genome.fa.s4793.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004793.1 Hibiscus syriacus cultivar Beakdansim tig00010803_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125248

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110--205	17	5.7	18	71	23	84	41	22	25	10	1.85
98--182	14	5.5	14	71	26	57	42	23	24	9	1.84
90--200	33	3.5	33	90	4	176	44	21	24	9	1.83
217--271	14	3.6	14	73	21	56	9	27	23	40	1.85
391--461	33	2.2	33	92	0	115	47	18	22	11	1.80
840--1012	20	8.6	20	82	6	208	18	20	26	34	1.95
839--1012	79	2.2	81	83	4	228	18	20	26	35	1.95
980--1033	19	2.8	19	88	2	81	9	16	27	46	1.78
839--1031	59	3.2	60	80	2	237	17	19	25	36	1.94
1024--1100	21	3.7	20	70	13	57	27	16	23	32	1.96
1086--1137	20	2.6	20	96	0	95	21	13	26	38	1.90
6781--7004	43	5.2	43	82	6	258	23	21	6	48	1.73
6757--7004	85	2.9	84	82	8	286	23	21	7	47	1.75
10201--10346	65	2.3	64	86	9	192	21	18	28	32	1.97
10223--10353	65	2.0	66	91	4	212	19	19	27	33	1.96
10365--10587	64	3.5	65	89	3	319	20	18	26	34	1.96
11535--11570	18	2.0	18	88	0	54	41	30	8	19	1.81
11986--12034	22	2.2	22	92	0	80	28	14	24	32	1.94
11998--12041	22	2.0	22	86	0	61	31	13	22	31	1.93
12659--12708	15	3.4	14	80	5	55	2	16	6	76	1.08
13893--13926	7	4.7	7	85	7	50	55	11	14	17	1.68
29822--29852	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36558--36585	13	2.2	13	100	0	56	35	10	14	39	1.81
37481--37569	2	45.0	2	95	2	162	50	1	0	48	1.08
37555--38009	35	12.9	35	68	21	197	48	4	5	42	1.45
37805--37984	38	4.9	37	71	19	144	49	3	4	42	1.39
37770--37988	108	2.0	108	98	0	422	49	3	4	42	1.41
38027--38071	14	3.1	14	87	3	63	22	2	0	75	0.91
41188--41233	19	2.4	19	100	0	92	10	10	10	67	1.43
44615--45234	84	7.5	84	79	5	695	29	24	21	24	1.99
44615--45239	165	3.8	164	81	5	639	29	24	20	24	1.99
44615--45228	249	2.5	249	94	0	1050	29	24	21	24	1.99
44859--45317	165	2.8	165	84	3	483	29	24	20	25	1.99
45872--45912	2	21.0	2	95	5	75	51	0	0	48	1.00
45899--46053	36	4.2	36	78	10	127	48	4	5	41	1.46
45899--46051	38	4.2	37	79	9	127	48	4	5	41	1.46
45899--46053	72	2.1	75	83	7	192	48	4	5	41	1.46
45958--46169	108	2.0	106	82	7	259	49	5	5	39	1.49
45898--46161	36	7.2	35	71	20	120	48	4	5	41	1.47
46268--46312	14	3.1	14	87	3	63	22	2	0	75	0.91
48129--48213	23	3.6	24	80	13	97	10	11	18	58	1.61
48129--48219	10	8.1	10	72	21	65	10	10	18	59	1.60
48176--48216	14	3.2	14	74	25	54	4	12	24	58	1.53
48144--48216	24	3.1	24	82	11	96	9	12	19	58	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48640--48682	20	2.1	21	87	12	63	44	0	0	55	0.99
48681--48712	14	2.3	14	100	0	64	21	0	6	71	1.07
49379--49423	15	3.2	15	72	18	51	44	0	0	55	0.99
49378--49411	18	1.9	17	94	5	59	44	0	0	55	0.99
49671--49715	21	2.2	20	92	7	74	53	4	4	37	1.41
50638--50709	3	24.0	3	100	0	144	66	0	0	33	0.92
58439--58484	17	2.6	19	80	16	55	45	0	17	36	1.49
65823--65853	10	3.1	10	100	0	62	19	9	70	0	1.14
71840--72064	30	7.4	30	95	1	387	33	23	18	24	1.97
72050--72126	31	2.5	31	82	0	91	32	23	15	28	1.95
72580--72657	2	39.5	2	97	2	149	51	0	0	48	1.00
73228--73270	21	2.0	21	81	0	50	16	25	30	27	1.97
74863--74920	20	2.7	20	86	10	71	24	22	24	29	1.99
77547--77595	22	2.2	22	96	0	89	12	24	40	22	1.88
78710--78747	20	1.9	20	84	10	51	50	2	15	31	1.58
81279--81332	27	2.0	27	88	0	81	38	3	1	55	1.28
81331--81392	18	3.2	21	70	25	57	54	3	0	41	1.16
86137--86327	93	2.1	93	100	0	382	37	15	27	19	1.92
89595--89650	24	2.3	24	90	0	85	14	8	21	55	1.66
91163--91229	16	4.3	16	88	3	93	10	8	19	61	1.54
91161--91221	32	1.9	32	93	0	104	8	11	22	57	1.60
91291--91322	16	2.0	16	100	0	64	6	12	25	56	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98032--98089	28	2.0	31	80	16	70	29	13	3	53	1.56
98557--98606	27	2.0	25	81	14	59	28	10	8	54	1.62
100776--100836	22	2.8	21	82	9	77	40	0	11	47	1.40
101756--101796	18	2.3	18	100	0	82	51	24	4	19	1.66
112610--112652	22	2.0	22	85	0	59	65	11	0	23	1.25
113448--113479	14	2.3	14	94	0	55	68	6	3	21	1.26
116424--116477	21	2.6	21	77	13	67	5	25	0	68	1.11
116426--116460	17	2.0	17	94	5	61	5	28	0	65	1.15
116430--116492	24	2.7	22	77	20	65	4	26	0	68	1.10
117469--117509	7	5.7	7	97	2	73	0	41	12	46	1.41
120738--120776	19	2.1	19	85	0	51	64	2	2	30	1.21

Tables:   1

The End!