genome.fa.s4772.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004772.1 Hibiscus syriacus cultivar Beakdansim tig00010762_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  157048

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4784--4924	58	2.4	58	78	4	149	33	20	17	29	1.95
11236--11366	22	5.9	22	67	17	67	66	3	2	28	1.19
11236--11294	23	2.5	22	76	15	57	72	1	0	25	0.93
11231--11290	31	1.9	31	83	6	77	75	1	0	23	0.90
11231--11294	8	8.0	8	79	17	62	73	1	0	25	0.92
12011--12095	37	2.3	37	87	0	116	30	11	15	42	1.83
12439--12474	14	2.6	14	100	0	72	22	8	30	38	1.83
12872--13437	106	5.4	106	86	3	752	22	18	24	34	1.96
12892--13445	207	2.7	205	88	2	766	22	17	24	35	1.95
13996--14034	16	2.5	16	87	4	53	43	12	15	28	1.83
14030--14104	36	2.1	36	90	5	116	36	14	25	24	1.93
14760--14820	24	2.5	24	94	0	104	40	1	19	37	1.62
20555--20585	2	15.5	2	100	0	62	51	0	0	48	1.00
20555--20606	8	6.3	9	82	10	51	57	0	1	40	1.10
21078--21179	37	2.8	37	86	0	132	34	11	13	40	1.81
22121--22186	26	2.5	26	82	0	87	48	12	7	31	1.68
22589--22628	20	2.0	20	85	9	55	42	25	15	17	1.88
23046--23095	25	2.0	25	96	0	91	44	22	8	26	1.80
23162--23208	20	2.3	20	88	0	67	36	23	17	23	1.95
23213--23306	34	2.8	34	88	0	143	21	23	19	36	1.95
23286--23334	19	2.5	20	86	6	73	14	12	24	48	1.77
25910--25956	24	2.0	24	95	0	85	34	12	21	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25914--25965	24	2.2	24	85	0	68	36	15	19	28	1.92
33194--33283	27	3.3	27	75	9	85	25	11	1	62	1.35
43665--43760	49	1.9	50	89	2	149	46	14	23	14	1.82
44514--45182	105	6.4	105	97	0	1257	32	25	19	22	1.97
47073--47135	30	2.1	30	82	11	76	17	4	4	73	1.19
47419--47508	27	3.3	27	75	9	85	25	11	1	62	1.35
53754--53828	29	2.6	29	84	0	96	18	40	26	14	1.90
53755--53842	29	3.0	29	84	0	95	20	37	30	11	1.88
54059--54145	29	3.0	29	84	0	120	14	29	39	16	1.88
60434--60469	2	18.0	2	100	0	72	50	0	50	0	1.00
61650--61713	19	3.1	21	84	11	87	28	0	1	70	0.97
62352--62411	23	2.6	23	91	0	102	48	6	15	30	1.70
66707--66842	62	2.2	62	95	0	245	30	29	13	26	1.94
76819--76882	32	2.0	32	100	0	128	34	21	15	28	1.94
77197--77241	2	22.5	2	100	0	90	51	0	0	48	1.00
78358--78713	73	4.9	73	89	3	488	45	5	2	47	1.37
78369--78713	144	2.4	144	90	2	521	45	4	2	47	1.37
78358--78715	36	9.9	35	83	8	376	45	5	2	47	1.37
84373--84488	58	2.0	57	93	1	196	56	3	7	32	1.45
98099--98207	49	2.3	46	80	4	119	57	8	6	27	1.52
98530--98583	26	2.1	26	82	0	63	44	5	9	40	1.60
98627--98662	18	2.0	18	94	0	63	63	5	2	27	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100671--100700	16	1.9	15	93	6	51	20	3	0	76	0.92
101736--101769	17	1.9	18	88	5	52	23	0	11	64	1.26
101772--101803	16	2.0	16	93	0	55	28	6	0	65	1.16
115675--115705	6	5.2	6	100	0	62	0	16	48	35	1.46
115730--116940	605	2.0	605	100	0	2422	33	16	18	31	1.93
123856--123904	3	16.7	3	82	4	64	32	4	2	61	1.26
125888--125931	22	2.0	22	81	0	52	27	4	15	52	1.63
127454--127515	32	1.9	32	83	6	81	16	12	11	59	1.61
131117--131202	4	22.0	4	95	4	158	50	25	0	24	1.50
131664--131853	105	1.8	105	87	4	285	31	19	11	37	1.88
131848--131967	36	3.4	36	80	4	111	30	19	12	37	1.89
132212--132315	28	3.6	28	83	8	129	28	12	15	43	1.83
132226--132381	30	5.1	30	75	15	149	31	12	14	41	1.83
132268--132409	67	2.1	67	97	0	266	28	13	11	45	1.79
133039--133117	28	2.7	28	83	16	99	26	15	12	45	1.82
133073--133127	28	2.0	28	88	0	83	30	14	10	43	1.80
133074--133135	28	2.2	28	85	0	79	32	17	11	38	1.85
133164--133492	133	2.5	134	89	1	509	25	32	18	23	1.97
133418--133540	40	3.0	40	77	7	122	21	33	20	24	1.97
133691--133736	3	15.7	3	81	4	58	32	4	2	60	1.28
135706--135749	22	2.0	22	81	0	52	27	4	15	52	1.63
137655--137748	35	2.7	35	94	0	170	30	13	12	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137795--137908	60	1.9	60	83	7	151	35	16	3	44	1.65
137911--137979	30	2.3	29	78	9	77	31	26	2	39	1.71
140287--140638	174	2.0	176	96	2	656	32	12	10	44	1.76
141343--141410	30	2.2	30	97	2	127	14	14	16	54	1.72
145824--145860	17	2.2	17	100	0	74	45	27	5	21	1.73
146029--146069	22	1.9	21	90	5	64	70	2	0	26	0.99
150825--150865	21	2.0	21	100	0	82	29	9	14	46	1.77
150826--150871	21	2.2	21	92	0	74	28	10	13	47	1.76
155340--155379	16	2.5	16	87	0	53	35	0	0	65	0.93
155335--155375	12	3.5	12	75	18	50	34	0	0	65	0.93
155320--155381	21	3.0	21	80	17	67	33	0	0	66	0.92
155346--155383	16	2.4	16	86	4	51	34	0	0	65	0.93

Tables:   1

The End!