genome.fa.s478.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000478.1 Hibiscus syriacus cultivar Beakdansim tig00000891_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132084

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8704--8763	26	2.3	26	94	0	102	21	20	30	28	1.98
10308--10957	55	11.9	54	82	9	469	27	24	16	31	1.96
10373--10941	110	5.2	109	83	7	590	26	24	16	31	1.96
11300--11396	37	2.6	37	88	0	140	26	18	20	34	1.96
20055--20108	25	2.2	25	100	0	108	29	42	14	12	1.83
21337--21423	23	3.8	23	85	0	111	35	22	25	16	1.94
22739--22784	17	2.7	17	96	0	83	41	15	8	34	1.78
33262--33426	85	1.9	85	81	7	201	34	18	16	30	1.93
33449--33475	2	13.5	2	100	0	54	48	0	0	51	1.00
35443--35470	13	2.2	13	100	0	56	21	14	7	57	1.61
37858--37949	23	4.0	23	82	0	112	19	25	23	31	1.98
40409--41240	411	2.0	409	86	3	1163	43	8	8	38	1.67
53116--53172	27	2.1	27	83	6	71	45	5	1	47	1.35
60048--60102	21	2.7	21	97	2	103	30	21	0	47	1.51
64325--64363	15	2.8	14	84	7	53	64	5	12	17	1.46
64394--64418	13	1.9	13	100	0	50	84	0	16	0	0.63
64652--64686	17	2.0	17	88	5	52	54	0	8	37	1.31
65769--65834	2	32.5	2	82	14	82	46	3	3	46	1.33
65769--65834	16	3.9	17	88	9	91	46	3	3	46	1.33
69240--69316	37	2.1	37	85	7	104	44	3	2	49	1.34
69247--69379	63	2.1	61	83	9	160	42	5	4	47	1.46
69309--69521	36	6.0	34	70	15	103	39	5	5	49	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69222--69404	100	1.8	103	82	8	241	43	6	4	46	1.48
69324--69521	35	5.6	35	69	11	109	40	5	5	48	1.48
70209--71077	84	10.5	83	79	7	888	24	21	24	29	1.99
70209--71077	165	5.2	165	85	4	907	24	21	24	29	1.99
70160--71022	414	2.1	413	96	0	1566	24	21	25	29	1.99
74474--74520	19	2.5	18	83	10	67	65	14	8	10	1.45
75253--75285	16	2.0	17	94	5	59	30	39	6	24	1.79
77763--77829	28	2.3	29	79	5	82	38	7	2	50	1.46
77724--77799	36	2.1	36	85	4	100	43	3	2	50	1.34
77731--77861	64	2.1	61	85	7	174	41	6	3	48	1.46
77705--78047	34	9.8	33	70	21	136	43	5	4	46	1.46
77950--78049	36	2.6	38	84	6	123	43	6	5	46	1.50
78038--78073	2	18.0	2	100	0	72	50	0	0	50	1.00
78474--78591	45	2.6	45	91	1	193	15	30	22	31	1.95
78683--78718	17	2.1	17	89	0	54	2	13	0	83	0.76
78681--78718	19	2.1	17	90	9	58	2	13	0	84	0.73
78681--78719	10	4.0	10	83	3	53	2	15	0	82	0.79
89016--89088	24	3.0	24	78	11	69	73	1	9	15	1.14
90586--90863	37	7.2	38	79	14	227	47	7	3	41	1.50
90762--90846	41	2.1	41	91	2	136	52	8	3	35	1.48
91270--91309	19	2.2	19	86	13	57	45	2	5	47	1.38
105124--105171	23	2.1	23	88	0	69	35	12	18	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108570--109280	184	3.9	184	98	0	1359	34	15	14	35	1.89
109272--109324	22	2.4	22	84	6	63	35	9	11	43	1.73
110742--110815	3	24.7	3	78	0	76	25	33	5	35	1.79
110750--110840	42	2.2	42	87	0	128	21	32	7	37	1.82
110755--110822	9	7.6	9	73	6	57	23	33	7	35	1.83
110746--110843	6	16.3	6	76	8	56	21	32	7	38	1.81
111076--111971	198	4.5	199	97	0	1697	31	15	14	38	1.88
111076--111971	397	2.3	398	97	0	1713	31	15	14	38	1.88
112053--112097	19	2.4	19	92	0	72	57	8	2	31	1.41
113884--113949	33	2.0	33	87	0	96	24	45	1	28	1.62
116249--116295	20	2.4	19	86	6	76	21	17	8	53	1.70
116416--116461	20	2.3	20	89	10	76	17	17	10	54	1.70
126425--126473	2	24.5	2	100	0	98	51	0	0	48	1.00
127383--127421	15	2.6	15	84	11	53	46	2	0	51	1.14
129640--129996	130	2.7	131	86	3	477	40	16	9	33	1.81

Tables:   1

The End!