Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004781.1 Hibiscus syriacus cultivar Beakdansim tig00010782_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48334

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6662--6726
21
3.0
22
93
4
114
24
27
26
21
1.99
8344--8388
21
2.1
21
87
0
63
15
24
28
31
1.96
11462--11527
22
3.0
22
97
0
123
24
27
27
21
1.99
11475--11515
13
3.5
13
75
25
54
24
26
26
21
2.00
13167--13211
21
2.1
21
87
0
63
15
24
28
31
1.96
14350--14424
29
2.6
29
85
2
98
33
14
16
36
1.89
18314--18357
15
2.7
17
75
13
56
54
2
2
40
1.25
19894--20016
60
2.0
60
81
9
144
36
10
13
39
1.80
20230--20358
59
2.2
58
79
9
138
42
8
7
41
1.64
23579--23659
38
2.2
38
90
2
128
12
9
38
39
1.76
23615--24152
226
2.4
218
86
7
730
25
12
26
34
1.92
24596--24681
33
2.6
33
86
0
127
38
27
6
26
1.82
24690--24734
18
2.6
17
89
6
65
28
28
0
42
1.56
33792--33843
21
2.5
19
77
17
59
15
7
0
76
0.99
33946--34012
12
5.2
12
73
19
55
23
1
1
73
1.00
33937--34008
17
4.3
17
74
12
69
23
1
2
72
1.06
33936--34012
9
8.3
9
78
16
70
23
1
2
72
1.04
37840--38032
95
2.0
94
86
4
264
33
16
17
32
1.92
39216--40249
84
12.4
84
80
5
1037
31
24
19
24
1.98
39216--40251
333
3.1
328
82
5
1091
31
24
19
24
1.98
39292--40188
249
3.6
248
91
1
1384
30
24
19
24
1.98
41788--41833
10
4.6
10
86
7
58
15
6
0
78
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41770--41895
61
2.1
58
80
14
132
15
6
3
74
1.16
41932--41981
16
3.0
16
85
8
73
16
4
6
74
1.17
44321--44491
60
2.9
60
81
8
190
33
19
4
42
1.72
44398--44489
29
3.1
29
69
14
80
36
22
4
35
1.74

Tables:   1

The End!