Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004790.1 Hibiscus syriacus cultivar Beakdansim tig00010796_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51186

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1679--1705
2
13.5
2
100
0
54
51
0
0
48
1.00
3567--3620
14
3.9
14
75
20
60
50
0
0
50
1.00
3566--3628
15
4.6
14
72
20
53
52
0
0
47
1.00
4157--4185
2
14.5
2
100
0
58
51
0
0
48
1.00
4675--4713
20
2.0
20
85
10
53
35
5
15
43
1.69
6126--6159
17
2.0
17
100
0
68
17
17
29
35
1.93
6146--6325
21
8.6
21
67
7
114
22
17
22
36
1.95
6143--6288
41
3.6
41
95
0
249
22
17
21
37
1.94
6208--6277
20
3.5
20
72
3
77
17
20
21
41
1.90
6265--6313
24
2.0
25
92
4
82
30
16
20
32
1.94
6224--6348
65
1.9
65
93
0
214
22
17
22
37
1.94
6358--6405
19
2.5
19
96
0
87
20
20
16
41
1.90
6477--6507
6
5.2
6
96
0
53
29
54
16
0
1.42
7104--7174
22
3.4
22
73
11
85
36
25
19
18
1.94
7104--7220
41
2.8
44
83
11
140
37
24
18
18
1.94
9540--9577
2
19.0
2
100
0
76
50
0
0
50
1.00
16461--16503
22
2.0
22
82
17
54
32
39
4
23
1.75
21563--21639
31
2.5
31
82
0
91
46
7
0
45
1.32
29301--29352
24
2.2
24
100
0
104
44
13
11
30
1.79
44640--44720
35
2.3
36
89
2
119
45
20
1
32
1.59
44640--44736
36
2.7
35
82
4
106
44
24
2
28
1.65
45216--45502
148
1.9
148
92
0
475
47
9
6
37
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45660--45760
35
2.9
35
80
1
114
28
1
25
43
1.66

Tables:   1

The End!