genome.fa.s4787.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004787.1 Hibiscus syriacus cultivar Beakdansim tig00010792_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51213

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5160--5221	20	3.3	20	69	17	69	38	19	24	17	1.93
5170--5239	20	3.7	19	70	16	65	37	20	25	17	1.94
5228--5322	20	4.7	20	80	2	91	34	24	17	23	1.96
5795--5832	20	1.9	20	88	0	58	13	15	21	50	1.78
7148--7192	18	2.5	18	85	0	63	26	42	15	15	1.87
7718--7775	14	3.9	14	77	16	62	48	25	15	10	1.77
7702--7792	32	2.8	33	93	3	157	47	23	17	12	1.81
7665--7792	18	7.3	19	69	20	73	44	23	18	13	1.85
7793--7838	20	2.3	20	88	3	67	15	21	26	36	1.93
9816--9911	37	2.7	35	85	6	115	43	19	21	14	1.87
9845--9912	19	3.6	19	96	4	129	47	16	20	16	1.83
10997--11050	24	2.2	24	90	0	81	24	16	20	38	1.92
11223--11247	12	2.1	12	100	0	50	72	0	28	0	0.86
13529--13655	33	3.8	33	83	4	175	44	19	20	15	1.87
13596--13659	19	3.6	19	70	20	66	42	20	25	12	1.87
13530--13654	66	1.9	66	94	0	223	44	20	20	16	1.87
13659--13730	19	4.1	18	73	20	71	13	20	19	45	1.84
13837--13873	14	2.6	14	86	0	56	48	24	0	27	1.51
17300--17479	19	9.8	19	74	16	121	45	22	21	11	1.84
17325--17423	33	3.0	33	86	1	135	40	26	22	11	1.87
17395--17484	19	4.7	19	93	2	153	46	22	20	11	1.81
17395--17484	39	2.3	38	94	1	153	46	22	20	11	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17480--17560	19	4.5	19	71	16	64	11	16	24	48	1.78
18092--18169	41	1.9	41	83	0	102	23	16	21	38	1.93
18073--18166	20	4.7	20	77	2	80	24	18	24	32	1.97
18155--18250	41	2.3	41	96	0	138	19	23	16	39	1.92
18155--18247	20	4.6	20	75	4	87	19	24	17	38	1.92
21183--21319	30	4.5	30	81	3	157	37	24	9	28	1.86
21183--21319	60	2.2	62	93	2	233	37	24	9	28	1.86
30847--31069	43	5.2	43	82	7	258	22	21	6	48	1.73
33301--33357	22	2.6	22	94	0	96	43	19	21	15	1.87
35135--35467	169	2.0	169	95	1	596	20	19	26	33	1.96
35343--35533	64	2.9	65	92	2	312	19	18	26	35	1.95
35311--35532	64	3.5	64	88	5	308	20	18	26	34	1.95
36931--36979	22	2.2	22	92	0	80	28	14	24	32	1.94
36943--36986	22	2.0	22	86	0	61	31	13	22	31	1.93
37579--37620	21	2.0	22	85	4	59	4	9	9	76	1.15
37601--37648	15	3.4	14	80	11	53	2	16	6	75	1.11
38807--38854	20	2.4	21	83	13	66	56	8	14	20	1.64

Tables:   1

The End!