*
64257 CAACGCGATACTGTCTTTCG
1 CAACGCGATACTGTCTTTCA
64277 CAACGCGATA
1 CAACGCGATA
64287 ATACATAATC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 26 0.96
21 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (20 bp):
CAACGCGATACTGTCTTTCA
Found at i:64502 original size:22 final size:22
Alignment explanation
Indices: 64474--64517 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
64464 CACTCTCTCA
64474 CCCATCTCCGACGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
*
64496 CCCATCTCCGGCGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
64518 TATCTAAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.45, G:0.16, T:0.18
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:66159 original size:18 final size:18
Alignment explanation
Indices: 66138--66182 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
66128 TCCACTTCGG
*
66138 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCACCCA
*
66156 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
66174 GAGCCATCA
1 GAGCCATCA
66183 TCTGATCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.27, C:0.44, G:0.16, T:0.13
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:66705 original size:20 final size:20
Alignment explanation
Indices: 66655--66721 Score: 82
Period size: 20 Copynumber: 3.4 Consensus size: 20
66645 TAGTTTACTT
*
66655 TCGCAACACGAAAATGACTA
1 TCGCAACGCGAAAATGACTA
*
66675 TCGCAACGCGAAAATGGCTA
1 TCGCAACGCGAAAATGACTA
* **
66695 TCGCAATGCG-AAATGAAAA
1 TCGCAACGCGAAAATGACTA
66714 TCGCAACG
1 TCGCAACG
66722 ACAAAATCGC
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
19 13 0.32
20 27 0.68
ACGTcount: A:0.40, C:0.24, G:0.21, T:0.15
Consensus pattern (20 bp):
TCGCAACGCGAAAATGACTA
Found at i:66728 original size:39 final size:34
Alignment explanation
Indices: 66693--66784 Score: 129
Period size: 33 Copynumber: 2.8 Consensus size: 34
66683 CGAAAATGGC
66693 TATCGCAATGCGAAATGAAAATCGCAACGAC-AAA
1 TATCGCAATGCGAAATG-AAATCGCAACGACAAAA
66727 -ATCGCAATGCGAAATGAAATCGCAACGACAAAA
1 TATCGCAATGCGAAATGAAATCGCAACGACAAAA
*
66760 T-T-GCAACGCGAAATGAAAATCGCAA
1 TATCGCAATGCGAAATG-AAATCGCAA
66785 TGCGATTTGT
Statistics
Matches: 54, Mismatches: 1, Indels: 7
0.87 0.02 0.11
Matches are distributed among these distances:
32 25 0.46
33 29 0.54
ACGTcount: A:0.47, C:0.21, G:0.18, T:0.14
Consensus pattern (34 bp):
TATCGCAATGCGAAATGAAATCGCAACGACAAAA
Found at i:66729 original size:14 final size:14
Alignment explanation
Indices: 66710--66767 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
66700 ATGCGAAATG
66710 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
66724 AAAATCGCAATGCGAA
1 AAAATCGCAA--CGAC
66740 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
*
66756 AAAATTGCAACG
1 AAAATCGCAACG
66768 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
14 20 0.54
16 8 0.22
18 9 0.24
ACGTcount: A:0.48, C:0.22, G:0.17, T:0.12
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:66752 original size:32 final size:33
Alignment explanation
Indices: 66694--66784 Score: 157
Period size: 32 Copynumber: 2.8 Consensus size: 33
66684 GAAAATGGCT
66694 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
66727 ATCGCAATGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
* *
66759 ATTGCAACGCGAAATGAAAATCGCAA
1 ATCGCAATGCGAAATGAAAATCGCAA
66785 TGCGATTTGT
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
32 30 0.55
33 25 0.45
ACGTcount: A:0.47, C:0.21, G:0.19, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Found at i:66882 original size:20 final size:19
Alignment explanation
Indices: 66815--66895 Score: 83
Period size: 19 Copynumber: 4.3 Consensus size: 19
66805 GCGATTTTGT
*
66815 CGTTGCGAT-TTCATTTCG
1 CGTTGCGATAGTCATTTCG
** *
66833 CGTTGCGATTTTCATTTTG
1 CGTTGCGATAGTCATTTCG
* * *
66852 CATTACGATAGCCATTTCTG
1 CGTTGCGATAGTCATTTC-G
66872 CGTTGCGATAGTCATTTCG
1 CGTTGCGATAGTCATTTCG
66891 CGTTG
1 CGTTG
66896 TGCTTTTAAG
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
18 9 0.18
19 26 0.51
20 16 0.31
ACGTcount: A:0.15, C:0.21, G:0.22, T:0.42
Consensus pattern (19 bp):
CGTTGCGATAGTCATTTCG
Found at i:68939 original size:19 final size:19
Alignment explanation
Indices: 68917--69022 Score: 177
Period size: 19 Copynumber: 5.8 Consensus size: 19
68907 ATCGCAAAGA
68917 GAAAATCGCAATGCGAAAT
1 GAAAATCGCAATGCGAAAT
68936 GAAAATCGCAATGCGAAAT
1 GAAAATCGCAATGCGAAAT
68955 GAAAATCGCAATGCGAAAT
1 GAAAATCGCAATGCGAAAT
68974 GAAAATCGCAATGCGAAAT
1 GAAAATCGCAATGCGAAAT
68993 GAAAATCGCAA--CG--A-
1 GAAAATCGCAATGCGAAAT
69007 GAAAATCGCAATGCGA
1 GAAAATCGCAATGCGA
69023 TTTTCATTTC
Statistics
Matches: 84, Mismatches: 0, Indels: 8
0.91 0.00 0.09
Matches are distributed among these distances:
14 11 0.13
15 1 0.01
16 2 0.02
17 2 0.02
19 68 0.81
ACGTcount: A:0.47, C:0.17, G:0.22, T:0.14
Consensus pattern (19 bp):
GAAAATCGCAATGCGAAAT
Found at i:69098 original size:20 final size:20
Alignment explanation
Indices: 69041--69098 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
69031 TCGCATTGCG
* *
69041 ATTTTCTCGTTGCGATAACC
1 ATTTTCACGTTGCGATAGCC
69061 ATTTTCACGTTGCGATAGCC
1 ATTTTCACGTTGCGATAGCC
*
69081 ATTTTCGCGTTGCGATAG
1 ATTTTCACGTTGCGATAG
69099 TCAAATGAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.38
Consensus pattern (20 bp):
ATTTTCACGTTGCGATAGCC
Found at i:69786 original size:21 final size:21
Alignment explanation
Indices: 69720--69786 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
69710 GTGAATCGGG
*
69720 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGGGAGGGGA
* * ** * *
69740 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAACGGTGGGAGGGGA
69762 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGA
69783 CTCT
1 CTCT
69787 CGAGGAATGA
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGA
Found at i:69805 original size:42 final size:41
Alignment explanation
Indices: 69720--69842 Score: 113
Period size: 42 Copynumber: 2.9 Consensus size: 41
69710 GTGAATCGGG
* * * * *
69720 CTCTTGAATGGTGGGA-GGGACCTCTTCAACGATGACAGTGGC
1 CTCTTGAACGGTGGGAGGGGA-CTC-TCGAGGATGATAGGGGC
69762 CTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGAGGGGACTCTCGAGG-ATGATAGGGGC
* * * * *
69804 CTCTTCAACGATAGGAGTGGACTCTTGAGGGATGATAGG
1 CTCTTGAACGGTGGGAGGGGACTCTCGA-GGATGATAGG
69843 CGAGTCGGGC
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
41 4 0.06
42 58 0.85
43 6 0.09
ACGTcount: A:0.23, C:0.18, G:0.37, T:0.23
Consensus pattern (41 bp):
CTCTTGAACGGTGGGAGGGGACTCTCGAGGATGATAGGGGC
Found at i:71872 original size:20 final size:19
Alignment explanation
Indices: 71841--71901 Score: 68
Period size: 20 Copynumber: 3.1 Consensus size: 19
71831 TCTTTTGGTT
71841 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGA
* *
71860 GATAATGAGAATCGCAACGCG
1 GA-AATGAAAATCGCAACG-A
**
71881 GAAATGACTATCGCAACGA
1 GAAATGAAAATCGCAACGA
71900 GA
1 GA
71902 GAATCGCAAC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 4 0.11
20 29 0.83
21 2 0.06
ACGTcount: A:0.44, C:0.18, G:0.25, T:0.13
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGA
Found at i:71923 original size:33 final size:33
Alignment explanation
Indices: 71866--71962 Score: 140
Period size: 33 Copynumber: 2.9 Consensus size: 33
71856 ACGAGATAAT
*
71866 GAGAATCGCAACGCGGAAATGACTATCGCAACGA
1 GAGAATCGCAACGC-GAAATGACTATCGCAACCA
*
71900 GAGAATCGCAACGCGAAATGACTATCGCGACCA
1 GAGAATCGCAACGCGAAATGACTATCGCAACCA
* **
71933 GACAATCGCAACGCGAAATGAAAATCGCAA
1 GAGAATCGCAACGCGAAATGACTATCGCAA
71963 TGCGATTTTG
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
33 43 0.75
34 14 0.25
ACGTcount: A:0.40, C:0.25, G:0.24, T:0.11
Consensus pattern (33 bp):
GAGAATCGCAACGCGAAATGACTATCGCAACCA
Found at i:71996 original size:19 final size:19
Alignment explanation
Indices: 71963--72043 Score: 73
Period size: 19 Copynumber: 4.5 Consensus size: 19
71953 AAAATCGCAA
**
71963 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTTATTTCGCGT
71982 TGCGATTTTTATTTCGCGT
1 TGCGATTTTTATTTCGCGT
*
72001 TGCGA---TTA--TCTCGT
1 TGCGATTTTTATTTCGCGT
**
72015 TGCGATAGTTATTTCCGCGT
1 TGCGATTTTTATTT-CGCGT
72035 TGCGATTTT
1 TGCGATTTT
72044 CATTCTCGAA
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
14 10 0.20
16 3 0.06
17 3 0.06
19 23 0.46
20 11 0.22
ACGTcount: A:0.11, C:0.17, G:0.25, T:0.47
Consensus pattern (19 bp):
TGCGATTTTTATTTCGCGT
Found at i:72621 original size:21 final size:21
Alignment explanation
Indices: 72588--72688 Score: 59
Period size: 20 Copynumber: 4.9 Consensus size: 21
72578 TGCGAAAGTA
* * *
72588 AGTATCTCGTTGCGATTTTTT
1 AGTATCGCATTGCGATTTTTC
* **
72609 ATTATCGCATTGCGA-TAGTC
1 AGTATCGCATTGCGATTTTTC
*
72629 AGTATCGCATTGCGATTTTCCC
1 AGTATCGCATTGCGATTTT-TC
* *
72651 AAT-TCGCGTTGCGATTTACTT-
1 AGTATCGCATTGCGATTT--TTC
72672 A-T-TCGCATTGCGATTTT
1 AGTATCGCATTGCGATTTT
72689 CCCAATTCGC
Statistics
Matches: 62, Mismatches: 14, Indels: 11
0.71 0.16 0.13
Matches are distributed among these distances:
18 1 0.02
20 30 0.48
21 27 0.44
22 3 0.05
23 1 0.02
ACGTcount: A:0.19, C:0.20, G:0.19, T:0.43
Consensus pattern (21 bp):
AGTATCGCATTGCGATTTTTC
Found at i:72644 original size:20 final size:20
Alignment explanation
Indices: 72551--72644 Score: 89
Period size: 20 Copynumber: 4.7 Consensus size: 20
72541 CGCTATGTAA
*
72551 ATCGCGTTGCGAAAGTCAGT
1 ATCGCGTTGCGATAGTCAGT
* *
72571 ATCGCGTTGCGAAAGTAAGT
1 ATCGCGTTGCGATAGTCAGT
* ** * *
72591 ATCTCGTTGCGATTTTTTATT
1 ATCGCGTTGCGA-TAGTCAGT
*
72612 ATCGCATTGCGATAGTCAGT
1 ATCGCGTTGCGATAGTCAGT
*
72632 ATCGCATTGCGAT
1 ATCGCGTTGCGAT
72645 TTTCCCAATT
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 47 0.78
21 13 0.22
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.34
Consensus pattern (20 bp):
ATCGCGTTGCGATAGTCAGT
Found at i:72663 original size:41 final size:41
Alignment explanation
Indices: 72572--72706 Score: 139
Period size: 41 Copynumber: 3.3 Consensus size: 41
72562 AAAGTCAGTA
* * * ** *
72572 TCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTT-TTATT
1 TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* *
72612 ATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAAT
1 -TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* **
72654 TCGCGTTGCGAT-TTACTTATTCGCATTGCGATTTTCCCAAT
1 TCGCGTTGCGATAGTAAGTA-TCGCATTGCGATTTTCCCAAT
72695 TCGCGTTGCGAT
1 TCGCGTTGCGAT
72707 TTACTTATTC
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
40 3 0.04
41 74 0.94
42 2 0.03
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.39
Consensus pattern (41 bp):
TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
Found at i:72698 original size:21 final size:20
Alignment explanation
Indices: 72633--72725 Score: 96
Period size: 20 Copynumber: 4.5 Consensus size: 20
72623 ATAGTCAGTA
*
72633 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACCAAT
* **
72654 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACCAAT
*
72674 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACCAAT
* **
72695 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACCAAT
72715 TCGCATTGCGA
1 TCGCATTGCGA
72726 ATTGGGAAAA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 32 0.55
21 26 0.45
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (20 bp):
TCGCATTGCGATTTACCAAT
Found at i:72707 original size:41 final size:41
Alignment explanation
Indices: 72633--72725 Score: 186
Period size: 41 Copynumber: 2.3 Consensus size: 41
72623 ATAGTCAGTA
72633 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
72674 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
72715 TCGCATTGCGA
1 TCGCATTGCGA
72726 ATTGGGAAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (41 bp):
TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
Found at i:73035 original size:23 final size:23
Alignment explanation
Indices: 73009--73054 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
72999 ATAGGTTAAA
* *
73009 ATAAGCGTTACCTATTACATTAT
1 ATAAGCGCTACCTAATACATTAT
*
73032 ATAAGCGCTACCTAATATATTAT
1 ATAAGCGCTACCTAATACATTAT
73055 TGTACTTGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (23 bp):
ATAAGCGCTACCTAATACATTAT
Found at i:75089 original size:147 final size:147
Alignment explanation
Indices: 74647--75670 Score: 987
Period size: 147 Copynumber: 7.0 Consensus size: 147
74637 ATTATGCTCG
* * * * * * *
74647 ATTAATCAAAGAGTCATATAATTCCGACTTTGCTGGATTATGAGTATGGTTTATCTCC-GTAATT
1 ATTAATTAAAGAGTCATATAATTTCGACTTTGTTGGATTATGAGTCTAGTTTCTC-CCTTTAATT
* * *
74711 GAGATATAGACTCATAATCTAGCAAAGTCGATATTATTTTGACTTTCAATCTTATATTCTAAATA
65 GAGATATAGACTCATAATCTAACAAAGTCGATATTATCTTGACTTTCGATCTTATATTCTAAATA
* *
74776 TTTATGAGATTCAGTTCA
130 TTTATGAGATTTAATTCA
* * * * *
74794 ATTGATTAAAGAATCATATAATTTCGACCTTGTTGGATTATGAGTCTAACTTT-TCTCTTTAATT
1 ATTAATTAAAGAGTCATATAATTTCGACTTTGTTGGATTATGAGTCT-AGTTTCTCCCTTTAATT
*
74858 GAGATA-A-ACACATAATCTAACAAAGTCGATATTATCTTGACTTTCGATCTTATATTCTAAATA
65 GAGATATAGACTCATAATCTAACAAAGTCGATATTATCTTGACTTTCGATCTTATATTCTAAATA
* *
74921 TTTATTAGATTTAATTTA
130 TTTATGAGATTTAATTCA
** * * **
74939 ATTAATTAAAGAGTTGTATAATTTCAATTTTGTTAAATTATGAGTCTAGTTTCTCCCTTTAATTG
1 ATTAATTAAAGAGTCATATAATTTCGACTTTGTTGGATTATGAGTCTAGTTTCTCCCTTTAATTG
* * * ** * *
75004 AGATATAGACTCCTAATCTAACAAAGTCAATATCATCTTGGTTTTGGATCTTATATTCCAAATAT
66 AGATATAGACTCATAATCTAACAAAGTCGATATTATCTTGACTTTCGATCTTATATTCTAAATAT
* *
75069 TTACGAGATTCAATTCA
131 TTATGAGATTTAATTCA
* * * ** *
75086 ATTAATTAAAGAAG-CATATGATTTCGACTTTGCTT-GATTATGAGTTTAGTTCCTCTTTTTAGT
1 ATTAATTAAAG-AGTCATATAATTTCGACTTTG-TTGGATTATGAGTCTAGTTTCTCCCTTTAAT
* * * * * * * ** * *
75149 TAAGATATAGACTCGTAATCTAGCAGAGTCTATATTATCTTAATTTTCTTTCTTATGTTCCAAAT
64 TGAGATATAGACTCATAATCTAACAAAGTCGATATTATCTTGACTTTCGATCTTATATTCTAAAT
75214 ATTTATGATG-TTTAATTCA
129 ATTTATGA-GATTTAATTCA
* * * * *
75233 ATTAATTAAAGAATCATATAATATCAACTTTGTTGGATTATGAGTCTAATTTCT-CTTCTTAATT
1 ATTAATTAAAGAGTCATATAATTTCGACTTTGTTGGATTATGAGTCTAGTTTCTCCCT-TTAATT
* * * * * *
75297 GATATATAGACTCATAATCTAGCAAAGTCGATATTATCTTGACTTTCGATATTTTGTTCTAAAAA
65 GAGATATAGACTCATAATCTAACAAAGTCGATATTATCTTGACTTTCGATCTTATATTCTAAATA
* *
75362 TTTACGAGATTTAATTTA
130 TTTATGAGATTTAATTCA
* * * * * *
75380 GTCAATTAAAGAGCCATATAATTTCGATTTTGCTGG---ATGAGTCTAGTTTCTCTCC-TTGATT
1 ATTAATTAAAGAGTCATATAATTTCGACTTTGTTGGATTATGAGTCTAGTTTCTC-CCTTTAATT
* * * * * * * *
75441 GAGATATAAACTTATAGTCTAACATAA-TCGATATTATTTTAACTTTCGACCTTATATTCCATAT
65 GAGATATAGACTCATAATCTAACA-AAGTCGATATTATCTTGACTTTCGATCTTATATTCTAAAT
* * *
75505 AGTTGTGAGATTTAATTTA
129 ATTTATGAGATTTAATTCA
* * * *
75524 ATTAGTTAAAGAGTCATATAATTTTGACTTTGTTGGATTATGAGTATAGTTTCT-CTTCTTAATT
1 ATTAATTAAAGAGTCATATAATTTCGACTTTGTTGGATTATGAGTCTAGTTTCTCCCT-TTAATT
* ** * * * * *
75588 GAGATATATGTAGACTCGTAATCTAACAAAGTTAATATTATCTTAATTTTTGATTTTATATTTTA
65 GAG--ATA--TAGACTCATAATCTAACAAAGTCGATATTATCTTGACTTTCGATCTTATATTCTA
75653 AATATTTATGAGATTTAA
126 AATATTTATGAGATTTAA
75671 AATTTTCATG
Statistics
Matches: 707, Mismatches: 145, Indels: 46
0.79 0.16 0.05
Matches are distributed among these distances:
144 115 0.16
145 123 0.17
146 10 0.01
147 392 0.55
148 8 0.01
149 3 0.00
150 2 0.00
151 54 0.08
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.43
Consensus pattern (147 bp):
ATTAATTAAAGAGTCATATAATTTCGACTTTGTTGGATTATGAGTCTAGTTTCTCCCTTTAATTG
AGATATAGACTCATAATCTAACAAAGTCGATATTATCTTGACTTTCGATCTTATATTCTAAATAT
TTATGAGATTTAATTCA
Done.