genome.fa.s4788.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004788.1 Hibiscus syriacus cultivar Beakdansim tig00010793_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94172

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21--54	16	2.2	16	89	5	52	32	0	8	58	1.29
7471--7531	31	1.9	32	90	3	97	62	8	0	29	1.24
10723--10753	16	1.9	16	100	0	62	29	45	0	25	1.54
19511--19536	3	8.7	3	100	0	52	69	30	0	0	0.89
24484--24520	2	18.5	2	100	0	74	48	0	0	51	1.00
27751--27852	2	51.0	2	100	0	204	50	0	0	50	1.00
29006--29079	36	2.0	37	94	2	132	31	12	12	44	1.78
29531--29761	114	2.0	114	96	1	428	33	19	14	31	1.92
30186--30307	21	5.8	21	70	13	99	21	18	25	34	1.96
30205--30311	42	2.6	41	96	3	196	20	20	26	32	1.97
30893--30929	6	6.5	6	96	3	60	0	16	54	29	1.43
31007--31057	21	2.4	21	96	0	93	19	17	21	41	1.91
32951--32987	13	2.7	14	87	8	58	51	2	5	40	1.39
40502--40526	13	1.9	13	100	0	50	40	12	24	24	1.88
42057--42081	13	1.9	13	100	0	50	44	16	16	24	1.86
43537--43626	30	3.0	29	73	10	74	44	4	16	34	1.68
43485--43626	59	2.4	61	83	5	182	43	4	17	34	1.69
43521--43618	29	3.4	28	72	8	79	46	3	14	35	1.60
44966--45002	16	2.3	17	81	13	51	48	29	13	8	1.71
44973--45012	16	2.5	16	87	0	53	45	32	15	7	1.74
45790--45865	32	2.4	32	84	6	93	35	23	14	26	1.93
56283--56389	3	35.7	3	100	0	214	67	0	32	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59945--60050	29	3.6	29	96	3	185	13	29	37	19	1.90
60058--60128	17	4.4	16	82	7	90	21	9	52	16	1.73
60068--60134	16	4.2	16	81	7	82	20	7	56	14	1.62
60058--60128	33	2.2	32	92	2	115	21	9	52	16	1.73
60066--60129	15	4.1	15	82	9	83	20	7	54	17	1.67
60099--60221	60	2.0	60	100	0	246	19	8	52	20	1.71
60159--60189	15	2.1	15	100	0	62	19	6	54	19	1.65
60648--60691	21	2.1	21	91	0	70	29	0	15	54	1.42
60668--60730	28	2.2	30	91	5	103	31	0	11	57	1.34
61234--61278	21	2.2	21	84	4	56	35	0	8	55	1.31
61539--61597	26	2.3	25	75	18	66	47	8	3	40	1.51
63466--63497	12	2.7	12	100	0	64	28	18	37	15	1.92
63492--63714	35	6.0	35	82	13	277	26	32	21	20	1.98
63475--63708	117	2.0	117	97	1	443	26	30	23	20	1.98
63527--63684	82	1.9	82	93	2	273	26	31	22	19	1.98
63749--63828	29	2.8	29	92	3	126	15	31	32	21	1.94
64015--64066	25	2.1	25	100	0	104	26	11	34	26	1.91
64079--64124	23	2.0	23	100	0	92	47	4	39	8	1.54
64079--64139	23	2.6	23	86	5	59	50	6	36	6	1.54
64129--64181	21	2.5	21	96	0	97	62	0	35	1	1.06
64127--64158	17	1.9	16	93	6	55	62	0	37	0	0.95
64245--64351	45	2.4	45	98	0	205	31	4	25	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64389--64520	45	3.0	45	80	14	134	40	0	12	47	1.41
65398--65430	17	1.9	17	93	0	57	45	12	6	36	1.66
65415--65483	22	3.0	22	73	19	77	47	7	4	40	1.51
65640--65679	14	2.9	14	88	3	55	47	5	2	45	1.38
65666--65701	11	3.4	11	88	3	56	58	5	0	36	1.22
65622--65708	38	2.4	37	81	9	99	51	4	2	41	1.35
65713--65746	17	1.9	17	94	5	59	52	8	0	38	1.33
65992--66054	28	2.2	30	91	5	103	57	11	0	31	1.34
65996--66061	28	2.4	28	85	10	98	56	10	0	33	1.34
66031--66079	21	2.3	21	85	3	71	53	16	0	30	1.43
66538--66564	14	1.9	14	100	0	54	18	51	7	22	1.70
66506--66627	59	2.0	60	98	1	237	20	51	8	19	1.72
66597--66660	15	4.1	15	80	11	83	17	54	7	20	1.67
66598--66668	17	4.4	16	82	7	90	16	52	9	21	1.73
66588--66654	16	4.2	16	79	7	73	16	55	7	20	1.65
66598--66668	33	2.2	32	92	2	115	16	52	9	21	1.73
66676--66781	29	3.6	29	96	3	185	19	37	29	13	1.90
68975--69073	3	33.0	3	100	0	198	33	0	0	66	0.92
88971--88997	11	2.5	11	100	0	54	0	7	0	92	0.38
89939--89968	15	2.0	15	100	0	60	53	0	13	33	1.40

Tables:   1

The End!