genome.fa.s479.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000479.1 Hibiscus syriacus cultivar Beakdansim tig00000907_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  183264

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
384--430	19	2.6	19	93	6	80	31	0	10	57	1.33
658--1411	195	3.9	198	88	6	1156	36	15	16	31	1.90
656--1411	386	2.0	384	91	5	1222	36	15	16	31	1.90
4236--4573	180	1.9	176	92	6	565	36	14	14	34	1.87
7549--7593	22	2.0	22	86	0	63	40	11	6	42	1.67
7835--7876	21	2.0	21	95	0	75	11	9	11	66	1.44
7637--7973	111	3.0	111	91	3	541	26	12	14	46	1.79
7895--8058	86	1.9	86	97	0	310	27	14	14	43	1.85
8034--8075	21	2.0	21	95	0	75	11	9	11	66	1.44
8034--8084	20	2.5	21	87	3	77	11	9	13	64	1.49
8429--8469	22	1.9	21	95	5	73	53	2	0	43	1.13
8792--8851	23	2.6	23	71	10	59	40	11	1	46	1.50
8630--8864	87	2.7	87	83	3	294	35	12	8	44	1.72
12801--12847	21	2.2	20	82	14	51	68	4	8	19	1.33
16745--16811	27	2.4	28	82	9	84	43	26	10	19	1.83
17737--17766	11	2.7	11	100	0	60	30	26	16	26	1.97
19654--19704	20	2.5	20	100	0	102	29	19	21	29	1.98
22378--22497	24	5.1	24	80	8	122	20	24	23	31	1.98
22378--22469	46	2.0	47	85	6	125	19	26	23	30	1.98
22378--22476	23	4.2	24	79	7	105	21	25	22	31	1.98
23185--23274	32	2.8	32	86	0	108	15	32	30	22	1.95
24247--24290	23	1.9	23	95	0	79	43	15	6	34	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36525--36567	16	2.6	16	85	7	52	58	4	4	32	1.39
39226--39349	25	5.0	26	90	6	188	29	15	19	35	1.92
39478--39529	3	17.0	3	80	11	61	65	0	0	34	0.93
39682--39851	40	4.0	40	68	15	115	27	19	30	22	1.98
39695--39896	91	2.2	91	97	0	377	28	16	28	26	1.97
39786--40085	141	2.2	137	82	6	340	25	17	28	28	1.98
41036--41072	8	4.5	8	86	6	56	10	13	0	75	1.04
54158--54231	25	3.0	25	92	2	114	28	14	18	37	1.91
54325--54367	3	14.7	3	80	4	52	60	2	4	32	1.30
55239--55644	120	3.4	121	83	7	449	32	14	6	46	1.69
55305--55652	120	2.9	121	85	5	454	32	14	6	45	1.72
57051--57108	29	2.0	29	100	0	116	24	31	10	34	1.89
62806--62889	29	2.9	29	83	3	89	30	7	20	41	1.79
62834--62902	29	2.3	29	85	2	84	31	4	24	39	1.75
69937--70006	17	4.0	18	85	5	99	18	47	20	14	1.83
70037--70110	29	2.5	29	80	2	85	32	8	20	39	1.82
72494--72521	13	2.2	13	100	0	56	46	21	14	17	1.84
73003--73037	14	2.5	14	95	0	61	34	11	20	34	1.88
73201--73287	33	2.8	31	81	13	92	45	0	3	50	1.18
73190--73296	30	3.7	29	74	17	73	48	0	2	48	1.16
73326--73370	23	2.0	23	86	0	63	42	0	4	53	1.21
73327--73395	23	3.0	23	80	6	59	44	0	4	50	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73365--73445	19	4.3	19	72	20	64	48	1	1	49	1.17
73891--73944	21	2.7	21	94	5	94	46	7	27	18	1.76
96360--96415	28	2.0	28	82	0	67	19	7	0	73	1.06
97376--97421	24	1.9	24	86	0	65	8	10	6	73	1.23
102214--102292	3	26.0	3	75	7	70	55	0	1	43	1.07
102548--103167	45	13.8	45	92	1	1010	32	20	24	23	1.98
103823--103877	19	2.7	20	86	11	76	38	10	14	36	1.81
104205--104341	53	2.6	54	83	1	177	26	21	16	35	1.94
104205--104359	54	2.9	52	80	5	175	23	21	16	38	1.93
107928--107989	32	1.9	32	86	0	88	22	19	16	41	1.89
110834--111191	172	2.1	172	97	1	682	26	21	12	39	1.89
111499--111584	43	2.0	43	88	0	127	36	24	9	30	1.87
115170--115237	22	3.0	22	84	4	91	57	1	1	39	1.17
115164--115230	16	4.1	16	79	11	82	55	1	1	41	1.18
115168--115236	3	21.7	3	82	8	75	57	1	1	39	1.16
116559--116729	65	2.7	65	89	1	274	35	19	14	29	1.92
116737--117221	121	4.0	120	85	4	612	33	24	16	24	1.96
116754--117221	248	1.9	244	86	1	666	33	24	17	25	1.96
119056--119114	12	4.8	12	76	17	50	18	6	0	74	1.03
119059--119120	31	2.0	30	84	9	81	17	9	0	72	1.10
119121--119172	2	26.5	2	92	3	79	44	0	0	55	0.99
119120--119172	23	2.3	23	90	3	81	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121331--121369	18	2.1	18	85	4	51	51	2	0	46	1.14
130602--130704	38	2.7	39	83	5	122	40	5	11	41	1.65
130682--130729	25	1.9	25	95	0	87	47	0	10	41	1.37
130637--130767	63	2.1	63	91	2	210	45	3	9	41	1.56
130697--130794	38	2.6	39	87	4	139	46	4	7	41	1.50
130853--130891	9	4.2	9	84	15	53	30	2	0	66	1.05
130850--130921	13	5.9	12	78	10	58	25	1	1	72	1.01
130833--130919	16	5.2	17	73	21	60	26	1	2	70	1.07
130870--130920	6	8.0	6	77	18	50	19	0	1	78	0.85
136083--136108	11	2.4	11	100	0	52	53	11	0	34	1.37
146844--147038	38	5.1	37	87	4	248	45	6	7	40	1.58
146840--147038	76	2.6	75	88	5	283	45	7	7	39	1.60
147090--147144	15	3.6	16	77	20	55	30	0	3	65	1.10
147102--147150	11	4.2	12	80	15	57	28	0	2	69	1.00
147102--147160	12	5.0	12	78	15	52	27	1	1	69	1.07
151710--151738	12	2.3	13	94	5	51	58	20	0	20	1.39
159902--159972	36	2.0	36	86	2	99	12	1	26	59	1.42
160479--160623	61	2.4	61	84	2	193	38	12	6	42	1.70
162015--162072	20	2.6	22	89	10	84	25	22	20	31	1.98
165328--165380	15	3.7	15	85	14	76	0	24	0	75	0.80
165328--165383	27	2.1	27	93	6	96	0	25	0	75	0.81
165331--165398	16	4.2	15	74	20	57	1	22	0	76	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
165335--165404	22	3.3	20	74	18	61	2	21	0	75	0.93
168689--168729	2	20.5	2	100	0	82	51	0	0	48	1.00
168884--168973	32	2.9	30	85	4	117	32	24	18	24	1.97
169345--169423	2	39.5	2	100	0	158	49	0	0	50	1.00
171988--172034	19	2.5	19	96	0	85	38	14	2	44	1.58
177771--177827	2	29.0	2	92	3	98	49	1	0	49	1.11

Tables:   1

The End!