Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004789.1 Hibiscus syriacus cultivar Beakdansim tig00010794_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66284

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5604--5650
25
1.9
25
86
4
69
55
17
2
25
1.53
6391--6430
17
2.4
17
95
0
71
15
25
17
42
1.88
12529--12555
14
1.9
14
100
0
54
29
0
7
62
1.22
14491--14572
41
2.0
41
100
0
164
31
21
24
21
1.98
16488--17147
138
4.8
138
90
0
978
23
20
23
31
1.98
17272--17399
63
2.0
63
89
0
193
39
0
21
38
1.59
17465--17495
14
2.2
14
100
0
62
25
0
16
58
1.38
17603--17675
34
2.1
34
89
0
110
38
5
4
52
1.44
18189--18258
21
3.3
20
88
5
95
21
22
35
20
1.96
20035--20116
30
2.8
30
71
14
73
58
0
1
40
1.06
20342--20484
60
2.4
60
83
4
173
21
33
27
17
1.96
21031--21088
23
2.8
20
77
15
55
75
8
1
13
1.10
24239--24306
24
2.8
24
97
0
127
38
10
13
38
1.78
28163--28202
21
1.9
21
89
0
62
30
27
15
27
1.96
30713--30765
26
2.0
27
81
7
63
41
16
0
41
1.49
35192--35230
19
2.1
19
90
0
60
15
35
17
30
1.91
35197--35239
19
2.3
19
87
0
59
20
34
13
30
1.92
39931--39961
6
5.2
6
92
0
53
83
0
12
3
0.75
41069--41180
58
1.9
58
83
5
147
34
4
30
30
1.77
45114--45171
29
2.0
29
89
0
89
15
36
25
22
1.94
45211--45281
10
6.7
10
73
23
65
25
38
26
9
1.87
45228--45281
20
2.7
20
97
0
99
25
37
27
9
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45228--45281
10
5.4
10
79
16
67
25
37
27
9
1.87
45394--45453
23
2.6
23
81
0
66
10
35
25
30
1.88
45436--45468
14
2.4
14
94
0
57
6
30
39
24
1.79
45485--45540
14
4.0
14
88
0
85
10
26
39
23
1.87
45755--45801
22
2.1
22
84
0
58
57
29
8
4
1.48
45771--45879
32
3.4
32
80
10
134
55
28
9
7
1.58
45820--45871
16
3.2
16
75
0
59
53
30
11
3
1.54
45820--45923
33
3.2
33
86
4
131
48
27
11
12
1.76
45867--45929
17
3.8
17
76
4
65
41
28
11
19
1.85
46565--46594
14
2.1
14
93
0
51
40
16
0
43
1.48
47242--47301
21
2.8
21
84
2
75
73
0
6
20
1.05
47235--47287
14
3.8
13
80
11
61
75
0
7
16
1.02
47242--47298
7
8.0
7
78
3
51
73
0
7
19
1.05
47242--47298
14
4.0
14
79
2
60
73
0
7
19
1.05
52010--52060
20
2.5
20
100
0
102
58
3
9
27
1.47
56443--56514
21
3.5
20
81
5
72
30
29
11
29
1.91
58852--58885
18
1.9
17
88
5
50
26
0
5
67
1.13
65270--65311
20
2.1
20
86
0
57
33
23
11
30
1.91

Tables:   1

The End!