Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004795.1 Hibiscus syriacus cultivar Beakdansim tig00010806_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56566

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16--65
16
3.0
17
88
5
75
34
12
6
48
1.65
129--174
19
2.4
19
92
0
74
23
10
32
32
1.90
3014--3049
12
3.0
12
87
0
54
22
25
8
44
1.80
8428--8467
21
1.9
21
85
10
55
37
0
0
62
0.95
9979--10059
14
6.1
14
73
15
55
13
12
17
56
1.67
11040--11098
10
5.7
10
75
15
57
11
11
20
55
1.67
11046--11102
16
3.7
16
83
4
73
12
10
17
59
1.60
13097--13126
2
15.0
2
92
0
51
50
3
0
46
1.18
14668--14708
20
2.0
20
90
4
64
34
0
0
65
0.93
18106--18165
19
3.1
19
81
13
77
31
21
13
33
1.92
21181--21242
29
2.1
29
100
0
124
30
27
19
22
1.98
31173--31247
31
2.5
29
83
12
89
65
2
8
24
1.33
32903--33007
6
16.0
6
79
9
50
53
1
0
43
1.18
32941--32995
2
29.0
2
85
10
80
50
1
0
47
1.11
33197--33450
135
1.9
135
97
1
483
25
22
18
34
1.96
33120--33694
247
2.3
247
86
7
763
25
22
17
35
1.95
33613--33784
92
1.9
90
87
2
254
25
22
13
38
1.91
33711--33910
107
1.8
105
85
6
274
23
22
14
40
1.90
33829--33885
16
3.4
16
69
21
53
21
26
8
43
1.81
34763--34828
16
3.9
17
82
11
73
7
12
0
80
0.91
34761--34829
35
2.0
35
83
11
88
7
11
0
81
0.88
34788--34829
9
4.7
9
82
5
50
7
7
0
85
0.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46134--46208
31
2.5
29
83
12
89
66
2
6
24
1.28
47859--47938
3
25.0
3
82
7
63
56
2
1
40
1.21
47859--47937
26
3.0
26
78
19
83
55
2
1
40
1.21
47853--47938
17
5.1
17
75
20
74
55
2
1
40
1.20
47861--47938
23
3.3
22
77
18
77
56
2
1
39
1.21

Tables:   1

The End!