Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004782.1 Hibiscus syriacus cultivar Beakdansim tig00010784_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69633

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
709--758
20
2.5
20
86
0
73
30
36
10
24
1.88
810--998
40
4.7
40
78
7
188
41
22
14
21
1.89
843--1063
20
11.1
20
70
10
148
42
22
14
20
1.89
832--1061
60
3.8
60
75
9
202
41
23
14
20
1.89
810--978
80
2.1
80
88
0
257
40
22
14
21
1.90
1588--1643
20
2.8
20
80
0
67
19
14
17
48
1.81
3608--3646
12
3.2
12
85
0
51
30
2
2
64
1.21
5233--5389
65
2.4
65
85
7
201
29
2
15
52
1.56
5757--5792
18
2.0
18
94
0
63
16
2
25
55
1.55
7052--7161
19
5.6
19
84
4
123
30
12
20
35
1.90
7062--7161
40
2.5
41
85
6
127
31
13
21
35
1.91
7109--7223
20
5.8
20
84
7
128
22
14
23
39
1.91
7109--7223
40
2.8
42
83
7
141
22
14
23
39
1.91
7149--7235
20
4.4
19
81
13
104
19
13
25
41
1.88
7229--7295
20
3.3
20
95
0
116
20
17
25
35
1.95
7169--7300
40
3.3
39
76
16
121
21
15
24
38
1.92
7109--7275
60
2.8
61
79
10
177
22
14
23
38
1.92
7494--7538
18
2.4
18
85
3
54
40
0
0
60
0.97
7485--7526
21
2.0
21
85
0
57
45
0
0
54
0.99
7621--7659
18
2.2
17
86
4
51
69
2
0
28
1.02
12862--12966
35
3.0
35
100
0
210
34
20
5
40
1.76
15118--15156
20
2.0
20
84
0
51
23
7
23
46
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15328--15388
20
2.9
21
87
7
79
18
26
34
21
1.96
19795--19827
18
1.9
17
88
11
50
18
12
6
63
1.48
19787--19837
16
3.3
15
77
17
50
15
11
3
68
1.34
27704--27748
19
2.4
19
84
0
54
6
6
13
73
1.24
27714--27756
11
4.2
11
82
17
56
0
11
11
76
1.02
27714--27755
19
2.2
19
86
0
57
0
11
11
76
1.03
46009--46087
32
2.5
32
80
0
95
24
36
20
18
1.95
49107--49146
2
20.0
2
94
0
71
47
0
2
50
1.14
52884--52908
12
2.1
12
100
0
50
40
20
0
40
1.52
54265--54307
22
1.9
23
85
4
61
41
2
6
48
1.43
54357--54396
15
2.6
15
88
4
53
45
2
5
47
1.38
54355--54443
16
5.8
15
74
15
58
47
2
5
44
1.39
56020--56059
15
2.8
14
88
7
62
22
0
2
75
0.93
56931--57001
9
7.6
9
73
14
54
2
25
1
70
1.09
58910--58965
28
2.0
27
89
3
85
69
1
3
25
1.14
60523--60749
124
1.8
124
94
3
404
23
15
26
34
1.95
60709--60934
65
3.7
64
81
12
248
26
14
19
38
1.90
61597--61684
32
2.8
32
87
0
122
32
23
14
28
1.94
62757--62803
20
2.3
21
82
10
62
2
14
10
72
1.21
63383--63593
65
3.3
63
80
10
221
30
23
18
27
1.98
65541--65617
21
3.7
21
96
0
136
28
24
23
23
1.99
65541--65638
21
4.7
21
92
1
135
29
24
24
21
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65659--65715
22
2.7
21
78
10
64
22
21
31
24
1.98
65829--65886
30
2.0
29
90
10
91
44
17
5
32
1.70
65829--65888
29
2.0
30
93
6
104
43
16
6
33
1.74
67145--67186
22
1.9
23
85
9
61
38
7
7
47
1.58

Tables:   1

The End!