Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004794.1 Hibiscus syriacus cultivar Beakdansim tig00010804_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57139

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2507--2704
74
2.7
74
87
3
260
21
25
30
23
1.99
4128--4167
21
1.9
21
89
0
62
10
25
40
25
1.86
4148--4210
20
2.9
21
79
9
65
15
25
34
23
1.95
10470--10525
21
2.5
22
77
5
60
1
23
10
64
1.35
10982--11034
3
17.7
3
96
0
97
64
0
1
33
1.05
11289--11922
113
5.6
113
97
1
1128
30
20
11
36
1.89
12677--13219
83
6.5
83
94
0
908
38
22
11
27
1.89
24884--24932
17
2.8
17
79
11
55
71
2
0
26
0.97
26960--26991
3
10.7
3
93
0
55
62
0
3
34
1.11
26892--27432
292
1.8
296
95
3
986
32
14
14
38
1.86
31797--31841
22
2.0
22
95
0
81
20
48
22
8
1.76
31849--32005
29
5.4
29
76
4
138
28
5
24
42
1.77
31878--32032
29
5.3
29
74
11
129
29
5
22
43
1.75
32767--32804
15
2.6
14
84
15
51
23
10
15
50
1.75
33259--33292
18
1.9
18
88
5
52
20
0
14
64
1.28
33523--33562
20
2.0
20
100
0
80
5
30
25
40
1.77
36337--36384
19
2.6
18
87
6
69
77
0
4
18
0.93
37016--37190
76
2.3
75
80
3
181
56
12
2
29
1.49
38829--38871
9
4.4
10
82
14
54
74
0
4
20
1.00
38829--38871
14
3.0
14
86
3
59
74
0
4
20
1.00
38829--38871
19
2.2
20
88
12
63
74
0
4
20
1.00
38826--38871
5
9.4
5
81
13
51
73
0
4
21
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43448--43562
29
4.0
29
88
0
149
36
23
6
33
1.80
43598--43648
19
2.7
20
87
6
79
25
31
27
15
1.96
50575--50679
29
3.7
29
87
3
142
37
24
6
31
1.81
50681--50722
17
2.4
17
92
4
66
9
21
50
19
1.75
50727--50793
19
3.5
19
85
4
91
19
28
29
22
1.98
51565--51613
19
2.6
18
81
9
62
73
2
4
20
1.10
51862--51900
12
3.2
12
96
3
69
10
30
15
43
1.80
52081--52264
65
2.9
63
91
5
291
54
16
0
27
1.46
52082--52259
62
2.8
64
93
4
290
55
17
0
27
1.43
52284--52322
18
2.1
19
85
4
53
66
7
0
25
1.18

Tables:   1

The End!