genome.fa.s4786.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004786.1 Hibiscus syriacus cultivar Beakdansim tig00010790_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128271

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20256--20313	28	2.1	28	96	0	107	24	5	20	50	1.69
24369--24404	15	2.4	15	100	0	72	30	11	30	27	1.91
30122--30159	8	5.0	8	87	9	53	52	7	0	39	1.31
30059--30466	200	2.0	199	92	5	691	57	4	7	29	1.48
30326--30361	18	2.0	18	89	10	56	52	8	0	38	1.32
31986--33108	105	10.7	105	95	0	1951	22	18	25	33	1.97
33836--33931	50	1.9	50	86	0	138	14	22	14	47	1.81
43310--43353	20	2.2	20	88	8	63	72	2	6	18	1.17
44469--44546	13	5.8	13	69	19	52	71	1	5	21	1.12
44590--44627	8	5.0	8	87	9	53	52	7	0	39	1.31
44527--44939	205	2.0	199	94	4	720	57	4	7	29	1.48
44799--44834	18	2.0	18	89	10	56	52	8	0	38	1.32
47388--47434	24	2.1	23	84	11	62	53	4	2	40	1.32
52025--52066	21	2.0	22	85	4	59	61	0	0	38	0.96
54104--54563	226	2.0	226	94	0	805	25	12	18	43	1.85
59306--59657	173	2.0	176	89	4	548	33	15	12	38	1.85
76415--76483	31	2.2	31	84	5	86	43	24	4	27	1.73
78532--78689	21	7.8	20	72	7	86	38	25	17	18	1.92
78656--78849	20	9.6	20	80	5	212	35	25	19	19	1.95
78656--78849	60	3.2	60	81	3	237	35	25	19	19	1.95
79232--79302	33	2.2	33	92	0	115	11	22	18	47	1.80
79381--79458	41	1.9	41	97	0	147	44	16	25	12	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79382--79457	21	3.7	21	83	3	109	46	17	25	11	1.82
79442--79498	14	3.7	14	70	20	51	43	22	22	10	1.84
79440--79514	33	2.3	33	92	0	123	46	24	20	9	1.79
79510--79607	19	5.7	19	70	22	90	10	23	22	43	1.83
79532--79621	14	5.7	14	72	23	72	8	24	23	43	1.82
79515--79629	33	3.5	33	97	0	221	9	23	20	46	1.80
81325--82071	93	8.1	93	99	0	1462	21	12	19	46	1.83
82119--82246	19	7.3	19	71	19	98	46	28	16	9	1.78
82154--82246	33	2.8	32	90	4	141	47	26	17	8	1.76
82119--82246	52	2.5	51	69	15	118	46	28	16	9	1.78
82242--82360	19	6.8	19	76	18	114	10	20	21	47	1.81
82245--82339	33	2.9	33	93	0	163	12	21	20	46	1.83
82311--82376	19	3.4	19	87	6	89	10	16	27	45	1.80
84304--84339	14	2.6	14	95	0	63	33	0	22	44	1.53
84446--84490	19	2.4	19	92	0	72	46	13	20	20	1.83
84515--84725	52	4.0	52	98	0	404	13	23	16	46	1.83
84515--84667	33	4.5	33	74	19	161	13	22	16	46	1.83
84537--84753	19	12.4	19	76	19	231	13	21	17	47	1.82
84556--84753	33	5.8	33	76	14	188	13	21	18	46	1.82
87949--88178	20	11.5	20	84	1	228	20	18	24	36	1.94
88028--88300	60	4.5	59	77	10	169	20	17	25	35	1.95
88129--88321	20	9.6	20	72	10	101	18	15	25	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88165--88247	21	4.0	21	73	6	78	25	16	24	33	1.96
88145--88243	42	2.4	43	77	11	100	21	18	23	37	1.94
88268--88320	19	2.8	19	100	0	106	9	16	22	50	1.74
92056--92109	21	2.6	22	83	16	71	42	0	1	55	1.10
102962--102992	14	2.2	14	94	0	53	41	9	6	41	1.63
102974--103060	41	2.1	42	89	4	131	34	11	5	48	1.63
103068--103098	14	2.2	14	94	0	53	41	9	6	41	1.63
105889--105958	12	5.8	12	73	6	61	50	17	14	18	1.79
105887--105958	24	3.0	24	83	0	99	50	16	13	19	1.79
105887--105978	48	1.9	48	84	4	123	50	15	14	20	1.78
105887--105993	48	2.2	48	81	6	119	48	15	14	20	1.81
105887--105993	24	4.4	25	73	11	89	48	15	14	20	1.81
110583--110640	12	4.8	12	78	0	62	51	18	13	15	1.76
127166--127200	18	2.0	18	94	5	63	40	11	8	40	1.72

Tables:   1

The End!