Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004797.1 Hibiscus syriacus cultivar Beakdansim tig00010808_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 140543
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Found at i:1137 original size:2 final size:2
Alignment explanation
Indices: 1128--1162 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
1118 TCTAGATTTA
1128 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1163 TGTAAAGTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:4200 original size:548 final size:555
Alignment explanation
Indices: 2301--4498 Score: 4004
Period size: 552 Copynumber: 4.0 Consensus size: 555
2291 CCAAGAAAGG
2301 TAACACCTTTTCATTTGAATCCATATGC--ATATTTATGTTTTGTGTTATTGTGGATAAATCCAA
1 TAACACCTTTTCATTTGAATCCATATGCATATATTTATGTTTTGTGTTATTGTGGATAAATCCAA
* *
2364 ACAAATTACC-ATGCATACTAATGAAGAATATTTCA--CTTTA-TGATTTTATTGCTC-ATTTAA
66 ACAAATTACCAATGCATACTAATGAAGCATATTTCACTCTTTATTGATTTTATTGCTCAATATAA
* *
2424 CTAGTCATTCTTAATGGCTAAATTACATTAGTTGGTTGAAAGGACATTT---CTATGAAAGGCTC
131 CTAGTCATTCTTAGTGGCTAAATTACATTGGTTGGTTGAAAGGACATTTCACCTATGAAAGGCTC
*
2486 TTAAAAGATCAACAGATAGTAATCTTCATGCTCAATCCTTAAGGAAGTTAAAGGCGTTATGGATG
196 TTAAAAGATCAACATATAGTAATCTTCATGCTCAATCCTTAAGGAAGTTAAAGGCGTTATGGATG
*
2551 CGTAGGGTAAGGCCTCATTAACTTTGTGTTATGACTTCATAACCTTTTGCAGGTTCAAAG-AAAG
261 CGTAGGGTAAGGCCTCATTAACTTTGTGTTATGACTTCAGAACCTTTTGCAGGTTCAAAGAAAAG
2615 AA--TCTATTTTTATCCCATCCACAAGCCTTGATGTAACGTGATAAGGCTCGTAATTTTTGTATG
326 AATCTCTATTTTTATCCCATCCACAAGCCTTGATGTAACGTGATAAGGCTCGTAATTTTTGTATG
*
2678 ATGAATGGTGAATTTCGATCAAGAAATTGAAAAGGTATGTGTATCTATACATTGAGATTGTACTA
391 ATGAATGGTGAATTTCGATCAAGAAATCGAAAAGGTATGTGTATCTATACATTGAGATTGTACTA
2743 TTGTTTCAGGTTTTATTAAATTCTCACCGTTCAACAGAAGTTAGTCTTTTTCAAGATTTAATTTA
456 TTGTTTCAGG-TTTATTAAATTCTCACCGTTCAACAGAAGTTAGTCTTTTTCAAGATTTAATTTA
2808 TTAAATTCTCGTCCTTTAACAGAAATTGGTTATGTT
520 TTAAATTCTCGTCCTTTAACAGAAATTGGTTATGTT
2844 TAACACCTTTTCATTTGAATCCATATGCATATATTTATGTTTTGTGTTATTGTGGATAAATCCAA
1 TAACACCTTTTCATTTGAATCCATATGCATATATTTATGTTTTGTGTTATTGTGGATAAATCCAA
2909 ACAAATTA-CAATGCATACTAATGAAGCATATTTCACTCTTTATTGATTTTATTGCTCAATATAA
66 ACAAATTACCAATGCATACTAATGAAGCATATTTCACTCTTTATTGATTTTATTGCTCAATATAA
2973 CTAGTCATTCTTAGTGGCTAAATTACATTGGTTGGTTGAAAGGACATTTCACCTATGAAAGGCTC
131 CTAGTCATTCTTAGTGGCTAAATTACATTGGTTGGTTGAAAGGACATTTCACCTATGAAAGGCTC
3038 TTAAAAGATCAACATATAGTAATCTTCATGCTCAATCCTTAAGGAAGTTAAAGGCGTTATGGATG
196 TTAAAAGATCAACATATAGTAATCTTCATGCTCAATCCTTAAGGAAGTTAAAGGCGTTATGGATG
*
3103 CGTAGGGTAAGGCCTCATTAACTTTGTGTTATGACTTCATAACCTTTTGCAGGTTCAAAGAAAAG
261 CGTAGGGTAAGGCCTCATTAACTTTGTGTTATGACTTCAGAACCTTTTGCAGGTTCAAAGAAAAG
3168 AATCTCTATTTTTATCCCATCCACAAGCCTTGATGTAACGTGATAAGGCTCGTAATTTTTTGTAT
326 AATCTCTATTTTTATCCCATCCACAAGCCTTGATGTAACGTGATAAGGCTCGTAA-TTTTTGTAT
*
3233 GATGAATGGTGAATTTCGATCAAGAAATTGAAAAGGTATGTGTATCTATACATTGAGATTGTACT
390 GATGAATGGTGAATTTCGATCAAGAAATCGAAAAGGTATGTGTATCTATACATTGAGATTGTACT
3298 ATTGTTTCAGGTTTTATTAAATTCTCACCGTTCAACAGAAGTTAGTCTTTTTCAAGATTTAA--T
455 ATTGTTTCAGG-TTTATTAAATTCTCACCGTTCAACAGAAGTTAGTCTTTTTCAAGATTTAATTT
3361 ATTAAATTCTCGTCCTTTAACAGAAATTGGTTATGTT
519 ATTAAATTCTCGTCCTTTAACAGAAATTGGTTATGTT
3398 T-A-ACCTTTTCATTTGAATCCATATGCATATATTTATG-TTTGTGTTATTGTGGATAAATCCAA
1 TAACACCTTTTCATTTGAATCCATATGCATATATTTATGTTTTGTGTTATTGTGGATAAATCCAA
3460 ACAAATTACCAATGCATACTAATGAAGCATATTTCACTCTTTATTGATTTTATTGCTCAATATAA
66 ACAAATTACCAATGCATACTAATGAAGCATATTTCACTCTTTATTGATTTTATTGCTCAATATAA
3525 CTAGTCATTCTTAGTGGCTAAATTACATTGGTTGGTTGAAAGGACATTTCACCTATGAAAGGCTC
131 CTAGTCATTCTTAGTGGCTAAATTACATTGGTTGGTTGAAAGGACATTTCACCTATGAAAGGCTC
3590 TTAAAAGATCAACATATAGTAATCTTCATGCTCAATCCTTAAGGAAGTTAAAGGCGTTATGGATG
196 TTAAAAGATCAACATATAGTAATCTTCATGCTCAATCCTTAAGGAAGTTAAAGGCGTTATGGAT-
3655 GCGTAGGGTAAGGCCTCATTAACTTTGTGTTATGACTTCAGAACCTTTTGCAGGTTCAAAGAAAA
260 GCGTAGGGTAAGGCCTCATTAACTTTGTGTTATGACTTCAGAACCTTTTGCAGGTTCAAAGAAAA
3720 GAATCTCTA-TTTTATCCCATCCACAAGCCTTGATGTAACGTGATAAGGCTCGTAATTTTTGTAT
325 GAATCTCTATTTTTATCCCATCCACAAGCCTTGATGTAACGTGATAAGGCTCGTAATTTTTGTAT
3784 GATGAATGGTGAATTTCGATCAAGAAATCG-AAAGGTATGTGTATCTATACATTGAGATTGTACT
390 GATGAATGGTGAATTTCGATCAAGAAATCGAAAAGGTATGTGTATCTATACATTGAGATTGTACT
3848 ATTG-TTCAGG-TT-TTAAATTCTCACCGTTCAACAGAAGTTAGTC-TTTTCAAGATTTAATTTA
455 ATTGTTTCAGGTTTATTAAATTCTCACCGTTCAACAGAAGTTAGTCTTTTTCAAGATTTAATTTA
3909 TTAAATTCTCGTCCTTTAACAGAAA-TGGTTATGTT
520 TTAAATTCTCGTCCTTTAACAGAAATTGGTTATGTT
3944 TAACACCTTTTCATTTGAATCCATATGCATATATTTAT-TTTTGTGTTATTGTGGATAAATCCAA
1 TAACACCTTTTCATTTGAATCCATATGCATATATTTATGTTTTGTGTTATTGTGGATAAATCCAA
*
4008 ACAAATTACCAATGCATACTAATGAAGCATATTTCACTCTTTATTGATTTTATTGCTCAATTTAA
66 ACAAATTACCAATGCATACTAATGAAGCATATTTCACTCTTTATTGATTTTATTGCTCAATATAA
4073 CTAGTCATTCTTAGTGGCTAAATTACATTGGTTGGTTGAAAGGACATTTCACCTATGAAAGGCTC
131 CTAGTCATTCTTAGTGGCTAAATTACATTGGTTGGTTGAAAGGACATTTCACCTATGAAAGGCTC
*
4138 TTAAAAGATCAACATATAGTAATCTTCATGCTCAATCCTTAAGGAAGTTAAAGGCATTATGGATG
196 TTAAAAGATCAACATATAGTAATCTTCATGCTCAATCCTTAAGGAAGTTAAAGGCGTTATGGATG
4203 CGTAGGGTAAGGCCTCATTAACTTTGTGTTATGACTTCAGAACCTTTTGCAGGTTCAAAGAAAAG
261 CGTAGGGTAAGGCCTCATTAACTTTGTGTTATGACTTCAGAACCTTTTGCAGGTTCAAAGAAAAG
*
4268 AATCTCTATTTTTATCCCATCCACAAGCCTTGATGTAACGTGATAAGGCTCGTAATTGTTTGTGT
326 AATCTCTATTTTTATCCCATCCACAAGCCTTGATGTAACGTGATAAGGCTCGTAATT-TTTGTAT
4333 GATGAATGGTGAATTTCGATCAAGAAATCGAAAAGGTATGTGTATCTATACATTGAGATTGTACT
390 GATGAATGGTGAATTTCGATCAAGAAATCGAAAAGGTATGTGTATCTATACATTGAGATTGTACT
*
4398 ATTGTTTCAGGTTTTATTAAATTCTCACCGTTCAACAGAAGTTAGTTTTTTTCAAGA-TTAATTT
455 ATTGTTTCAGG-TTTATTAAATTCTCACCGTTCAACAGAAGTTAGTCTTTTTCAAGATTTAATTT
* *
4462 ATT-AATTCTCATCCTTTAACAAAAATTGGTTATGTT
519 ATTAAATTCTCGTCCTTTAACAGAAATTGGTTATGTT
4498 T
1 T
4499 TGGGTTTTAA
Statistics
Matches: 1612, Mismatches: 13, Indels: 49
0.96 0.01 0.03
Matches are distributed among these distances:
543 28 0.02
544 1 0.00
545 81 0.05
546 42 0.03
547 109 0.07
548 313 0.19
549 94 0.06
550 76 0.05
551 77 0.05
552 403 0.25
553 102 0.06
554 90 0.06
555 60 0.04
556 136 0.08
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (555 bp):
TAACACCTTTTCATTTGAATCCATATGCATATATTTATGTTTTGTGTTATTGTGGATAAATCCAA
ACAAATTACCAATGCATACTAATGAAGCATATTTCACTCTTTATTGATTTTATTGCTCAATATAA
CTAGTCATTCTTAGTGGCTAAATTACATTGGTTGGTTGAAAGGACATTTCACCTATGAAAGGCTC
TTAAAAGATCAACATATAGTAATCTTCATGCTCAATCCTTAAGGAAGTTAAAGGCGTTATGGATG
CGTAGGGTAAGGCCTCATTAACTTTGTGTTATGACTTCAGAACCTTTTGCAGGTTCAAAGAAAAG
AATCTCTATTTTTATCCCATCCACAAGCCTTGATGTAACGTGATAAGGCTCGTAATTTTTGTATG
ATGAATGGTGAATTTCGATCAAGAAATCGAAAAGGTATGTGTATCTATACATTGAGATTGTACTA
TTGTTTCAGGTTTATTAAATTCTCACCGTTCAACAGAAGTTAGTCTTTTTCAAGATTTAATTTAT
TAAATTCTCGTCCTTTAACAGAAATTGGTTATGTT
Found at i:6345 original size:21 final size:21
Alignment explanation
Indices: 6321--6367 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
6311 AACAATTCTC
*
6321 TTCATGAAAAGATTAAATCCT
1 TTCATGAAAAGATTAAACCCT
* * *
6342 TTCACGAAAAGGTTAAGCCCT
1 TTCATGAAAAGATTAAACCCT
6363 TTCAT
1 TTCAT
6368 CACGGTTGTG
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.32
Consensus pattern (21 bp):
TTCATGAAAAGATTAAACCCT
Found at i:6619 original size:3 final size:3
Alignment explanation
Indices: 6613--6637 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
6603 ATAATAATAT
6613 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
6638 CATCATCATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:6842 original size:18 final size:17
Alignment explanation
Indices: 6801--6849 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
6791 GTTACTGAAT
6801 ATAAAAATTTTTAAAAA
1 ATAAAAATTTTTAAAAA
*
6818 AT-TAAATTGTTTAAAAA
1 ATAAAAATT-TTTAAAAA
* *
6835 GTAAAAATTATTAAA
1 ATAAAAATTTTTAAA
6850 CATTACTTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
16 5 0.19
17 16 0.62
18 5 0.19
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (17 bp):
ATAAAAATTTTTAAAAA
Found at i:8139 original size:22 final size:21
Alignment explanation
Indices: 8114--8154 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
8104 TATAAAAAAT
8114 TATTTTTATTAAATATTTTTTG
1 TATTTTTATTAAAT-TTTTTTG
*
8136 TATTTTTATTTAATTTTTT
1 TATTTTTATTAAATTTTTT
8155 AAATAATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (21 bp):
TATTTTTATTAAATTTTTTTG
Found at i:13570 original size:3 final size:3
Alignment explanation
Indices: 13564--13617 Score: 54
Period size: 3 Copynumber: 17.7 Consensus size: 3
13554 ATTTTTTTTA
* * * * *
13564 TAT TAT TAT TATT TAT TAA TAA TAA TAA TAT TAT TAT TAA TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
13610 TAT TAT TA
1 TAT TAT TA
13618 CATGCCCGAA
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
3 43 0.93
4 3 0.07
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:15742 original size:16 final size:16
Alignment explanation
Indices: 15694--15745 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
15684 ATTATTTTTA
*
15694 TTTTTATTTTATT-A-
1 TTTTTATTTGATTAAT
15708 TTTTTATCATTGTATTAAT
1 TTTTTAT--TTG-ATTAAT
15727 TTTTTATTTGATTAAT
1 TTTTTATTTGATTAAT
15743 TTT
1 TTT
15746 CAGACATTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
14 7 0.22
16 11 0.34
17 6 0.19
18 1 0.03
19 7 0.22
ACGTcount: A:0.23, C:0.02, G:0.04, T:0.71
Consensus pattern (16 bp):
TTTTTATTTGATTAAT
Found at i:22048 original size:246 final size:247
Alignment explanation
Indices: 21611--22112 Score: 853
Period size: 246 Copynumber: 2.0 Consensus size: 247
21601 TTCGTGCCAT
*
21611 TCATAAGACCTTCAGACATGTTGTTTTCAAATGAGATTTTTTTAAAAAAAAAAGCCTTTATGGGG
1 TCATAAGACCTTCAGACATGATGTTTTCAAATGAGA--TTTTTAAAAAAAAAAGCCTTTATGGGG
* * * *
21676 TTTATTAATTATCTCAAAAGAGTTGTTAAAGGATGTTAAGCTTAAAAAATGGGTTCCTTGACAAC
64 TTTATTAATTATCTCAAAAGAGTTGTTAAAGGAAGCTAAGCCTAAAAAAGGGGTTCCTTGACAAC
*
21741 TAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATTTGTAAATCCTTTGGGTCATCAGTAAGTC
129 TAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATTTGTAAATCCTTCGGGTCATCAGTAAGTC
*
21806 TTTCGAGCATGATGCTTAAATCCTTCAGGTCATCTGTAAGCCTTTCGAGCAAGA
194 TTTCGAGCATGATGCTTAAATCATTCAGGTCATCTGTAAGCCTTTCGAGCAAGA
* **
21860 TCATAAGACCTTCAGGCATGATGTTTTCAAATGAGA-TTTTAAAAAACTAAGCCTTTATGGGGTT
1 TCATAAGACCTTCAGACATGATGTTTTCAAATGAGATTTTTAAAAAAAAAAGCCTTTATGGGGTT
*
21924 TCTTAATTATCTCAAAAGAGTTGTTAAAGGAAGCTAAGCCTAAAAAAGGGGTTCCTTGACAACTA
66 TATTAATTATCTCAAAAGAGTTGTTAAAGGAAGCTAAGCCTAAAAAAGGGGTTCCTTGACAACTA
21989 AGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATTTGTAAATCCTTCGGGTCATCAGTAAGTCTT
131 AGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATTTGTAAATCCTTCGGGTCATCAGTAAGTCTT
**
22054 TCGAGCATGATGCTTAAATCATTTGGGTCATCTGTAAGCCTTTCGAGCAAGA
196 TCGAGCATGATGCTTAAATCATTCAGGTCATCTGTAAGCCTTTCGAGCAAGA
*
22106 TGATAAG
1 TCATAAG
22113 TCATTCGGGC
Statistics
Matches: 239, Mismatches: 14, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
246 205 0.86
249 34 0.14
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (247 bp):
TCATAAGACCTTCAGACATGATGTTTTCAAATGAGATTTTTAAAAAAAAAAGCCTTTATGGGGTT
TATTAATTATCTCAAAAGAGTTGTTAAAGGAAGCTAAGCCTAAAAAAGGGGTTCCTTGACAACTA
AGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATTTGTAAATCCTTCGGGTCATCAGTAAGTCTT
TCGAGCATGATGCTTAAATCATTCAGGTCATCTGTAAGCCTTTCGAGCAAGA
Found at i:22085 original size:42 final size:42
Alignment explanation
Indices: 22026--22121 Score: 122
Period size: 42 Copynumber: 2.3 Consensus size: 42
22016 TCTTGATTTG
* * *
22026 TAAATCCTTCGGGTCATCAGTAAGTCTTTCGAGCATGATGCT
1 TAAATCATTCGGGTCATCAGTAAGCCTTTCGAGCAAGATGCT
* * *
22068 TAAATCATTTGGGTCATCTGTAAGCCTTTCGAGCAAGATG-A
1 TAAATCATTCGGGTCATCAGTAAGCCTTTCGAGCAAGATGCT
*
22109 TAAGTCATTCGGG
1 TAAATCATTCGGG
22122 CTATTCATAA
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
41 11 0.24
42 35 0.76
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (42 bp):
TAAATCATTCGGGTCATCAGTAAGCCTTTCGAGCAAGATGCT
Found at i:22557 original size:3 final size:3
Alignment explanation
Indices: 22544--22573 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
22534 TTGTCCCATT
22544 TTA TGTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA TT
22574 GCAGGCCTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:22848 original size:22 final size:22
Alignment explanation
Indices: 22820--22895 Score: 98
Period size: 22 Copynumber: 3.5 Consensus size: 22
22810 ACTGCTCTAT
*
22820 GGTGAGTCACCAACGTAGCTTC
1 GGTGAGTCACCATCGTAGCTTC
*
22842 GGTGAGTCACTATCGTAGCTTC
1 GGTGAGTCACCATCGTAGCTTC
* * *
22864 GGTAAGGCACCATCCTAGCTTC
1 GGTGAGTCACCATCGTAGCTTC
*
22886 GGTGACTCAC
1 GGTGAGTCAC
22896 TTAGGGCTAC
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 45 1.00
ACGTcount: A:0.21, C:0.28, G:0.26, T:0.25
Consensus pattern (22 bp):
GGTGAGTCACCATCGTAGCTTC
Found at i:32682 original size:31 final size:31
Alignment explanation
Indices: 32644--32706 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
32634 ATAGTATGAT
*
32644 ATTGTTGGTTACCAATTCAAAACGAGTTTCA
1 ATTGTTGGTTACCAATTCAAAACCAGTTTCA
32675 ATTGTTGGTTACCAATTCAAAACCAGTTTCA
1 ATTGTTGGTTACCAATTCAAAACCAGTTTCA
32706 A
1 A
32707 GCAGTGATAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.35
Consensus pattern (31 bp):
ATTGTTGGTTACCAATTCAAAACCAGTTTCA
Found at i:32910 original size:15 final size:15
Alignment explanation
Indices: 32890--32918 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
32880 TTCATGTCAT
32890 CTAGAACTTTTAGAG
1 CTAGAACTTTTAGAG
32905 CTAGAACTTTTAGA
1 CTAGAACTTTTAGA
32919 ACATAGTAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.34
Consensus pattern (15 bp):
CTAGAACTTTTAGAG
Found at i:34297 original size:31 final size:31
Alignment explanation
Indices: 34230--34289 Score: 88
Period size: 29 Copynumber: 2.0 Consensus size: 31
34220 CAATTTAAGG
*
34230 CAAAATGATTTTTGGACTTGAATTGAATTTA
1 CAAAATGATATTTGGACTTGAATTGAATTTA
*
34261 CAAAATG-TATTTGGACTT-AATTGATTTTA
1 CAAAATGATATTTGGACTTGAATTGAATTTA
34290 TTCAAAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 10 0.37
30 10 0.37
31 7 0.26
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.43
Consensus pattern (31 bp):
CAAAATGATATTTGGACTTGAATTGAATTTA
Found at i:35142 original size:29 final size:31
Alignment explanation
Indices: 35090--35148 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 31
35080 AATTTAAGGC
*
35090 AAAATGATTTTTGGACTTGAATTGAATTTAA
1 AAAATGATATTTGGACTTGAATTGAATTTAA
35121 AAAATG-TATTTGGACTT-AATTGAATTTA
1 AAAATGATATTTGGACTTGAATTGAATTTA
35149 TTCAAAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 11 0.41
30 10 0.37
31 6 0.22
ACGTcount: A:0.39, C:0.03, G:0.15, T:0.42
Consensus pattern (31 bp):
AAAATGATATTTGGACTTGAATTGAATTTAA
Found at i:35404 original size:21 final size:21
Alignment explanation
Indices: 35378--35419 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
35368 ATTTGAATAT
*
35378 TATGAAGGGGTATCGATTCCC
1 TATGAAGGGGTACCGATTCCC
35399 TATGAAGGGGTACCGATTCCC
1 TATGAAGGGGTACCGATTCCC
35420 CCCATTCTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (21 bp):
TATGAAGGGGTACCGATTCCC
Found at i:35486 original size:20 final size:22
Alignment explanation
Indices: 35448--35487 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
35438 TTTGAGTATA
35448 AAAATCATCCCCAAACGGCTCC
1 AAAATCATCCCCAAACGGCTCC
35470 AAAA-CATCCCC-AACGGCT
1 AAAATCATCCCCAAACGGCT
35488 ATATACGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.39
21 7 0.39
22 4 0.22
ACGTcount: A:0.38, C:0.40, G:0.10, T:0.12
Consensus pattern (22 bp):
AAAATCATCCCCAAACGGCTCC
Found at i:35740 original size:34 final size:32
Alignment explanation
Indices: 35701--35770 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 32
35691 TTTTGTAAAG
*
35701 GGGAAAGATTCTAGCTTAGCCCGTGTAAAAGCTA
1 GGGAAAGATTCTAGCTTAGCCCG-G-AAAAACTA
* *
35735 GGGAAAGGTTCTAGTTTAGCCCGGAAAAACTA
1 GGGAAAGATTCTAGCTTAGCCCGGAAAAACTA
35767 GGGA
1 GGGA
35771 GTTTGTAAGG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 11 0.33
33 1 0.03
34 21 0.64
ACGTcount: A:0.33, C:0.16, G:0.30, T:0.21
Consensus pattern (32 bp):
GGGAAAGATTCTAGCTTAGCCCGGAAAAACTA
Found at i:36533 original size:21 final size:21
Alignment explanation
Indices: 36494--36535 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
36484 TATTTGAATA
*
36494 TTATGAAGGGGTATAGATTCC
1 TTATGAAGGGGTACAGATTCC
*
36515 TTATGAAGGGGTACCGATTCC
1 TTATGAAGGGGTACAGATTCC
36536 CCCCATTCTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (21 bp):
TTATGAAGGGGTACAGATTCC
Found at i:36603 original size:20 final size:22
Alignment explanation
Indices: 36565--36604 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
36555 TTTGAGTATA
36565 AAAATCATCCCCAAACGGCTCC
1 AAAATCATCCCCAAACGGCTCC
36587 AAAA-CATCCCC-AACGGCT
1 AAAATCATCCCCAAACGGCT
36605 ATATACGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.39
21 7 0.39
22 4 0.22
ACGTcount: A:0.38, C:0.40, G:0.10, T:0.12
Consensus pattern (22 bp):
AAAATCATCCCCAAACGGCTCC
Found at i:36857 original size:34 final size:32
Alignment explanation
Indices: 36818--36887 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 32
36808 TTTTGTAAAG
*
36818 GGGAAAGGTTCTAGCTTAGCCCGTGTAAAAGCTA
1 GGGAAAGGTTCTAGCTTAGCCCG-G-AAAAACTA
* *
36852 GGGAAATGTTCTAGTTTAGCCCGGAAAAACTA
1 GGGAAAGGTTCTAGCTTAGCCCGGAAAAACTA
36884 GGGA
1 GGGA
36888 GTTTGTAAGG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 11 0.33
33 1 0.03
34 21 0.64
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.23
Consensus pattern (32 bp):
GGGAAAGGTTCTAGCTTAGCCCGGAAAAACTA
Found at i:43490 original size:12 final size:11
Alignment explanation
Indices: 43473--43506 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
43463 TAGTAACAAC
43473 AAATAAAAATGT
1 AAATAAAAAT-T
43485 AAATAAATAATT
1 AAATAAA-AATT
43497 AAATAAAAAT
1 AAATAAAAAT
43507 AATATGCACA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 3 0.14
12 15 0.71
13 3 0.14
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (11 bp):
AAATAAAAATT
Found at i:44039 original size:21 final size:21
Alignment explanation
Indices: 44010--44064 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
44000 ATTCTGACTA
44010 TCGCATTGCGATTTCCCAAAT
1 TCGCATTGCGATTTCCCAAAT
* * *
44031 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTCCCAAAT
*
44052 TCGCAATGCGATT
1 TCGCATTGCGATT
44065 ACGTAAATCG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.36
Consensus pattern (21 bp):
TCGCATTGCGATTTCCCAAAT
Found at i:44077 original size:20 final size:20
Alignment explanation
Indices: 44052--44122 Score: 142
Period size: 20 Copynumber: 3.5 Consensus size: 20
44042 TTTTCCTAAT
44052 TCGCAATGCGATTACGTAAA
1 TCGCAATGCGATTACGTAAA
44072 TCGCAATGCGATTACGTAAA
1 TCGCAATGCGATTACGTAAA
44092 TCGCAATGCGATTACGTAAA
1 TCGCAATGCGATTACGTAAA
44112 TCGCAATGCGA
1 TCGCAATGCGA
44123 ATCTGACTAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 51 1.00
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (20 bp):
TCGCAATGCGATTACGTAAA
Found at i:44739 original size:20 final size:20
Alignment explanation
Indices: 44714--44762 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
44704 CTACGAGTGA
44714 ATCGCAACGCGAAA-ATGACT
1 ATCGCAACGC-AAATATGACT
* *
44734 ATCGCAATGCAAATTTGACT
1 ATCGCAACGCAAATATGACT
44754 ATCGCAACG
1 ATCGCAACG
44763 AGAGAATCGC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 3 0.12
20 22 0.88
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.20
Consensus pattern (20 bp):
ATCGCAACGCAAATATGACT
Found at i:44849 original size:20 final size:20
Alignment explanation
Indices: 44806--44873 Score: 84
Period size: 20 Copynumber: 3.4 Consensus size: 20
44796 CGATTCTTGC
* *
44806 GTTGCGATAGTCAAATTT-GC
1 GTTGCGATAGTC-ATTTTCGT
44826 GTTGCGATAGTCATTTTCGT
1 GTTGCGATAGTCATTTTCGT
**
44846 GTTGCGATTTTCATTTTCGT
1 GTTGCGATAGTCATTTTCGT
44866 GTTGCGAT
1 GTTGCGAT
44874 TTAAAGTTCG
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
19 4 0.09
20 39 0.91
ACGTcount: A:0.16, C:0.15, G:0.25, T:0.44
Consensus pattern (20 bp):
GTTGCGATAGTCATTTTCGT
Found at i:46785 original size:20 final size:20
Alignment explanation
Indices: 46760--46883 Score: 161
Period size: 20 Copynumber: 6.5 Consensus size: 20
46750 AGAATAGTTT
46760 ACTATCGCAATGCGAAAATG
1 ACTATCGCAATGCGAAAATG
*
46780 ACTATCGCAATGCGAAAATA
1 ACTATCGCAATGCGAAAATG
*
46800 ACTATCGCAA--CG-AGA-G
1 ACTATCGCAATGCGAAAATG
46816 A--ATCGCAATGCGAAAATG
1 ACTATCGCAATGCGAAAATG
*
46834 ACTATCGCAATGTGAAAATG
1 ACTATCGCAATGCGAAAATG
**
46854 ACTATCGCAATGCGAATTTG
1 ACTATCGCAATGCGAAAATG
46874 ACTATCGCAA
1 ACTATCGCAA
46884 CGAAAGAATC
Statistics
Matches: 90, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
14 7 0.08
16 3 0.03
17 4 0.04
18 4 0.04
20 72 0.80
ACGTcount: A:0.40, C:0.20, G:0.19, T:0.21
Consensus pattern (20 bp):
ACTATCGCAATGCGAAAATG
Found at i:46826 original size:34 final size:34
Alignment explanation
Indices: 46783--46904 Score: 145
Period size: 34 Copynumber: 3.4 Consensus size: 34
46773 GAAAATGACT
* *
46783 ATCGCAATGCGAAAATAACTATCGCAACGAGAGA
1 ATCGCAATGCGAAAATGACTATCGCAACGAAAGA
*
46817 ATCGCAATGCGAAAATGACTATCGCAATGTGAAAATGA
1 ATCGCAATGCGAAAATGACTATCGCAA--CG-AAA-GA
**
46855 CTATCGCAATGCGAATTTGACTATCGCAACGAAAGA
1 --ATCGCAATGCGAAAATGACTATCGCAACGAAAGA
46891 ATCGCAATGCGAAA
1 ATCGCAATGCGAAA
46905 TGAAAATCGA
Statistics
Matches: 75, Mismatches: 7, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
34 39 0.52
36 3 0.04
37 5 0.07
38 3 0.04
40 25 0.33
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.19
Consensus pattern (34 bp):
ATCGCAATGCGAAAATGACTATCGCAACGAAAGA
Found at i:46881 original size:74 final size:74
Alignment explanation
Indices: 46760--46904 Score: 245
Period size: 74 Copynumber: 2.0 Consensus size: 74
46750 AGAATAGTTT
*
46760 ACTATCGCAATGCGAAAATGACTATCGCAATGCGAAAATAACTATCGCAACGAGAGAATCGCAAT
1 ACTATCGCAATGCGAAAATGACTATCGCAATGCGAAAATAACTATCGCAACGAAAGAATCGCAAT
46825 GCGAAAATG
66 GCGAAAATG
* ** *
46834 ACTATCGCAATGTGAAAATGACTATCGCAATGCGAATTTGACTATCGCAACGAAAGAATCGCAAT
1 ACTATCGCAATGCGAAAATGACTATCGCAATGCGAAAATAACTATCGCAACGAAAGAATCGCAAT
46899 GCGAAA
66 GCGAAA
46905 TGAAAATCGA
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
74 66 1.00
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.19
Consensus pattern (74 bp):
ACTATCGCAATGCGAAAATGACTATCGCAATGCGAAAATAACTATCGCAACGAAAGAATCGCAAT
GCGAAAATG
Found at i:46955 original size:20 final size:20
Alignment explanation
Indices: 46930--46976 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
46920 GATTCTCTCG
46930 TTGCGATAGTCAAATTCGCA
1 TTGCGATAGTCAAATTCGCA
** *
46950 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCAAATTCGCA
46970 TTGCGAT
1 TTGCGAT
46977 TTTGTTGTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.36
Consensus pattern (20 bp):
TTGCGATAGTCAAATTCGCA
Found at i:47030 original size:33 final size:33
Alignment explanation
Indices: 46950--47031 Score: 101
Period size: 33 Copynumber: 2.5 Consensus size: 33
46940 CAAATTCGCA
* * * *
46950 TTGCGATAGTCATTTTCGCGTTGCGATTTTGTTG
1 TTGCGATAGTCA-TTTCGCATTGCGATTCTCTCG
**
46984 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATAGTCATTTCGCATTGCGATTCTCTCG
47017 TTGCGATAGTCATTT
1 TTGCGATAGTCATTT
47032 TCGCGTTACG
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
33 30 0.75
34 10 0.25
ACGTcount: A:0.13, C:0.18, G:0.22, T:0.46
Consensus pattern (33 bp):
TTGCGATAGTCATTTCGCATTGCGATTCTCTCG
Found at i:47618 original size:21 final size:21
Alignment explanation
Indices: 47527--47631 Score: 95
Period size: 21 Copynumber: 5.0 Consensus size: 21
47517 GACTCACCTG
*
47527 TCATCGTTCAAGAGGCCTCCCC
1 TCATCGTTCAAGAGGCC-CCTC
*
47549 T-ATCGTTCAAGAGGCCCCTA
1 TCATCGTTCAAGAGGCCCCTC
** *
47569 TCATCCCTCAAGAGTCCCCTC
1 TCATCGTTCAAGAGGCCCCTC
* * * *
47590 CCACCGTTCAAGAGGCCACTG
1 TCATCGTTCAAGAGGCCCCTC
* *
47611 TCATCGTTGAAGAGGTCCCTC
1 TCATCGTTCAAGAGGCCCCTC
47632 CCAACATTCT
Statistics
Matches: 63, Mismatches: 19, Indels: 3
0.74 0.22 0.04
Matches are distributed among these distances:
20 3 0.05
21 59 0.94
22 1 0.02
ACGTcount: A:0.21, C:0.37, G:0.19, T:0.23
Consensus pattern (21 bp):
TCATCGTTCAAGAGGCCCCTC
Found at i:47624 original size:42 final size:42
Alignment explanation
Indices: 47524--47634 Score: 118
Period size: 42 Copynumber: 2.6 Consensus size: 42
47514 CCCGACTCAC
* * * *
47524 CTGTCATCGTTCAAGAGGCCTCC-CCTATCGTTCAAGAGGCCC
1 CTGTCATCGTTCAAGAGTCC-CCTCCCACCGTTCAAGAGGCCA
* **
47566 CTATCATCCCTCAAGAGTCCCCTCCCACCGTTCAAGAGGCCA
1 CTGTCATCGTTCAAGAGTCCCCTCCCACCGTTCAAGAGGCCA
*
47608 CTGTCATCGTTGAAGAGGT-CCCTCCCA
1 CTGTCATCGTTCAAGA-GTCCCCTCCCA
47635 ACATTCTAGA
Statistics
Matches: 56, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
41 2 0.04
42 52 0.93
43 2 0.04
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.23
Consensus pattern (42 bp):
CTGTCATCGTTCAAGAGTCCCCTCCCACCGTTCAAGAGGCCA
Found at i:49005 original size:14 final size:14
Alignment explanation
Indices: 48986--49021 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
48976 ATTGTTTAAT
48986 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
49000 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
49014 TGATTTGT
1 TGATTTGT
49022 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:49211 original size:34 final size:33
Alignment explanation
Indices: 49134--49216 Score: 121
Period size: 33 Copynumber: 2.5 Consensus size: 33
49124 TGGCAACGCG
** *
49134 GAAATGACTATCGCAACGAGAGAATCGCAATGC
1 GAAATGAAAATCGCAACGAGAGAATCACAATGC
*
49167 GAAATGAAAATCGCAACGAGTGAATCACAATGC
1 GAAATGAAAATCGCAACGAGAGAATCACAATGC
49200 GAAAATGAAAATCGCAA
1 G-AAATGAAAATCGCAA
49217 TGCGAAACTA
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
33 30 0.67
34 15 0.33
ACGTcount: A:0.46, C:0.18, G:0.22, T:0.14
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCACAATGC
Found at i:49217 original size:20 final size:19
Alignment explanation
Indices: 49156--49223 Score: 74
Period size: 19 Copynumber: 3.8 Consensus size: 19
49146 GCAACGAGAG
49156 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
49175 AATCGCAA--CG-AGTG--
1 AATCGCAATGCGAAATGAA
*
49189 AATCACAATGCGAAAATGAA
1 AATCGCAATGCG-AAATGAA
49209 AATCGCAATGCGAAA
1 AATCGCAATGCGAAA
49224 CTAATTTCGC
Statistics
Matches: 39, Mismatches: 4, Indels: 12
0.71 0.07 0.22
Matches are distributed among these distances:
14 7 0.18
16 5 0.13
17 2 0.05
18 3 0.08
19 11 0.28
20 11 0.28
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.15
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:49249 original size:19 final size:19
Alignment explanation
Indices: 49227--49314 Score: 105
Period size: 19 Copynumber: 4.8 Consensus size: 19
49217 TGCGAAACTA
*
49227 ATTTCGCGTTGCGATTTTC
1 ATTTCGCATTGCGATTTTC
49246 ATTTTCGCATTGCGA--TTC
1 A-TTTCGCATTGCGATTTTC
*
49264 A---CTCATTGCGATTTTC
1 ATTTCGCATTGCGATTTTC
*
49280 ATTTCGCATTGTGATTTTC
1 ATTTCGCATTGCGATTTTC
49299 ATTTCGCATTGCGATT
1 ATTTCGCATTGCGATT
49315 CTCTCGTTAC
Statistics
Matches: 58, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
14 9 0.16
16 4 0.07
18 4 0.07
19 29 0.50
20 12 0.21
ACGTcount: A:0.16, C:0.20, G:0.17, T:0.47
Consensus pattern (19 bp):
ATTTCGCATTGCGATTTTC
Found at i:49349 original size:20 final size:20
Alignment explanation
Indices: 49324--49377 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
49314 TCTCTCGTTA
49324 CGATAGTCAATTCCGCATTG
1 CGATAGTCAATTCCGCATTG
* **
49344 CGATAGTCATTTCCGTGTTG
1 CGATAGTCAATTCCGCATTG
49364 CGATAGTCATATTC
1 CGATAGTCA-ATTC
49378 ATGTTGTGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 26 0.90
21 3 0.10
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.35
Consensus pattern (20 bp):
CGATAGTCAATTCCGCATTG
Found at i:49382 original size:20 final size:20
Alignment explanation
Indices: 49341--49392 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
49331 CAATTCCGCA
*
49341 TTGCGATAGTCATTTCCGTG
1 TTGCGATAGTCATTTCCATG
49361 TTGCGATAGTCATATT-CATG
1 TTGCGATAGTCAT-TTCCATG
*
49381 TTGTGATAGTCA
1 TTGCGATAGTCA
49393 AATGAATGTC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 27 0.93
21 2 0.07
ACGTcount: A:0.21, C:0.15, G:0.23, T:0.40
Consensus pattern (20 bp):
TTGCGATAGTCATTTCCATG
Found at i:49401 original size:20 final size:20
Alignment explanation
Indices: 49359--49401 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
49349 GTCATTTCCG
* **
49359 TGTTGCGATAGTCATATTCA
1 TGTTGCGATAGTCAAATGAA
*
49379 TGTTGTGATAGTCAAATGAA
1 TGTTGCGATAGTCAAATGAA
49399 TGT
1 TGT
49402 CTAATAAGTG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (20 bp):
TGTTGCGATAGTCAAATGAA
Found at i:51874 original size:24 final size:24
Alignment explanation
Indices: 51823--51874 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
51813 ATCCAAGTAT
** *
51823 TGACCAAGATCAAAGTTTGGGTAT
1 TGACCAAGATCAAAGTTTGAATAC
51847 TGACCAAGATCAAA-TTTCGAATAC
1 TGACCAAGATCAAAGTTT-GAATAC
51871 TGAC
1 TGAC
51875 TAGTACTCAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 3 0.12
24 21 0.88
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (24 bp):
TGACCAAGATCAAAGTTTGAATAC
Found at i:52745 original size:20 final size:20
Alignment explanation
Indices: 52722--52810 Score: 126
Period size: 20 Copynumber: 4.4 Consensus size: 20
52712 CAGAATCTCG
*
52722 TTGCAATTTACAG-ATTCACA
1 TTGCAATTTAC-GTATTCGCA
*
52742 TTGCGATTTACGTATTCGCA
1 TTGCAATTTACGTATTCGCA
*
52762 TTGCGATTTACGTATTCGCA
1 TTGCAATTTACGTATTCGCA
52782 TTGCAATTTACGTATTCGCA
1 TTGCAATTTACGTATTCGCA
52802 TTGCGAATT
1 TTGC-AATT
52811 AGAAAAATCG
Statistics
Matches: 64, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
19 1 0.02
20 59 0.92
21 4 0.06
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (20 bp):
TTGCAATTTACGTATTCGCA
Found at i:53825 original size:75 final size:75
Alignment explanation
Indices: 53728--53925 Score: 231
Period size: 75 Copynumber: 2.6 Consensus size: 75
53718 AATCATAAAT
* * * * *
53728 AATGTCAAATATCAAGACTCAAACAATAATATTAAGTTTATAACAGTAAAATCCATAA-ACAAA-
1 AATGTCAAATTTCAAGACTCAAACCATAATATTAAGTCTAGAACAATAAAATCCATAATA-AAAT
53791 CAACAATATTAA
65 C-ACAATATTAA
* * * *
53803 AATGTCAAATTTCAATATTCAAACCATAATATTAACTCTAGAATAATAAAATCCATAATAAAATC
1 AATGTCAAATTTCAAGACTCAAACCATAATATTAAGTCTAGAACAATAAAATCCATAATAAAATC
*
53868 ATAATATTAA
66 ACAATATTAA
* * *
53878 AGTGTTAAATCTT-AAGACTCAAACCATAATATTAAGTCTAGAAAAATA
1 AATGTCAAAT-TTCAAGACTCAAACCATAATATTAAGTCTAGAACAATA
53926 TTAAACTCAA
Statistics
Matches: 104, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
75 100 0.96
76 4 0.04
ACGTcount: A:0.52, C:0.14, G:0.06, T:0.29
Consensus pattern (75 bp):
AATGTCAAATTTCAAGACTCAAACCATAATATTAAGTCTAGAACAATAAAATCCATAATAAAATC
ACAATATTAA
Found at i:53872 original size:11 final size:12
Alignment explanation
Indices: 53845--53873 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
53835 TAACTCTAGA
53845 ATAATAAAATCC
1 ATAATAAAATCC
53857 ATAATAAAAT-C
1 ATAATAAAATCC
53868 ATAATA
1 ATAATA
53874 TTAAAGTGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 7 0.41
12 10 0.59
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.28
Consensus pattern (12 bp):
ATAATAAAATCC
Found at i:54169 original size:21 final size:21
Alignment explanation
Indices: 54144--54187 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
54134 TTCCTCATCT
54144 TCCCAAAGTTCCAATCTTTCA
1 TCCCAAAGTTCCAATCTTTCA
*
54165 TCCCAAAGTTTCAATCTTTCA
1 TCCCAAAGTTCCAATCTTTCA
54186 TC
1 TC
54188 AATGGTTTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.27, C:0.32, G:0.05, T:0.36
Consensus pattern (21 bp):
TCCCAAAGTTCCAATCTTTCA
Found at i:55055 original size:20 final size:20
Alignment explanation
Indices: 55030--55068 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
55020 GAAGTGAAGC
*
55030 TGGCATGGAGCATTGCTTGT
1 TGGCATGGAGCATAGCTTGT
55050 TGGCATGGAGCATAGCTTG
1 TGGCATGGAGCATAGCTTG
55069 CTAGAAACAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.18, C:0.15, G:0.36, T:0.31
Consensus pattern (20 bp):
TGGCATGGAGCATAGCTTGT
Found at i:62168 original size:36 final size:36
Alignment explanation
Indices: 62099--62420 Score: 291
Period size: 36 Copynumber: 9.3 Consensus size: 36
62089 AACTGTCTTG
* *
62099 AGTGAGACAAAATATGTTTTAA-AAAAATAATCTCA
1 AGTGAGATAAAATATGTTTTAAGAAAAACAATCTCA
* *
62134 AATGAGATAAAATTTGTTTTAAGAAAAACAATCTCA
1 AGTGAGATAAAATATGTTTTAAGAAAAACAATCTCA
* * * *
62170 ATTGAGATAAAATTTGTTTTAAGAAAAATAATATCA
1 AGTGAGATAAAATATGTTTTAAGAAAAACAATCTCA
* * *
62206 AGTGGGATAAAAT-T-TTAGTTTAGGAAAA-AAT-TGCA
1 AGTGAGATAAAATATGTT--TTAAGAAAAACAATCT-CA
* * *
62241 AGTGAGATAAAATCTGTTTTAAGGAAAACAATTTCA
1 AGTGAGATAAAATATGTTTTAAGAAAAACAATCTCA
*
62277 AGTGAGATAAAATATGTTTTAAGGAAAACAATCTCA
1 AGTGAGATAAAATATGTTTTAAGAAAAACAATCTCA
*
62313 AGTGAGATAAAATATGTTTTAAG------------G
1 AGTGAGATAAAATATGTTTTAAGAAAAACAATCTCA
* * * * *
62337 AGTGTGATAAAATCTGTTTTAAGGAAAATAATATCA
1 AGTGAGATAAAATATGTTTTAAGAAAAACAATCTCA
* *
62373 AGTGAGATAGAATATGTTTTAAGAAAAACAATATCA
1 AGTGAGATAAAATATGTTTTAAGAAAAACAATCTCA
62409 AGTGAGATAAAA
1 AGTGAGATAAAA
62421 CATTTTGTGA
Statistics
Matches: 242, Mismatches: 25, Indels: 39
0.79 0.08 0.13
Matches are distributed among these distances:
24 21 0.09
34 3 0.01
35 46 0.19
36 169 0.70
37 3 0.01
ACGTcount: A:0.48, C:0.06, G:0.16, T:0.30
Consensus pattern (36 bp):
AGTGAGATAAAATATGTTTTAAGAAAAACAATCTCA
Found at i:62182 original size:71 final size:72
Alignment explanation
Indices: 62099--62420 Score: 327
Period size: 71 Copynumber: 4.7 Consensus size: 72
62089 AACTGTCTTG
* * * *
62099 AGTGAGACAAAATATGTTTTAA-AAAAATAATCTCAAATGAGATAAAATTTGTTTTAAGAAAAAC
1 AGTGAGATAAAATATGTTTTAAGAAAAATAATATCAAGTGAGATAAAATTTGTTTTAAGGAAAAC
62163 AATCTCA
66 AATCTCA
* * *
62170 ATTGAGATAAAATTTGTTTTAAGAAAAATAATATCAAGTGGGATAAAATTT-TAGTTT-AGGAAA
1 AGTGAGATAAAATATGTTTTAAGAAAAATAATATCAAGTGAGATAAAATTTGT--TTTAAGGAAA
62233 A-AAT-TGCA
64 ACAATCT-CA
* * * * *
62241 AGTGAGATAAAATCTGTTTTAAGGAAAACAATTTCAAGTGAGATAAAATATGTTTTAAGGAAAAC
1 AGTGAGATAAAATATGTTTTAAGAAAAATAATATCAAGTGAGATAAAATTTGTTTTAAGGAAAAC
62306 AATCTCA
66 AATCTCA
* * * *
62313 AGTGAGATAAAATATGTTTTAAG------------GAGTGTGATAAAATCTGTTTTAAGGAAAAT
1 AGTGAGATAAAATATGTTTTAAGAAAAATAATATCAAGTGAGATAAAATTTGTTTTAAGGAAAAC
*
62366 AATATCA
66 AATCTCA
* *
62373 AGTGAGATAGAATATGTTTTAAGAAAAACAATATCAAGTGAGATAAAA
1 AGTGAGATAAAATATGTTTTAAGAAAAATAATATCAAGTGAGATAAAA
62421 CATTTTGTGA
Statistics
Matches: 208, Mismatches: 23, Indels: 39
0.77 0.09 0.14
Matches are distributed among these distances:
60 54 0.26
70 4 0.02
71 76 0.37
72 70 0.34
73 4 0.02
ACGTcount: A:0.48, C:0.06, G:0.16, T:0.30
Consensus pattern (72 bp):
AGTGAGATAAAATATGTTTTAAGAAAAATAATATCAAGTGAGATAAAATTTGTTTTAAGGAAAAC
AATCTCA
Found at i:62345 original size:24 final size:24
Alignment explanation
Indices: 62313--62361 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
62303 AACAATCTCA
62313 AGTGAGATAAAATATGTTTTAAGG
1 AGTGAGATAAAATATGTTTTAAGG
* *
62337 AGTGTGATAAAATCTGTTTTAAGG
1 AGTGAGATAAAATATGTTTTAAGG
62361 A
1 A
62362 AAATAATATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.39, C:0.02, G:0.24, T:0.35
Consensus pattern (24 bp):
AGTGAGATAAAATATGTTTTAAGG
Found at i:62356 original size:60 final size:60
Alignment explanation
Indices: 62277--62395 Score: 193
Period size: 60 Copynumber: 2.0 Consensus size: 60
62267 AACAATTTCA
*
62277 AGTGAGATAAAATATGTTTTAAGGAAAACAATCTCAAGTGAGATAAAATATGTTTTAAGG
1 AGTGAGATAAAATATGTTTTAAGGAAAACAATATCAAGTGAGATAAAATATGTTTTAAGG
* * * *
62337 AGTGTGATAAAATCTGTTTTAAGGAAAATAATATCAAGTGAGATAGAATATGTTTTAAG
1 AGTGAGATAAAATATGTTTTAAGGAAAACAATATCAAGTGAGATAAAATATGTTTTAAG
62396 AAAAACAATA
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
60 54 1.00
ACGTcount: A:0.44, C:0.04, G:0.20, T:0.32
Consensus pattern (60 bp):
AGTGAGATAAAATATGTTTTAAGGAAAACAATATCAAGTGAGATAAAATATGTTTTAAGG
Found at i:62410 original size:96 final size:96
Alignment explanation
Indices: 62241--62420 Score: 306
Period size: 96 Copynumber: 1.9 Consensus size: 96
62231 AAAAATTGCA
* *
62241 AGTGAGATAAAATCTGTTTTAAGGAAAACAATTTCAAGTGAGATAAAATATGTTTTAAGGAAAAC
1 AGTGAGATAAAATCTGTTTTAAGGAAAACAATATCAAGTGAGATAAAATATGTTTTAAGAAAAAC
*
62306 AATCTCAAGTGAGATAAAATATGTTTTAAGG
66 AATATCAAGTGAGATAAAATATGTTTTAAGG
* * *
62337 AGTGTGATAAAATCTGTTTTAAGGAAAATAATATCAAGTGAGATAGAATATGTTTTAAGAAAAAC
1 AGTGAGATAAAATCTGTTTTAAGGAAAACAATATCAAGTGAGATAAAATATGTTTTAAGAAAAAC
62402 AATATCAAGTGAGATAAAA
66 AATATCAAGTGAGATAAAA
62421 CATTTTGTGA
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
96 78 1.00
ACGTcount: A:0.47, C:0.06, G:0.18, T:0.29
Consensus pattern (96 bp):
AGTGAGATAAAATCTGTTTTAAGGAAAACAATATCAAGTGAGATAAAATATGTTTTAAGAAAAAC
AATATCAAGTGAGATAAAATATGTTTTAAGG
Found at i:62675 original size:22 final size:22
Alignment explanation
Indices: 62650--62703 Score: 99
Period size: 22 Copynumber: 2.5 Consensus size: 22
62640 CTCAAGAAAC
62650 CTTTGAAAATCAAACTTGGCTT
1 CTTTGAAAATCAAACTTGGCTT
62672 CTTTGAAAATCAAACTTGGCTT
1 CTTTGAAAATCAAACTTGGCTT
*
62694 CTTTAAAAAT
1 CTTTGAAAAT
62704 TCATTTGAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37
Consensus pattern (22 bp):
CTTTGAAAATCAAACTTGGCTT
Found at i:62804 original size:73 final size:73
Alignment explanation
Indices: 62672--62866 Score: 311
Period size: 73 Copynumber: 2.7 Consensus size: 73
62662 AACTTGGCTT
* *
62672 CTTTGAAAATCAAACTTGGCTTCTTTAAAAATTCATTTGAAAACATCATATCGGCCGATAATCAT
1 CTTTGAAAATCAAACTTGGCTTCTTTAAAAATTCATTTAAAAACATCATATCAGCCGATAATCAT
*
62737 TAAGAAAC
66 CAAGAAAC
* * * *
62745 CTTTGAAAATCAAACTTGGCTGCTTTAAAAATTCATTTAAAAATATCGTATCAGTCGATAATCAT
1 CTTTGAAAATCAAACTTGGCTTCTTTAAAAATTCATTTAAAAACATCATATCAGCCGATAATCAT
*
62810 CAAGAAGC
66 CAAGAAAC
62818 CTTTGAAAATCAAACTTGGCTTCTTTAAAAATTCATTT-AAAACATCATA
1 CTTTGAAAATCAAACTTGGCTTCTTTAAAAATTCATTTAAAAACATCATA
62867 CCAGTCGGGT
Statistics
Matches: 111, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
72 9 0.08
73 102 0.92
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (73 bp):
CTTTGAAAATCAAACTTGGCTTCTTTAAAAATTCATTTAAAAACATCATATCAGCCGATAATCAT
CAAGAAAC
Found at i:66458 original size:16 final size:16
Alignment explanation
Indices: 66437--66468 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
66427 TGGCTTAACC
*
66437 CTAGAGGCAGTATAAT
1 CTAGAGGCAGCATAAT
66453 CTAGAGGCAGCATAAT
1 CTAGAGGCAGCATAAT
66469 GATTGATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.22
Consensus pattern (16 bp):
CTAGAGGCAGCATAAT
Found at i:68676 original size:2 final size:2
Alignment explanation
Indices: 68665--68695 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
68655 TGACTAAATC
68665 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
68696 GTCTAATAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:70903 original size:18 final size:20
Alignment explanation
Indices: 70872--70909 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
70862 GTAATGCTCT
70872 AATATATTTATAAT-GTTTA
1 AATATATTTATAATAGTTTA
*
70891 AATA-ATTTGTAATAGTTTA
1 AATATATTTATAATAGTTTA
70910 TATGTATGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (20 bp):
AATATATTTATAATAGTTTA
Found at i:73702 original size:16 final size:17
Alignment explanation
Indices: 73681--73722 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
73671 GAAAACGTAT
73681 AATATATAATTTT-AAA
1 AATATATAATTTTGAAA
73697 AATATAT--TTTTGAAA
1 AATATATAATTTTGAAA
73712 ACATATATAAT
1 A-ATATATAAT
73723 ATATAGTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
14 4 0.18
15 4 0.18
16 13 0.59
18 1 0.05
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (17 bp):
AATATATAATTTTGAAA
Found at i:73710 original size:37 final size:37
Alignment explanation
Indices: 73666--73782 Score: 121
Period size: 37 Copynumber: 3.1 Consensus size: 37
73656 TGAAAACACT
*
73666 TTTTTGAAAACGTATAATATATAATTTTAAAAATATA
1 TTTTTGAAAACATATAATATATAATTTTAAAAATATA
* **
73703 TTTTTGAAAACATATATAATATATAGTTTTTAAAACCA-A
1 TTTTTGAAAAC--ATATAATATATA-ATTTTAAAAATATA
* * * *
73742 TTTTGGAAAACATATACTATATAGTTTTTAAAATAT-
1 TTTTTGAAAACATATAATATATAATTTTAAAAATATA
73778 TTTTT
1 TTTTT
73783 CAAGACGTAT
Statistics
Matches: 65, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
36 12 0.18
37 22 0.34
39 22 0.34
40 9 0.14
ACGTcount: A:0.44, C:0.05, G:0.06, T:0.45
Consensus pattern (37 bp):
TTTTTGAAAACATATAATATATAATTTTAAAAATATA
Found at i:73918 original size:5 final size:5
Alignment explanation
Indices: 73903--73958 Score: 53
Period size: 5 Copynumber: 11.0 Consensus size: 5
73893 AGTATATACA
* *
73903 TATTAT TATTT TATTT TATTT TATTT T-CTG T-TTT TATTTT TATTTT
1 TATT-T TATTT TATTT TATTT TATTT TATTT TATTT TA-TTT TA-TTT
73949 TATTT TATTT
1 TATTT TATTT
73959 ACTTATTTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
4 4 0.09
5 25 0.57
6 15 0.34
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.79
Consensus pattern (5 bp):
TATTT
Found at i:73937 original size:13 final size:12
Alignment explanation
Indices: 73911--73958 Score: 57
Period size: 11 Copynumber: 4.2 Consensus size: 12
73901 CATATTATTA
73911 TTTTA-TTTTA-
1 TTTTATTTTTAT
*
73921 TTTTATTTTCTGT
1 TTTTATTTT-TAT
73934 TTTTATTTTTAT
1 TTTTATTTTTAT
73946 TTTTA-TTTTAT
1 TTTTATTTTTAT
73957 TT
1 TT
73959 ACTTATTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
10 5 0.15
11 11 0.33
12 8 0.24
13 9 0.27
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.81
Consensus pattern (12 bp):
TTTTATTTTTAT
Found at i:73946 original size:29 final size:28
Alignment explanation
Indices: 73911--73975 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 28
73901 CATATTATTA
* *
73911 TTTTATTTTATTTTATTTTCTGTTTTTAT
1 TTTTATTTTATTTTATTTACT-TATTTAT
73940 TTTTATTTTTATTTTATTTACTTATTTAT
1 TTTTA-TTTTATTTTATTTACTTATTTAT
*
73969 TCTTATT
1 TTTTATT
73976 ATCATTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 2 0.06
29 15 0.47
30 15 0.47
ACGTcount: A:0.17, C:0.05, G:0.02, T:0.77
Consensus pattern (28 bp):
TTTTATTTTATTTTATTTACTTATTTAT
Found at i:73975 original size:35 final size:35
Alignment explanation
Indices: 73903--73984 Score: 89
Period size: 35 Copynumber: 2.4 Consensus size: 35
73893 AGTATATACA
* *
73903 TATTATTA-TTTTATTTTATTTTATTTTCTGTTTT
1 TATTATTATTTTTATTTTATTTTATTTTCTATTCT
*
73937 TATTTTTATTTTTATTTTA-TTTACTTATT-TATTCT
1 TATTATTATTTTTATTTTATTTTA-TT-TTCTATTCT
*
73972 TATTATCATTTTT
1 TATTATTATTTTT
73985 TGGGTTCAAG
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
34 11 0.28
35 27 0.68
36 2 0.05
ACGTcount: A:0.20, C:0.05, G:0.01, T:0.74
Consensus pattern (35 bp):
TATTATTATTTTTATTTTATTTTATTTTCTATTCT
Found at i:73983 original size:29 final size:28
Alignment explanation
Indices: 73908--73975 Score: 84
Period size: 30 Copynumber: 2.4 Consensus size: 28
73898 ATACATATTA
* *
73908 TTATTTTATTTTATTTTATTTTCTGTTT
1 TTATTTTATTTTATTTTATTTACTGTAT
73936 TTATTTTTATTTTTATTTTATTTACT-TAT
1 TTA-TTTTA-TTTTATTTTATTTACTGTAT
73965 TTATTCTTATT
1 TTATT-TTATT
73976 ATCATTTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
28 7 0.20
29 13 0.37
30 15 0.43
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.76
Consensus pattern (28 bp):
TTATTTTATTTTATTTTATTTACTGTAT
Found at i:74430 original size:21 final size:21
Alignment explanation
Indices: 74404--74451 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
74394 GACTCAAAAC
*
74404 AGCCAAAC-TCGGGGTTATTAA
1 AGCCAAACGT-GGGGCTATTAA
74425 AGCC-AACGGTGGGGCTATTAA
1 AGCCAAAC-GTGGGGCTATTAA
74446 AGCCAA
1 AGCCAA
74452 CGGTGAGGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
20 3 0.13
21 18 0.78
22 2 0.09
ACGTcount: A:0.33, C:0.21, G:0.27, T:0.19
Consensus pattern (21 bp):
AGCCAAACGTGGGGCTATTAA
Found at i:74452 original size:21 final size:21
Alignment explanation
Indices: 74414--74462 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
74404 AGCCAAACTC
*
74414 GGGGTTATTAAAGCCAACGGT
1 GGGGCTATTAAAGCCAACGGT
74435 GGGGCTATTAAAGCCAACGGT
1 GGGGCTATTAAAGCCAACGGT
*
74456 GAGGCTA
1 GGGGCTA
74463 AGGGAAGAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.29, C:0.16, G:0.35, T:0.20
Consensus pattern (21 bp):
GGGGCTATTAAAGCCAACGGT
Found at i:74962 original size:25 final size:25
Alignment explanation
Indices: 74926--74973 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
74916 GAGTTGAGAG
*
74926 AGTTTGGGGAG-ATGATTTTTTTGA
1 AGTTAGGGGAGAATGATTTTTTTGA
74950 AGTTAGGGTGAGAATGATTTTTTT
1 AGTTAGGG-GAGAATGATTTTTTT
74974 AGGTGTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.33
25 3 0.14
26 11 0.52
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.46
Consensus pattern (25 bp):
AGTTAGGGGAGAATGATTTTTTTGA
Found at i:96411 original size:87 final size:85
Alignment explanation
Indices: 96247--96413 Score: 194
Period size: 87 Copynumber: 1.9 Consensus size: 85
96237 TAGAAAACGA
* * *
96247 TTTTTAAAAACACATAATATATACTTTTAAAAACAATCGGTTTTGAATATATATATATATATATA
1 TTTTTAAAAACACATAACATATACTTTTAAAAACAAT--GTTTTGAAAACATATATATATATATA
*
96312 TATAATATGGTTTTGAAACACT
64 TATAAAATGGTTTTGAAACACT
* *
96334 TTTTTAAAAACATATAACATA-AGTTTTAAAAACATAT-TTTTGAAAACATATATAATATATAGT
1 TTTTTAAAAACACATAACATATACTTTTAAAAACA-ATGTTTTGAAAACATATAT-ATATATA-T
* *
96397 TTTTAAAATCGGTTTTG
63 ATATAAAAT-GGTTTTG
96414 GAAAACATAT
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
84 14 0.21
85 7 0.10
86 19 0.28
87 28 0.41
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.42
Consensus pattern (85 bp):
TTTTTAAAAACACATAACATATACTTTTAAAAACAATGTTTTGAAAACATATATATATATATATA
TAAAATGGTTTTGAAACACT
Found at i:96450 original size:37 final size:36
Alignment explanation
Indices: 96333--96470 Score: 143
Period size: 37 Copynumber: 3.7 Consensus size: 36
96323 TTTGAAACAC
* * * *
96333 TTTTTTAAAAACATATAACATA-AGTTTTAAAAACA
1 TTTTTTGAAAACATATAATATATAGTTTTTAAAATA
*
96368 TATTTTTGAAAACATATATAATATATAGTTTTTAAAATCG
1 T-TTTTTGAAAAC--ATATAATATATAGTTTTTAAAAT-A
* *
96408 GTTTTGGAAAACATATAATATATAGTTTTTAAAATA
1 TTTTTTGAAAACATATAATATATAGTTTTTAAAATA
*
96444 TTTTTTGAAAACGTATATATAATATAG
1 TTTTTTGAAAACATATA-AT-ATATAG
96471 CATGTGAAAA
Statistics
Matches: 85, Mismatches: 11, Indels: 11
0.79 0.10 0.10
Matches are distributed among these distances:
35 1 0.01
36 24 0.28
37 25 0.29
38 15 0.18
39 20 0.24
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.42
Consensus pattern (36 bp):
TTTTTTGAAAACATATAATATATAGTTTTTAAAATA
Found at i:110420 original size:157 final size:154
Alignment explanation
Indices: 110132--110425 Score: 491
Period size: 157 Copynumber: 1.9 Consensus size: 154
110122 TTCTTTGGTG
**
110132 GAATATAAAGTCGAGTAAGTGACCAGGGAAATAATAGTACACGGAAAACAAATCTGCACCTCTTT
1 GAATATAAAGTCGAGTAAGTGACCAGGGAAATAATAGTACACAAAAAACAAATCTGCACCTCTTT
110197 ACTTTCGGTATGTACTAAAATTTGAGGATGAATTTTCTTAAGGGGGAGAGTTGTAATACCCCAAT
66 ACTTTCGGTATGTACTAAAATTTGAGGATGAATTTTCTTAAGGGGGAGAGTTGTAATACCCCAAT
110262 TTTTGGTCAAAGTTTTGAAAGTGT
131 TTTTGGTCAAAGTTTTGAAAGTGT
* * * *
110286 GAATCATAAAGTCGAGTAAGTGACCAGGGAAAGTAGTAATTACACAAAAAATATATCTGCACCTC
1 GAAT-ATAAAGTCGAGTAAGTGACCAGGGAAA-TAAT-AGTACACAAAAAACAAATCTGCACCTC
110351 TTTACTTTCGGTATGTACT-AAATTTGAGGATGAATTTTTCTTAAGGGGGAGAGTTGTAATACCC
63 TTTACTTTCGGTATGTACTAAAATTTGAGGATGAA-TTTTCTTAAGGGGGAGAGTTGTAATACCC
110415 CAATTTTTGGT
127 CAATTTTTGGT
110426 TTGTGACTAA
Statistics
Matches: 130, Mismatches: 6, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
154 4 0.03
155 27 0.21
156 18 0.14
157 81 0.62
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.31
Consensus pattern (154 bp):
GAATATAAAGTCGAGTAAGTGACCAGGGAAATAATAGTACACAAAAAACAAATCTGCACCTCTTT
ACTTTCGGTATGTACTAAAATTTGAGGATGAATTTTCTTAAGGGGGAGAGTTGTAATACCCCAAT
TTTTGGTCAAAGTTTTGAAAGTGT
Found at i:112135 original size:13 final size:13
Alignment explanation
Indices: 112117--112142 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
112107 TCTAATTTCG
112117 ATAGTAAGGCATA
1 ATAGTAAGGCATA
112130 ATAGTAAGGCATA
1 ATAGTAAGGCATA
112143 CCAGGTGAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.23, T:0.23
Consensus pattern (13 bp):
ATAGTAAGGCATA
Found at i:119053 original size:14 final size:15
Alignment explanation
Indices: 119034--119062 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
119024 AACTATACAG
119034 ATCAAGAATC-AAGA
1 ATCAAGAATCGAAGA
119048 ATCAAGAATCGAAGA
1 ATCAAGAATCGAAGA
119063 TCGGTTTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.55, C:0.14, G:0.17, T:0.14
Consensus pattern (15 bp):
ATCAAGAATCGAAGA
Found at i:121424 original size:26 final size:26
Alignment explanation
Indices: 121385--121435 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
121375 TAAGCTTAAT
*
121385 ATATATATTAAAAATTATATAATATA
1 ATATATATTAAAAATCATATAATATA
* * *
121411 ATATATTTTTAAAATCATGTAATAT
1 ATATATATTAAAAATCATATAATAT
121436 GTTTTTAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (26 bp):
ATATATATTAAAAATCATATAATATA
Found at i:121537 original size:24 final size:24
Alignment explanation
Indices: 121456--121537 Score: 73
Period size: 24 Copynumber: 3.5 Consensus size: 24
121446 AAGTATACTA
* *
121456 TATATATTATATGTTTTC-GAAAC
1 TATATATTATATATTTTCAAAAAC
** *
121479 TATATAAAATATGTATTT-AAAAAC
1 TATATATTATATAT-TTTCAAAAAC
*
121503 --TATACTATATATTTTCAAAAAC
1 TATATATTATATATTTTCAAAAAC
121525 TATATATTATATA
1 TATATATTATATA
121538 CATTTTTTGA
Statistics
Matches: 47, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
21 3 0.06
22 15 0.32
23 12 0.26
24 17 0.36
ACGTcount: A:0.45, C:0.07, G:0.04, T:0.44
Consensus pattern (24 bp):
TATATATTATATATTTTCAAAAAC
Found at i:124737 original size:13 final size:13
Alignment explanation
Indices: 124719--124744 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
124709 TTAGGACATA
124719 ATTAAAAATTAAT
1 ATTAAAAATTAAT
124732 ATTAAAAATTAAT
1 ATTAAAAATTAAT
124745 CTCAGTGATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
ATTAAAAATTAAT
Found at i:125611 original size:14 final size:15
Alignment explanation
Indices: 125592--125627 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
125582 TGGTAAAATA
125592 TTAATATAATTTA-T
1 TTAATATAATTTATT
125606 TTAATATAATTTATT
1 TTAATATAATTTATT
125621 TTAATAT
1 TTAATAT
125628 TATTATTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TTAATATAATTTATT
Found at i:125633 original size:14 final size:14
Alignment explanation
Indices: 125592--125634 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
125582 TGGTAAAATA
125592 TTAATATAATT-TAT
1 TTAATATAATTAT-T
125606 TTAATATAATTTATT
1 TTAATATAA-TTATT
*
125621 TTAATATTATTATT
1 TTAATATAATTATT
125635 AAAATAATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
14 14 0.54
15 11 0.42
16 1 0.04
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
TTAATATAATTATT
Found at i:125662 original size:23 final size:24
Alignment explanation
Indices: 125629--125683 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 24
125619 TTTTAATATT
*
125629 ATTATTA-AAAT-AATATATCTATA
1 ATTATTATAAATAAAAATAT-TATA
125652 ATT-TTATAAATAAAAATATTATA
1 ATTATTATAAATAAAAATATTATA
125675 ATTATTATA
1 ATTATTATA
125684 TATTATTAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
22 3 0.11
23 14 0.50
24 11 0.39
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (24 bp):
ATTATTATAAATAAAAATATTATA
Found at i:125728 original size:17 final size:17
Alignment explanation
Indices: 125706--125763 Score: 53
Period size: 20 Copynumber: 3.1 Consensus size: 17
125696 TATTAATTAT
125706 TTATTAAAATAAGAATA
1 TTATTAAAATAAGAATA
*
125723 TTATTAAAGTATTAAAAATTA
1 TTATTAAA--A-TAAGAA-TA
125744 TAATATTAAAATAAGAATA
1 T--TATTAAAATAAGAATA
125763 T
1 T
125764 CATGTTATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
17 8 0.24
19 4 0.12
20 10 0.30
21 4 0.12
23 7 0.21
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (17 bp):
TTATTAAAATAAGAATA
Found at i:125878 original size:29 final size:29
Alignment explanation
Indices: 125846--125903 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
125836 AATATTAATT
*
125846 TATTATATATTATTAA-AATA-AATTTATAA
1 TATTACATATTA-TAATAATATAA-TTATAA
125875 TATTACATATTATAATAATATAATTATAA
1 TATTACATATTATAATAATATAATTATAA
125904 CAATAAATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 3 0.12
29 21 0.81
30 2 0.08
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (29 bp):
TATTACATATTATAATAATATAATTATAA
Found at i:125928 original size:49 final size:48
Alignment explanation
Indices: 125861--125962 Score: 120
Period size: 49 Copynumber: 2.1 Consensus size: 48
125851 TATATTATTA
*
125861 AAATA-AATTTATAATATTACATATTAT-AAT-AATATAATTATAACAAT
1 AAATATAATTTATAATATTA-AAATTATCAATAAATATAATT-TAACAAT
* *
125908 AAATATAATATTATATTATTAAAATTATCAATAAATATAATTTAATAAT
1 AAATATAAT-TTATAATATTAAAATTATCAATAAATATAATTTAACAAT
*
125957 TAATAT
1 AAATAT
125963 TTTTTATTAA
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
47 5 0.11
48 9 0.19
49 24 0.51
50 9 0.19
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (48 bp):
AAATATAATTTATAATATTAAAATTATCAATAAATATAATTTAACAAT
Found at i:125945 original size:32 final size:33
Alignment explanation
Indices: 125881--125961 Score: 94
Period size: 34 Copynumber: 2.4 Consensus size: 33
125871 ATAATATTAC
*
125881 ATATTATAATAATATAATTATAACAATAAATATA
1 ATATTATAATAATAAAATTAT-ACAATAAATATA
* *
125915 ATATTATATTATTAAAATTAT-CAATAAATATA
1 ATATTATAATAATAAAATTATACAATAAATATA
125947 AT-TTAATAATTAATA
1 ATATT-ATAA-TAATA
125962 TTTTTTATTA
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
31 2 0.05
32 16 0.40
33 4 0.10
34 18 0.45
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (33 bp):
ATATTATAATAATAAAATTATACAATAAATATA
Found at i:127419 original size:20 final size:20
Alignment explanation
Indices: 127394--127444 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
127384 AAGTTGTATA
127394 ATTTTTTTTATTATAATTAT
1 ATTTTTTTTATTATAATTAT
**
127414 ATTTTTATTT-TTATTTTTAT
1 ATTTTT-TTTATTATAATTAT
*
127434 ATTTTTGTTAT
1 ATTTTTTTTAT
127445 AGTTTAATTG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.75
Consensus pattern (20 bp):
ATTTTTTTTATTATAATTAT
Found at i:130084 original size:107 final size:107
Alignment explanation
Indices: 129898--130113 Score: 423
Period size: 107 Copynumber: 2.0 Consensus size: 107
129888 AGTGTTTGTG
129898 AAGAAAATTTAGGAATGGAAAGTCGTTGCAAAAAATAATGTCATATTCACTACAGTAAATTTAGT
1 AAGAAAATTTAGGAATGGAAAGTCGTTGCAAAAAATAATGTCATATTCACTACAGTAAATTTAGT
*
129963 ATTTAGGTATTTTTTAGCGGTGTTTACTACACAAACTTCATT
66 ATTTAGGTATTTTTTAGCGGTGTTTACCACACAAACTTCATT
130005 AAGAAAATTTAGGAATGGAAAGTCGTTGCAAAAAATAATGTCATATTCACTACAGTAAATTTAGT
1 AAGAAAATTTAGGAATGGAAAGTCGTTGCAAAAAATAATGTCATATTCACTACAGTAAATTTAGT
130070 ATTTAGGTATTTTTTAGCGGTGTTTACCACACAAACTTCATT
66 ATTTAGGTATTTTTTAGCGGTGTTTACCACACAAACTTCATT
130112 AA
1 AA
130114 CAACATCATT
Statistics
Matches: 108, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
107 108 1.00
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.35
Consensus pattern (107 bp):
AAGAAAATTTAGGAATGGAAAGTCGTTGCAAAAAATAATGTCATATTCACTACAGTAAATTTAGT
ATTTAGGTATTTTTTAGCGGTGTTTACCACACAAACTTCATT
Found at i:131161 original size:17 final size:17
Alignment explanation
Indices: 131118--131169 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 17
131108 AATACAGTAG
*
131118 AAACTCTTTAAATTAAT
1 AAACTCTCTAAATTAAT
**
131135 --ACTCGGTAAATTAAT
1 AAACTCTCTAAATTAAT
*
131150 AAACTCTCTAAAATAAT
1 AAACTCTCTAAATTAAT
131167 AAA
1 AAA
131170 TTTGTCCGGT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
15 13 0.46
17 15 0.54
ACGTcount: A:0.50, C:0.13, G:0.04, T:0.33
Consensus pattern (17 bp):
AAACTCTCTAAATTAAT
Found at i:134349 original size:2 final size:2
Alignment explanation
Indices: 134342--134370 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
134332 CCATTTCAAA
134342 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
134371 AAGAACTTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:134516 original size:28 final size:28
Alignment explanation
Indices: 134480--134567 Score: 133
Period size: 28 Copynumber: 3.1 Consensus size: 28
134470 TTATTCTAGT
*
134480 TGTTAAACTACATTACATTTTACTTGAA
1 TGTTGAACTACATTACATTTTACTTGAA
*
134508 TGTTGAACTACATTATATTTCT-CTTGAA
1 TGTTGAACTACATTACATTT-TACTTGAA
*
134536 TGTTGAACTACATTACATTTCACTTGAA
1 TGTTGAACTACATTACATTTTACTTGAA
134564 TGTT
1 TGTT
134568 TGTGACTATG
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
28 53 0.98
29 1 0.02
ACGTcount: A:0.31, C:0.15, G:0.10, T:0.44
Consensus pattern (28 bp):
TGTTGAACTACATTACATTTTACTTGAA
Found at i:135817 original size:15 final size:15
Alignment explanation
Indices: 135744--135820 Score: 68
Period size: 15 Copynumber: 5.1 Consensus size: 15
135734 TGGACCATAA
*
135744 TTATGTAATTGTATT
1 TTATGTTATTGTATT
* * *
135759 TTCTGATT-TTGAAAT
1 TTATG-TTATTGTATT
*
135774 TTATGTTATT-TAAAT
1 TTATGTTATTGT-ATT
*
135789 TTATGGTATTGTATT
1 TTATGTTATTGTATT
135804 TTATGTTATTGTATT
1 TTATGTTATTGTATT
135819 TT
1 TT
135821 TTGGACCATT
Statistics
Matches: 49, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
14 2 0.04
15 45 0.92
16 2 0.04
ACGTcount: A:0.25, C:0.01, G:0.13, T:0.61
Consensus pattern (15 bp):
TTATGTTATTGTATT
Done.