genome.fa.s4796.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004796.1 Hibiscus syriacus cultivar Beakdansim tig00010807_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72991

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3298--3333	2	18.0	2	100	0	72	0	0	50	50	1.00
8853--8897	21	2.1	21	88	8	65	48	28	0	22	1.50
16924--17025	23	4.5	23	78	8	93	43	1	1	52	1.23
17184--17269	24	3.7	23	73	14	70	44	1	1	53	1.15
17252--17342	34	2.6	35	91	8	150	43	0	6	49	1.28
18976--19031	2	28.0	2	96	0	103	0	51	0	48	1.00
26427--26464	12	3.2	12	81	3	51	76	2	0	21	0.91
26689--26752	6	10.7	6	96	0	119	34	1	48	15	1.55
27058--27103	24	1.9	24	86	8	67	23	4	10	60	1.47
27699--27756	31	1.9	31	89	3	91	50	3	12	34	1.57
29801--29859	28	2.2	26	78	18	68	33	0	15	50	1.44
31549--31615	30	2.3	30	82	10	84	32	2	0	64	1.09
45510--45540	11	2.8	11	90	0	53	64	0	9	25	1.24
46049--46504	182	2.5	182	91	0	723	27	14	12	45	1.81
46375--46616	112	2.2	112	88	1	360	26	13	15	45	1.83
46193--46910	294	2.4	294	89	0	1096	27	14	13	44	1.82
46669--47012	112	3.1	112	91	0	537	26	13	14	45	1.82
46781--47623	293	2.8	305	83	5	1039	27	15	12	45	1.81
46375--47351	405	2.4	406	90	1	1494	27	15	13	44	1.83
47074--47351	111	2.5	112	88	0	396	27	17	12	42	1.85
47250--47444	92	2.1	92	92	0	320	25	15	11	46	1.80
47340--47625	112	2.5	112	91	2	466	24	13	12	48	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47138--47555	204	2.1	203	93	0	701	25	15	12	46	1.80
48005--48032	2	14.0	2	100	0	56	0	50	0	50	1.00
57707--57765	24	2.4	25	82	5	75	49	1	6	42	1.39

Tables:   1

The End!