Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004780.1 Hibiscus syriacus cultivar Beakdansim tig00010781_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98406

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
376--434
29
2.1
28
84
9
75
30
1
3
64
1.20
2079--2154
21
3.7
21
73
3
73
26
27
15
30
1.96
6423--6519
50
1.9
50
95
0
176
48
12
2
37
1.53
23749--23785
8
4.6
8
100
0
74
78
0
0
21
0.75
25266--25330
3
21.3
3
76
14
62
66
3
0
30
1.07
25259--25330
24
3.0
22
77
16
74
66
2
1
29
1.14
25266--25374
14
7.6
14
69
23
68
61
1
0
35
1.13
25335--25383
23
2.1
23
85
7
64
57
2
0
40
1.10
25387--25454
29
2.4
27
79
9
82
45
2
1
50
1.26
25385--25440
29
1.9
29
88
0
85
44
1
0
53
1.11
25394--25453
29
2.1
29
87
0
84
51
3
1
43
1.28
25440--25464
11
2.3
11
100
0
50
44
8
8
40
1.63
25423--25552
38
3.4
39
81
14
148
45
9
3
41
1.54
25466--25657
81
2.3
80
76
15
185
44
8
3
43
1.53
34849--34885
2
19.5
2
89
10
60
51
0
0
48
1.00
39856--39929
23
3.2
24
80
5
89
24
12
16
47
1.80
39875--40004
59
2.2
58
90
2
206
23
13
16
46
1.83
39937--39988
24
2.2
24
96
0
95
25
13
15
46
1.82
41765--41893
60
2.2
60
81
5
145
31
13
18
36
1.89
44590--44745
60
2.6
60
93
1
258
33
13
21
31
1.92
70154--70239
19
4.4
19
77
9
84
17
18
20
43
1.89
70856--70889
6
5.7
6
92
0
59
2
14
47
35
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70982--71066
41
2.0
41
84
6
109
37
23
22
16
1.93
71007--71070
21
3.1
21
70
4
67
37
26
20
15
1.92
77231--77276
19
2.3
21
75
14
53
43
0
2
54
1.12
82928--82981
24
2.3
24
81
9
58
29
7
1
61
1.34
89039--89141
48
2.1
49
96
1
190
33
17
25
23
1.96

Tables:   1

The End!