genome.fa.s4774.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004774.1 Hibiscus syriacus cultivar Beakdansim tig00010768_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57980

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1233--1291	29	2.0	29	100	0	118	49	13	13	23	1.78
2990--3116	40	3.2	40	78	0	146	41	13	20	24	1.88
4856--4912	25	2.2	25	96	3	105	49	31	7	12	1.67
9003--9035	15	2.2	15	100	0	66	15	45	12	27	1.81
9957--10178	71	3.0	71	89	5	320	36	18	24	19	1.94
15498--15572	39	1.9	39	94	0	132	24	25	30	20	1.98
16303--16351	19	2.6	19	90	0	80	32	26	12	28	1.92
16431--16476	2	23.0	2	100	0	92	50	0	0	50	1.00
20035--20111	24	3.4	23	81	8	79	63	1	1	33	1.11
20082--20111	7	4.1	7	95	4	51	73	0	0	26	0.84
20515--20583	20	3.4	20	73	13	61	33	1	1	63	1.12
21133--21190	31	1.9	31	85	3	82	39	1	15	43	1.57
22101--22544	228	2.0	222	92	3	746	44	7	7	40	1.62
22610--22655	20	2.3	19	89	10	74	54	10	17	17	1.70
25051--25115	21	3.1	21	80	6	69	40	15	29	15	1.88
25149--25214	33	2.0	33	90	0	105	28	0	48	22	1.51
26535--27080	183	3.0	183	100	0	1092	34	14	17	33	1.90
30182--30244	23	2.7	23	90	0	90	36	7	17	38	1.79
30182--30254	23	3.2	23	86	3	85	34	6	19	39	1.78
30254--30296	21	2.1	21	86	4	61	27	13	9	48	1.73
30613--30675	23	2.7	23	90	0	90	36	7	17	38	1.79
30613--30685	23	3.2	23	86	3	85	34	6	19	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31041--31103	23	2.7	23	90	0	90	36	7	17	38	1.79
31041--31113	23	3.2	23	86	3	85	34	6	19	39	1.78
30083--31350	431	2.9	431	98	0	2416	39	8	12	39	1.73
31382--31432	25	2.0	25	92	0	84	33	7	19	39	1.81
31681--31717	18	2.1	18	89	0	56	32	5	10	51	1.60
31673--31719	24	2.0	24	86	0	67	34	4	14	46	1.64
31976--32101	39	3.2	39	97	0	234	48	20	13	17	1.81
32505--32568	23	2.8	23	87	0	92	35	6	20	37	1.78
32505--32577	23	3.2	23	82	7	85	34	5	20	39	1.76
39566--39604	20	1.9	20	84	5	51	38	2	0	58	1.12
39930--39971	18	2.3	18	95	0	75	50	16	0	33	1.46
40501--40543	19	2.3	19	88	8	61	44	0	0	55	0.99
40516--40570	27	2.0	28	85	7	76	45	0	0	54	0.99
44376--44506	60	2.2	60	85	0	172	35	16	3	44	1.66
44393--44548	60	2.6	59	80	6	170	33	19	4	42	1.72
47420--47580	78	2.1	78	93	0	277	23	13	13	49	1.77
51352--51390	19	2.1	19	90	0	60	41	2	0	56	1.13
51617--51645	14	2.1	14	100	0	58	20	13	6	58	1.58
53853--53918	32	2.1	32	97	0	123	28	22	10	37	1.88
56625--56715	29	3.2	28	75	4	92	37	16	2	43	1.60
56976--57130	60	2.6	59	75	13	163	43	5	17	33	1.73

Tables:   1

The End!