Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004798.1 Hibiscus syriacus cultivar Beakdansim tig00010811_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85723
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:7461 original size:79 final size:79
Alignment explanation
Indices: 7330--7488 Score: 293
Period size: 79 Copynumber: 2.0 Consensus size: 79
7320 TCTTGATAGG
7330 TAAGTTTTAAGTTAGCTTGAGTTGAGGGTTTGAGAAAAACGGGAGGGTGACCCTTGTAAGCTTTT
1 TAAGTTTTAAGTTAGCTTGAGTTGAGGGTTTGAGAAAAACGGGAGGGTGACCCTTGTAAGCTTTT
7395 TGTTGCATCTTGAT
66 TGTTGCATCTTGAT
7409 TAAGTTTTAAGTTAGCTTGAGTTGAGGGTTTGA-ACAAAACGGGAGGGTGACCCTTGTAAGCTTT
1 TAAGTTTTAAGTTAGCTTGAGTTGAGGGTTTGAGA-AAAACGGGAGGGTGACCCTTGTAAGCTTT
*
7473 TTGTTGTATCTTGAT
65 TTGTTGCATCTTGAT
7488 T
1 T
7489 CTTTATAATA
Statistics
Matches: 78, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
78 1 0.01
79 77 0.99
ACGTcount: A:0.24, C:0.10, G:0.28, T:0.38
Consensus pattern (79 bp):
TAAGTTTTAAGTTAGCTTGAGTTGAGGGTTTGAGAAAAACGGGAGGGTGACCCTTGTAAGCTTTT
TGTTGCATCTTGAT
Found at i:8206 original size:56 final size:55
Alignment explanation
Indices: 8140--8313 Score: 224
Period size: 56 Copynumber: 3.1 Consensus size: 55
8130 TGAAAAAAAG
* * *
8140 TATATCTATCAATTGTTGTCATTAATAAGCATAAAAATAGAGTTCCCGAAATCGAA
1 TATATCTATCAGTTGTTGTCATTAA-AAGCATAAAAATAGGGATCCCGAAATCGAA
* *
8196 TATATCTATCAGTTGTTGTCATTAAGAAGCATAAAAATAGGGGTCCCGAAATCGAG
1 TATATCTATCAGTTGTTGTCATTAA-AAGCATAAAAATAGGGATCCCGAAATCGAA
* * ** * *
8252 TATATTTATTAGTTGTTACCATTAAAATCAT-AAAATAGGGATCCCGAAATCAAA
1 TATATCTATCAGTTGTTGTCATTAAAAGCATAAAAATAGGGATCCCGAAATCGAA
8306 TATATCTA
1 TATATCTA
8314 GAAAATAATG
Statistics
Matches: 104, Mismatches: 14, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
54 27 0.26
55 5 0.05
56 72 0.69
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.32
Consensus pattern (55 bp):
TATATCTATCAGTTGTTGTCATTAAAAGCATAAAAATAGGGATCCCGAAATCGAA
Found at i:12647 original size:59 final size:55
Alignment explanation
Indices: 12582--12745 Score: 159
Period size: 59 Copynumber: 2.9 Consensus size: 55
12572 GGCATTTATT
* * * *
12582 AAAAAATATTTTAGGCACCTTTATGAAAAAGTGCTATACTTTAGGTACCTACTTTGACC
1 AAAAAATATTTTAGGTA-CTTGATGAAAAAGTGGTATACTTTAGGTACCT-C--CGACC
** * * *
12641 AAAAAATACCTTAGATATCTAGATGAAAAAGTGGTATACTTTAAGTA-CTCCGACC
1 AAAAAATATTTTAGGTA-CTTGATGAAAAAGTGGTATACTTTAGGTACCTCCGACC
*
12696 AAAAAAAATCTTTAGGTACTTGGATGAAAAAGATGGTATACTTTAGGTAC
1 AAAAAATAT-TTTAGGTACTT-GATGAAAAAG-TGGTATACTTTAGGTAC
12746 TTATTTTTTA
Statistics
Matches: 85, Mismatches: 16, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
55 13 0.15
56 16 0.19
57 16 0.19
58 2 0.02
59 38 0.45
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.30
Consensus pattern (55 bp):
AAAAAATATTTTAGGTACTTGATGAAAAAGTGGTATACTTTAGGTACCTCCGACC
Found at i:14973 original size:21 final size:20
Alignment explanation
Indices: 14948--14996 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
14938 TTAATATTTA
* *
14948 ATCCAATATCTATTTAAAGTT
1 ATCCAATATCCAATTAAA-TT
14969 ATCCAA-ATCCAATTAAATT
1 ATCCAATATCCAATTAAATT
*
14988 ATCTAATAT
1 ATCCAATAT
14997 AAGGTGAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 7 0.29
20 11 0.46
21 6 0.25
ACGTcount: A:0.43, C:0.16, G:0.02, T:0.39
Consensus pattern (20 bp):
ATCCAATATCCAATTAAATT
Found at i:23389 original size:28 final size:28
Alignment explanation
Indices: 23352--23408 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
23342 AGAAGATCAA
23352 CATGATAACAAATAAGTATCATATTGAT
1 CATGATAACAAATAAGTATCATATTGAT
23380 CATGATAACAAATAAGTATCATATTGAT
1 CATGATAACAAATAAGTATCATATTGAT
23408 C
1 C
23409 CGTCGTGACG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.46, C:0.12, G:0.11, T:0.32
Consensus pattern (28 bp):
CATGATAACAAATAAGTATCATATTGAT
Found at i:27698 original size:22 final size:22
Alignment explanation
Indices: 27673--27715 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
27663 GGTGTCTACC
27673 CTGAAATTTTATTATATCTATT
1 CTGAAATTTTATTATATCTATT
27695 CTGAAATTTTATTATATCTAT
1 CTGAAATTTTATTATATCTAT
27716 ATAAATATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.09, G:0.05, T:0.53
Consensus pattern (22 bp):
CTGAAATTTTATTATATCTATT
Found at i:30134 original size:32 final size:32
Alignment explanation
Indices: 30093--30159 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
30083 AACAGGGTTA
30093 TTATACCTTGGGAAATTTTAAGTTATGAGTCC
1 TTATACCTTGGGAAATTTTAAGTTATGAGTCC
30125 TTATACCTTGGGAAATTTTAAGTTATGAGTCC
1 TTATACCTTGGGAAATTTTAAGTTATGAGTCC
30157 TTA
1 TTA
30160 GTCACCTATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.28, C:0.12, G:0.18, T:0.42
Consensus pattern (32 bp):
TTATACCTTGGGAAATTTTAAGTTATGAGTCC
Found at i:33260 original size:29 final size:29
Alignment explanation
Indices: 33214--33271 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
33204 GTGTTGGCCG
*
33214 TAGGTCGCCATGCTTTCCGGGCGACCTAC
1 TAGGTCGCCATGCTTTCCCGGCGACCTAC
*
33243 TAGGTCGCCATG-TCTTCCCGGCGAGCTAC
1 TAGGTCGCCATGCT-TTCCCGGCGACCTAC
33272 AAGAGATTGC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 1 0.04
29 25 0.96
ACGTcount: A:0.14, C:0.34, G:0.28, T:0.24
Consensus pattern (29 bp):
TAGGTCGCCATGCTTTCCCGGCGACCTAC
Found at i:33335 original size:14 final size:14
Alignment explanation
Indices: 33316--33375 Score: 66
Period size: 14 Copynumber: 3.9 Consensus size: 14
33306 TTGGGCATCT
33316 GAGGCCATCCGACC
1 GAGGCCATCCGACC
33330 GAGGCCATCCGAGAGCATCC
1 GAGGCCATCC----G-A-CC
33350 GAGGCCATCCGACC
1 GAGGCCATCCGACC
33364 GAGGCCATCCGA
1 GAGGCCATCCGA
33376 ACAAGCTATG
Statistics
Matches: 40, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
14 24 0.60
15 1 0.03
16 1 0.03
18 1 0.03
19 1 0.03
20 12 0.30
ACGTcount: A:0.23, C:0.38, G:0.30, T:0.08
Consensus pattern (14 bp):
GAGGCCATCCGACC
Found at i:33348 original size:34 final size:34
Alignment explanation
Indices: 33310--33375 Score: 123
Period size: 34 Copynumber: 1.9 Consensus size: 34
33300 AACACGTTGG
*
33310 GCATCTGAGGCCATCCGACCGAGGCCATCCGAGA
1 GCATCCGAGGCCATCCGACCGAGGCCATCCGAGA
33344 GCATCCGAGGCCATCCGACCGAGGCCATCCGA
1 GCATCCGAGGCCATCCGACCGAGGCCATCCGA
33376 ACAAGCTATG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.23, C:0.38, G:0.29, T:0.11
Consensus pattern (34 bp):
GCATCCGAGGCCATCCGACCGAGGCCATCCGAGA
Found at i:33375 original size:10 final size:10
Alignment explanation
Indices: 33328--33361 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
33318 GGCCATCCGA
33328 CCGAGGCCAT
1 CCGAGGCCAT
33338 CCGAGAG-CAT
1 CCGAG-GCCAT
33348 CCGAGGCCAT
1 CCGAGGCCAT
33358 CCGA
1 CCGA
33362 CCGAGGCCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
9 1 0.05
10 20 0.91
11 1 0.05
ACGTcount: A:0.24, C:0.38, G:0.29, T:0.09
Consensus pattern (10 bp):
CCGAGGCCAT
Found at i:33409 original size:33 final size:33
Alignment explanation
Indices: 33362--33432 Score: 106
Period size: 33 Copynumber: 2.2 Consensus size: 33
33352 GGCCATCCGA
* *
33362 CCGAGGCCATCCGAACAAGCTATGCGAGGGCAT
1 CCGAGGCCAACCGAACAAGCTATGCGAGGGAAT
* *
33395 CCGAGGGCAACCGAACGAGCTATGCGAGGGAAT
1 CCGAGGCCAACCGAACAAGCTATGCGAGGGAAT
33428 CCGAG
1 CCGAG
33433 CCAGGGTAGG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.28, C:0.28, G:0.34, T:0.10
Consensus pattern (33 bp):
CCGAGGCCAACCGAACAAGCTATGCGAGGGAAT
Found at i:33486 original size:29 final size:29
Alignment explanation
Indices: 33440--33495 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
33430 GAGCCAGGGT
*
33440 AGGTCACCCGGAGTGCATGACGACCTACA
1 AGGTCACCCGGAGGGCATGACGACCTACA
* *
33469 AGGTCGCCCGGAGGGCATGGCGACCTA
1 AGGTCACCCGGAGGGCATGACGACCTA
33496 TGTGTTGGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.23, C:0.30, G:0.34, T:0.12
Consensus pattern (29 bp):
AGGTCACCCGGAGGGCATGACGACCTACA
Found at i:33598 original size:29 final size:29
Alignment explanation
Indices: 33563--33639 Score: 127
Period size: 29 Copynumber: 2.7 Consensus size: 29
33553 TAGGTCGCAT
33563 GGAGTGCATGGCGACCTACAAAGTCGCCA
1 GGAGTGCATGGCGACCTACAAAGTCGCCA
* *
33592 GGAGTGCATGGCGACCTACAAGGTCGCCC
1 GGAGTGCATGGCGACCTACAAAGTCGCCA
*
33621 GGAGTGCATGGTGACCTAC
1 GGAGTGCATGGCGACCTAC
33640 GGCCAACACT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.23, C:0.27, G:0.34, T:0.16
Consensus pattern (29 bp):
GGAGTGCATGGCGACCTACAAAGTCGCCA
Found at i:34449 original size:24 final size:24
Alignment explanation
Indices: 34393--34450 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
34383 ATGTTATGTT
* *
34393 TGTTCGTTTATGTTCGTTCATTTG
1 TGTTCGTTTACGTTCGTTCATTTA
*
34417 TATTCGTTTACGTTCGTTCATTTA
1 TGTTCGTTTACGTTCGTTCATTTA
*
34441 TGTTGGTTTA
1 TGTTCGTTTA
34451 TCATTTTAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.12, C:0.12, G:0.19, T:0.57
Consensus pattern (24 bp):
TGTTCGTTTACGTTCGTTCATTTA
Found at i:34926 original size:19 final size:19
Alignment explanation
Indices: 34902--35030 Score: 116
Period size: 19 Copynumber: 7.3 Consensus size: 19
34892 TTGGTCTAAA
34902 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
34921 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
34935 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
34954 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
34968 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
34987 TGCGATTTTGGTTTCACGT
1 TGCGATTTTGGTTTCGCGT
* *
35006 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
35026 TGCGA
1 TGCGA
35031 AAGTAAACTA
Statistics
Matches: 88, Mismatches: 11, Indels: 21
0.73 0.09 0.17
Matches are distributed among these distances:
14 22 0.25
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 47 0.53
20 12 0.14
ACGTcount: A:0.09, C:0.17, G:0.28, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:34940 original size:33 final size:33
Alignment explanation
Indices: 34902--34993 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
34892 TTGGTCTAAA
34902 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
34935 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
34968 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
34994 TTGGTTTCAC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 54 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.18, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:34959 original size:52 final size:51
Alignment explanation
Indices: 34902--35030 Score: 127
Period size: 52 Copynumber: 2.5 Consensus size: 51
34892 TTGGTCTAAA
* * *
34902 TGCGATTTTGGTTTCGCGTTGCGATCTT-GTCGTTGCGATTTTGGTTTCGCGT
1 TGCGATTTTAGTTTCGAGTTGCGAT-TTCG-CGTTGCGATTTTGGTTTCACGT
* * * *
34954 TGCGATTCTGTCGTTGCGATTTTC-ATTTCGCGTTGCGATTTTGGTTTCACGT
1 TGCGATT-T-TAGTTTCGAGTTGCGATTTCGCGTTGCGATTTTGGTTTCACGT
*
35006 TGCGATTTTAAGTTTCGTGTTGCGA
1 TGCGATTTT-AGTTTCGAGTTGCGA
35031 AAGTAAACTA
Statistics
Matches: 61, Mismatches: 11, Indels: 10
0.74 0.13 0.12
Matches are distributed among these distances:
50 1 0.02
51 9 0.15
52 38 0.62
53 4 0.07
54 9 0.15
ACGTcount: A:0.09, C:0.17, G:0.28, T:0.46
Consensus pattern (51 bp):
TGCGATTTTAGTTTCGAGTTGCGATTTCGCGTTGCGATTTTGGTTTCACGT
Found at i:35194 original size:93 final size:93
Alignment explanation
Indices: 35078--35360 Score: 541
Period size: 93 Copynumber: 3.1 Consensus size: 93
35068 ATGGATTGCA
*
35078 TTAC-TTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAATT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
35142 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
35170 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
35235 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
35263 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
*
35328 TAGCAGAATTGGCAGCAACCGAATAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
35356 TTACT
1 TTACT
35361 AAGCAATCTA
Statistics
Matches: 188, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
92 4 0.02
93 184 0.98
ACGTcount: A:0.46, C:0.19, G:0.12, T:0.22
Consensus pattern (93 bp):
TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
TAGCAGAATTGGCAGCAACCGAACAAAT
Found at i:37085 original size:14 final size:14
Alignment explanation
Indices: 37066--37122 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
37056 TTGAAATGAA
37066 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
37080 AATCGCAACGCGAAATGAC
1 AATCGCAA--CG--A-GAG
37099 AATCGCAACGAGAG
1 AATCGCAACGAGAG
37113 AATCGCAACG
1 AATCGCAACG
37123 CGAAATGAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.28
ACGTcount: A:0.42, C:0.25, G:0.25, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:37103 original size:33 final size:33
Alignment explanation
Indices: 37058--37144 Score: 165
Period size: 33 Copynumber: 2.6 Consensus size: 33
37048 TCTTTTGGTT
37058 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
*
37091 GAAATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
37124 GAAATGAAAATCGCAACGAGA
1 GAAATGAAAATCGCAACGAGA
37145 AATAAAATCG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 52 1.00
ACGTcount: A:0.46, C:0.21, G:0.24, T:0.09
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:37104 original size:19 final size:19
Alignment explanation
Indices: 37080--37162 Score: 88
Period size: 19 Copynumber: 4.7 Consensus size: 19
37070 GCAACGAGAG
*
37080 AATCGCAACGCGAAATGAC
1 AATCGCAACGCGAAATGAA
*
37099 AATCGCAA--CG--A-GAG
1 AATCGCAACGCGAAATGAA
37113 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
37132 AATCGCAACGAGAAAT-AA
1 AATCGCAACGCGAAATGAA
*
37150 AATCGCAATGCGA
1 AATCGCAACGCGA
37163 TTTTGGTTTC
Statistics
Matches: 54, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
14 10 0.19
15 1 0.02
16 2 0.04
17 2 0.04
18 14 0.26
19 25 0.46
ACGTcount: A:0.46, C:0.22, G:0.22, T:0.11
Consensus pattern (19 bp):
AATCGCAACGCGAAATGAA
Found at i:37193 original size:14 final size:14
Alignment explanation
Indices: 37174--37230 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
37164 TTTGGTTTCG
37174 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
37188 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
37207 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
37221 CGTTGCGATT
1 CGTTGCGATT
37231 TTCATTTCTC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
16 3 0.08
17 3 0.08
19 10 0.28
ACGTcount: A:0.09, C:0.25, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:37206 original size:33 final size:33
Alignment explanation
Indices: 37158--37238 Score: 144
Period size: 33 Copynumber: 2.5 Consensus size: 33
37148 AAAATCGCAA
**
37158 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
37191 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
37224 TGCGATTTTCATTTC
1 TGCGATTTTCATTTC
37239 TCTCGTTGCG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.09, C:0.22, G:0.22, T:0.47
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:37241 original size:21 final size:21
Alignment explanation
Indices: 37215--37290 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
37205 CGCGTTGCGA
37215 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
***
37236 TTCTCTCGTTGCGACAGTCA-
1 TTCTCTCGTTGCGATTTTCAT
37256 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
*
37277 TTATCTCGTTGCGA
1 TTCTCTCGTTGCGA
37291 CTCTTCTGCA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
20 17 0.36
21 30 0.64
ACGTcount: A:0.12, C:0.25, G:0.17, T:0.46
Consensus pattern (21 bp):
TTCTCTCGTTGCGATTTTCAT
Found at i:37271 original size:41 final size:41
Alignment explanation
Indices: 37214--37291 Score: 147
Period size: 41 Copynumber: 1.9 Consensus size: 41
37204 TCGCGTTGCG
*
37214 ATTCTCTCGTTGCGATTTTCATTTCTCTCGTTGCGACAGTC
1 ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGACAGTC
37255 ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGAC
1 ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGAC
37292 TCTTCTGCAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.13, C:0.26, G:0.17, T:0.45
Consensus pattern (41 bp):
ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGACAGTC
Found at i:37412 original size:33 final size:33
Alignment explanation
Indices: 37370--37440 Score: 106
Period size: 33 Copynumber: 2.2 Consensus size: 33
37360 AATACTAACT
* *
37370 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAAAATAGCAACGCGAAA
* *
37403 TGAAAATCGCAACGACAAAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAAAATAGCAACGCGAAA
37436 TGAAA
1 TGAAA
37441 TCTAAGTGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.49, C:0.18, G:0.21, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAAAATAGCAACGCGAAA
Found at i:37674 original size:22 final size:22
Alignment explanation
Indices: 37622--37676 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
37612 TGGTTGTGAG
**
37622 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
37644 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
37666 GGATTTCTTCG
1 GGATTTCTTCG
37677 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:37848 original size:20 final size:20
Alignment explanation
Indices: 37823--37996 Score: 217
Period size: 20 Copynumber: 8.7 Consensus size: 20
37813 CTTTAAATAT
37823 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
37843 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
37865 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
37884 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
37904 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
37924 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
37944 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
37964 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
37984 CGCGTTGCGATTT
1 CGCGTTGCGATTT
37997 GCGTTTTTCA
Statistics
Matches: 132, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
19 2 0.02
20 113 0.86
21 15 0.11
22 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.34
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:37988 original size:60 final size:60
Alignment explanation
Indices: 37825--37996 Score: 245
Period size: 60 Copynumber: 2.9 Consensus size: 60
37815 TTAAATATCG
** *
37825 CGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATACG
1 CGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATACA
* * *** *
37886 CGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATACA
1 CGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATACA
*
37946 CGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCGATTT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTT
37997 GCGTTTTTCA
Statistics
Matches: 95, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
60 69 0.73
61 26 0.27
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.35
Consensus pattern (60 bp):
CGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATACA
Found at i:38034 original size:21 final size:21
Alignment explanation
Indices: 38010--38127 Score: 80
Period size: 21 Copynumber: 5.7 Consensus size: 21
38000 TTTTTCATAT
38010 TCGCGTTGCGATTTTGGAAAA
1 TCGCGTTGCGATTTTGGAAAA
** * * **
38031 TCGCAATGCGAATTTGTACTA
1 TCGCGTTGCGATTTTGGAAAA
* *
38052 TCGCATTGCGATTTT-CAAGAA
1 TCGCGTTGCGATTTTGGAA-AA
*
38073 TCGCGTTGCGATTTTGGAAAC
1 TCGCGTTGCGATTTTGGAAAA
** * **
38094 T-GATTTGCGATTCTGG-GGA
1 TCGCGTTGCGATTTTGGAAAA
38113 TCGCGTTGCGATTTT
1 TCGCGTTGCGATTTT
38128 TATTTCGCGT
Statistics
Matches: 71, Mismatches: 23, Indels: 7
0.70 0.23 0.07
Matches are distributed among these distances:
19 1 0.01
20 23 0.32
21 45 0.63
22 2 0.03
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.36
Consensus pattern (21 bp):
TCGCGTTGCGATTTTGGAAAA
Found at i:40238 original size:29 final size:29
Alignment explanation
Indices: 40206--40278 Score: 112
Period size: 29 Copynumber: 2.5 Consensus size: 29
40196 GGTCGCCATA
40206 CACTCCGGGCGACCTTATAGGT-AGACATG
1 CACTCCGGGCGACCTTATAGGTCA-ACATG
* *
40235 CACTCCGGGCGACCTTGTAGGTCACCATG
1 CACTCCGGGCGACCTTATAGGTCAACATG
40264 CACTCCGGGCGACCT
1 CACTCCGGGCGACCT
40279 ACCCTTGCTC
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
29 40 0.98
30 1 0.02
ACGTcount: A:0.19, C:0.34, G:0.27, T:0.19
Consensus pattern (29 bp):
CACTCCGGGCGACCTTATAGGTCAACATG
Found at i:40360 original size:29 final size:29
Alignment explanation
Indices: 40318--40373 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
40308 TCCCAACACA
40318 TAGGTCGCCATGCCCTCCGGGCGACCTTG
1 TAGGTCGCCATGCCCTCCGGGCGACCTTG
40347 TAGGTCGCCATGCCCTCCGGGCGACCT
1 TAGGTCGCCATGCCCTCCGGGCGACCT
40374 ACCCTCGCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.11, C:0.39, G:0.30, T:0.20
Consensus pattern (29 bp):
TAGGTCGCCATGCCCTCCGGGCGACCTTG
Found at i:40407 original size:23 final size:23
Alignment explanation
Indices: 40377--40426 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
40367 GCGACCTACC
*
40377 CTCGCTCGGCTT-CCCTCGGATAG
1 CTCGCTCGG-TTGCCCTCGCATAG
*
40400 CTCGCTCGGTTGCCCTTGCATAG
1 CTCGCTCGGTTGCCCTCGCATAG
40423 CTCG
1 CTCG
40427 TTCGAATAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 2 0.08
23 22 0.92
ACGTcount: A:0.08, C:0.38, G:0.26, T:0.28
Consensus pattern (23 bp):
CTCGCTCGGTTGCCCTCGCATAG
Found at i:40467 original size:20 final size:20
Alignment explanation
Indices: 40442--40479 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
40432 ATAGCCTCGG
*
40442 TCGGATGGCCTCGGATGCTC
1 TCGGATGGCCTCAGATGCTC
40462 TCGGATGGCCTCAGATGC
1 TCGGATGGCCTCAGATGC
40480 CCAGCGTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.13, C:0.29, G:0.34, T:0.24
Consensus pattern (20 bp):
TCGGATGGCCTCAGATGCTC
Found at i:40555 original size:29 final size:29
Alignment explanation
Indices: 40518--40575 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
40508 GCAATCTCTT
*
40518 GTAGCTCGCCGGGAAGACATGGCGACCTA
1 GTAGCTCGCCCGGAAGACATGGCGACCTA
* *
40547 GTAGGTCGCCCGGAAGGCATGGCGACCTA
1 GTAGCTCGCCCGGAAGACATGGCGACCTA
40576 CGGCCAACAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.22, C:0.28, G:0.36, T:0.14
Consensus pattern (29 bp):
GTAGCTCGCCCGGAAGACATGGCGACCTA
Found at i:41137 original size:38 final size:38
Alignment explanation
Indices: 41093--41189 Score: 158
Period size: 38 Copynumber: 2.5 Consensus size: 38
41083 ATTAAAAACA
41093 TAAAATATATATTTTTAAAACATTTAATCAAATATTTT
1 TAAAATATATATTTTTAAAACATTTAATCAAATATTTT
* * *
41131 TTAAATATATATTTTAAAAACATTTAATCAAATGTTTT
1 TAAAATATATATTTTTAAAACATTTAATCAAATATTTT
41169 TAAAATATATATTTTATAAAA
1 TAAAATATATATTTT-TAAAA
41190 TTGATTTTTA
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
38 49 0.92
39 4 0.08
ACGTcount: A:0.48, C:0.04, G:0.01, T:0.46
Consensus pattern (38 bp):
TAAAATATATATTTTTAAAACATTTAATCAAATATTTT
Found at i:41182 original size:27 final size:29
Alignment explanation
Indices: 41152--41205 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
41142 TTTTAAAAAC
*
41152 ATTTAATCAAA-TG-TTTTTAAAATATAT
1 ATTTAATAAAATTGATTTTTAAAATATAT
*
41179 ATTTTATAAAATTGATTTTTAAAATAT
1 ATTTAATAAAATTGATTTTTAAAATAT
41206 TTAAAATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 9 0.39
28 2 0.09
29 12 0.52
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (29 bp):
ATTTAATAAAATTGATTTTTAAAATATAT
Found at i:45836 original size:16 final size:16
Alignment explanation
Indices: 45815--45846 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
45805 ACTATTCACA
*
45815 TGAATAGTGAATTTCG
1 TGAATAGTGAAATTCG
45831 TGAATAGTGAAATTCG
1 TGAATAGTGAAATTCG
45847 GTCGGCGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.34
Consensus pattern (16 bp):
TGAATAGTGAAATTCG
Found at i:46614 original size:15 final size:16
Alignment explanation
Indices: 46596--46628 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
46586 GTGGCAGATC
46596 AAAATCCAG-ACGGGA
1 AAAATCCAGAACGGGA
*
46611 AAAATCTAGAACGGGA
1 AAAATCCAGAACGGGA
46627 AA
1 AA
46629 GAAAGATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.52, C:0.15, G:0.24, T:0.09
Consensus pattern (16 bp):
AAAATCCAGAACGGGA
Found at i:51241 original size:21 final size:20
Alignment explanation
Indices: 51206--51253 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 20
51196 AATAATTGTT
*
51206 TTAAGAAAAAAATATATATA
1 TTAATAAAAAAATATATATA
* *
51226 TTAATAAAATAAATATTTTTA
1 TTAATAAAA-AAATATATATA
51247 TTAATAA
1 TTAATAA
51254 TTATCGAAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (20 bp):
TTAATAAAAAAATATATATA
Found at i:52514 original size:6 final size:7
Alignment explanation
Indices: 52503--52543 Score: 50
Period size: 8 Copynumber: 5.9 Consensus size: 7
52493 TATATCGATT
52503 TTAT-TA
1 TTATATA
52509 TTAT-TA
1 TTATATA
52515 TTATATA
1 TTATATA
52522 TATATATA
1 T-TATATA
52530 TATATATA
1 T-TATATA
52538 TTATAT
1 TTATAT
52544 GATAGGATAG
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
6 10 0.30
7 8 0.24
8 15 0.45
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
TTATATA
Found at i:52726 original size:2 final size:2
Alignment explanation
Indices: 52715--52746 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
52705 ATATTAACCC
52715 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
52747 CACGTACTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:69716 original size:23 final size:23
Alignment explanation
Indices: 69690--69746 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
69680 TTTGATTTAT
*
69690 TTTATTGTTGTT-GTTTACATTCA
1 TTTATTG-TGTTCGATTACATTCA
*
69713 TTTATTGTGTTCGATTATATTCA
1 TTTATTGTGTTCGATTACATTCA
*
69736 TTTATTATGTT
1 TTTATTGTGTT
69747 TGTGAAGGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
22 4 0.13
23 26 0.87
ACGTcount: A:0.19, C:0.07, G:0.12, T:0.61
Consensus pattern (23 bp):
TTTATTGTGTTCGATTACATTCA
Found at i:69780 original size:23 final size:23
Alignment explanation
Indices: 69754--69833 Score: 83
Period size: 23 Copynumber: 3.4 Consensus size: 23
69744 GTTTGTGAAG
69754 GTTCGTTTATGTTCATTTATTGT
1 GTTCGTTTATGTTCATTTATTGT
* *
69777 GTTCGTTTATGTTTCGTTTACGTTCAT
1 GTTCGTTTATG-TTCATTTA--TT-GT
69804 -TT-GTTTATGTTCATTTATTGT
1 GTTCGTTTATGTTCATTTATTGT
*
69825 GCTCGTTTA
1 GTTCGTTTA
69834 CATATGTTCG
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
21 1 0.02
22 3 0.07
23 16 0.35
24 14 0.30
25 7 0.15
26 4 0.09
27 1 0.02
ACGTcount: A:0.12, C:0.11, G:0.17, T:0.59
Consensus pattern (23 bp):
GTTCGTTTATGTTCATTTATTGT
Found at i:69794 original size:11 final size:11
Alignment explanation
Indices: 69755--69796 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
69745 TTTGTGAAGG
69755 TTCGTTTATG-
1 TTCGTTTATGT
*
69765 TTCATTTATTGT
1 TTCGTTTA-TGT
69777 GTTCGTTTATGT
1 -TTCGTTTATGT
69789 TTCGTTTA
1 TTCGTTTA
69797 CGTTCATTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
10 7 0.26
11 10 0.37
12 3 0.11
13 7 0.26
ACGTcount: A:0.12, C:0.10, G:0.17, T:0.62
Consensus pattern (11 bp):
TTCGTTTATGT
Found at i:70666 original size:38 final size:36
Alignment explanation
Indices: 70631--70700 Score: 97
Period size: 37 Copynumber: 1.9 Consensus size: 36
70621 TACAAATTGT
70631 AAAATATTTATAT-ATTTTCTTTAAAAAAATTAAATTC
1 AAAATATTTATATAATTTT-TTT-AAAAAATTAAATTC
* *
70668 ATAATATTTATATAATTTTTTTACAAAATTAAA
1 AAAATATTTATATAATTTTTTTAAAAAATTAAA
70701 AATATAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
36 10 0.33
37 15 0.50
38 5 0.17
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (36 bp):
AAAATATTTATATAATTTTTTTAAAAAATTAAATTC
Found at i:77505 original size:40 final size:40
Alignment explanation
Indices: 77442--77539 Score: 155
Period size: 40 Copynumber: 2.5 Consensus size: 40
77432 AGAATAATGA
*
77442 CTCCACCCGAAATCCAA-C-CTAACCCGCATAATATACACC
1 CTCCACCCG-AATCGAACCTCTAACCCGCATAATATACACC
*
77481 CTCCACTCGAATCGAACCTCTAACCCGCATAATATACACC
1 CTCCACCCGAATCGAACCTCTAACCCGCATAATATACACC
77521 CTCCACCCGAATCGAACCT
1 CTCCACCCGAATCGAACCT
77540 GATTTTTTAA
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
38 6 0.11
39 9 0.17
40 39 0.72
ACGTcount: A:0.33, C:0.43, G:0.07, T:0.17
Consensus pattern (40 bp):
CTCCACCCGAATCGAACCTCTAACCCGCATAATATACACC
Found at i:77528 original size:22 final size:22
Alignment explanation
Indices: 77463--77529 Score: 54
Period size: 22 Copynumber: 3.2 Consensus size: 22
77453 ATCCAACCTA
77463 ACCCGCATAATATACACCCTCC
1 ACCCGCATAATATACACCCTCC
* ** *
77485 ACTCG---AATCGA-A-CCTCTA
1 ACCCGCATAATATACACCCTC-C
77503 ACCCGCATAATATACACCCTCC
1 ACCCGCATAATATACACCCTCC
77525 ACCCG
1 ACCCG
77530 AATCGAACCT
Statistics
Matches: 31, Mismatches: 8, Indels: 12
0.61 0.16 0.24
Matches are distributed among these distances:
17 4 0.13
18 5 0.16
19 4 0.13
21 4 0.13
22 10 0.32
23 4 0.13
ACGTcount: A:0.31, C:0.43, G:0.07, T:0.18
Consensus pattern (22 bp):
ACCCGCATAATATACACCCTCC
Found at i:83621 original size:16 final size:16
Alignment explanation
Indices: 83600--83635 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
83590 ATCAGGGTTC
83600 GAATCCTGACGTTTGG
1 GAATCCTGACGTTTGG
83616 GAATCCTGACGTTTGG
1 GAATCCTGACGTTTGG
83632 GAAT
1 GAAT
83636 AGAGTAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.31
Consensus pattern (16 bp):
GAATCCTGACGTTTGG
Done.