genome.fa.s4792.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004792.1 Hibiscus syriacus cultivar Beakdansim tig00010802_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85150

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2840--2868	2	14.5	2	100	0	58	0	0	48	51	1.00
4860--4902	22	2.0	22	85	0	59	60	6	0	32	1.23
7348--7400	21	2.5	21	81	0	70	22	18	30	28	1.98
7240--7598	178	2.0	178	98	0	691	23	15	27	32	1.95
7526--7580	21	2.6	21	82	0	74	23	18	29	29	1.98
11524--11582	18	3.2	19	79	13	70	67	0	0	32	0.91
18254--18300	14	3.7	13	76	23	55	10	12	21	55	1.67
18255--18300	24	1.9	24	95	0	83	10	13	19	56	1.66
19170--19212	12	3.7	12	93	3	70	32	20	27	18	1.96
19449--19503	16	3.4	16	84	0	83	10	10	20	58	1.62
19568--19600	16	2.1	16	100	0	66	6	12	24	57	1.57
20312--20349	19	2.0	20	84	5	51	44	0	5	50	1.24
21681--21727	21	2.2	21	96	0	85	17	34	23	25	1.96
21702--21779	34	2.2	35	90	4	122	19	37	23	20	1.95
21892--21933	21	2.0	21	90	0	66	26	21	26	26	1.99
23145--23192	19	2.5	20	82	3	62	52	6	12	29	1.63
24574--24638	33	1.9	35	90	6	107	24	33	21	20	1.97
24768--24810	21	2.0	21	95	0	77	23	20	27	27	1.99
24838--24877	20	1.9	21	85	10	55	37	37	10	15	1.80
41546--41579	14	2.3	15	90	5	52	61	5	11	20	1.50
41606--41658	24	2.3	22	77	6	52	32	18	13	35	1.90
42551--42606	23	2.4	23	85	5	69	44	12	16	26	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43560--43602	22	2.0	22	90	0	68	62	2	2	32	1.20
44426--44454	15	2.0	15	93	6	51	41	6	0	51	1.28
47290--47375	43	2.0	43	97	0	163	23	31	20	24	1.98
51387--52332	106	8.9	106	93	1	1601	33	25	18	22	1.96
55056--55141	43	2.0	43	100	0	172	23	32	20	23	1.98
57246--57286	22	2.0	20	90	9	64	48	36	9	4	1.58
64191--64261	20	3.5	20	83	7	90	30	19	21	28	1.97
65083--65136	24	2.2	24	90	0	81	22	18	18	40	1.91
67495--67764	140	1.9	140	95	0	486	29	12	14	42	1.83
67735--67960	20	11.9	20	73	13	163	34	21	17	26	1.95
67743--67879	55	2.5	54	86	1	193	37	23	16	22	1.93
67999--68056	20	2.9	20	81	0	71	10	18	25	44	1.82
69611--69722	42	2.7	42	81	5	120	22	18	38	20	1.93
70210--70274	20	3.4	18	77	12	67	36	26	18	18	1.94
70495--70544	18	2.8	18	88	8	75	44	8	18	30	1.78
72258--72331	20	3.7	20	92	0	112	40	25	17	16	1.90
72715--72771	22	2.6	22	82	0	78	15	17	43	22	1.87
72935--73033	20	4.9	20	91	0	144	25	22	27	25	2.00

Tables:   1

The End!