Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004777.1 Hibiscus syriacus cultivar Beakdansim tig00010773_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89638

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2096--2133
20
1.9
20
88
0
58
23
7
21
47
1.77
2502--2617
51
2.4
47
84
8
135
37
18
18
25
1.93
3986--4027
15
2.7
15
88
3
57
23
4
9
61
1.45
4246--4298
22
2.2
24
83
12
65
47
0
3
49
1.19
10325--10399
39
2.0
38
87
10
109
46
9
16
28
1.77
16883--16999
2
58.5
2
100
0
234
49
0
0
50
1.00
20141--20611
37
13.3
36
76
14
269
45
3
6
44
1.46
20247--20423
28
6.4
28
70
23
117
45
3
6
44
1.45
20210--20364
65
2.4
63
86
10
215
45
2
5
45
1.41
20303--20399
48
2.0
48
84
7
126
44
3
7
45
1.47
20357--20385
2
14.5
2
100
0
58
51
0
0
48
1.00
20314--20458
73
2.0
74
94
1
256
44
2
6
45
1.44
20373--20423
25
2.0
25
96
0
93
45
5
7
41
1.57
20430--20506
2
38.5
2
100
0
154
50
0
0
49
1.00
22270--22299
6
5.0
6
91
0
51
36
0
0
63
0.95
22266--22299
12
2.8
12
90
0
59
35
0
0
64
0.94
22463--22496
16
2.0
18
88
11
54
32
11
29
26
1.92
24244--24292
24
2.0
24
96
0
89
34
26
12
26
1.92
28891--29198
39
8.2
37
87
7
412
43
3
8
44
1.52
28891--29198
76
4.1
74
87
8
412
43
3
8
44
1.52
29220--29256
18
2.2
16
90
9
56
21
8
0
70
1.13
30542--30610
21
3.3
21
69
15
61
14
7
4
73
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30580--30640
28
2.3
26
76
17
63
19
3
1
75
1.03
32786--32855
24
2.8
25
77
16
65
41
2
1
54
1.24
32809--32862
24
2.3
23
81
9
63
46
1
1
50
1.23
38174--38226
21
2.5
21
87
0
79
32
32
18
16
1.94
38230--38417
19
9.3
19
75
13
160
22
20
23
34
1.97
38238--38417
21
8.8
21
76
12
169
21
20
24
33
1.97
38230--38417
40
4.6
40
82
4
232
22
20
23
34
1.97
38216--38417
82
2.5
82
89
1
318
22
20
23
34
1.97
38507--38538
6
5.5
6
92
7
57
34
50
15
0
1.45
39182--39214
6
5.5
6
96
0
57
3
15
51
30
1.58
40748--41065
5
63.0
5
66
23
125
38
1
4
55
1.30
40748--41043
7
40.3
7
67
22
103
39
2
4
54
1.32
40797--41048
2
139.0
2
64
28
68
40
1
3
54
1.29
40844--41065
40
5.7
39
73
18
153
38
1
3
56
1.26
40751--41060
44
7.3
43
70
18
170
38
1
4
55
1.31
40839--41059
34
6.6
34
71
18
137
39
1
3
55
1.28
41036--41073
16
2.4
16
90
0
58
28
2
0
68
1.03
43877--43928
21
2.5
21
84
6
70
48
1
32
17
1.58
58893--58951
28
2.1
29
90
3
93
45
8
15
30
1.75
61139--61169
12
2.7
12
95
5
55
58
16
9
16
1.63
63443--63640
59
3.4
59
89
0
306
35
13
19
30
1.91
64121--64213
45
2.0
46
85
6
127
46
6
24
22
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70272--70421
34
4.1
34
69
17
113
27
23
10
38
1.88
70222--70410
79
2.4
79
90
1
281
25
24
12
37
1.91
71955--72121
57
2.9
59
77
3
187
29
25
20
25
1.99
76036--76098
24
2.7
24
80
7
76
31
19
20
28
1.97
76037--76107
23
3.0
23
77
6
72
29
19
22
28
1.98
83115--83158
18
2.4
18
88
0
61
34
0
2
63
1.07
83200--83228
14
2.1
14
100
0
58
34
37
13
13
1.85
85339--85396
27
2.1
29
83
6
75
20
0
1
77
0.86

Tables:   1

The End!