genome.fa.s4799.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004799.1 Hibiscus syriacus cultivar Beakdansim tig00010812_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81397

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1623--1720	36	2.7	37	92	7	166	47	6	0	45	1.27
1905--1975	19	3.9	18	77	7	63	50	1	2	45	1.25
2015--2078	21	3.0	20	75	8	65	46	3	3	46	1.34
10031--10075	21	2.1	21	88	8	65	22	0	28	48	1.50
15623--15664	2	21.0	2	100	0	84	50	50	0	0	1.00
15664--15690	2	13.5	2	100	0	54	51	0	0	48	1.00
18008--18042	15	2.2	16	90	5	54	17	5	11	65	1.43
32749--32879	61	2.2	59	83	6	156	43	13	15	27	1.84
40449--40485	7	5.4	7	93	6	67	24	29	29	16	1.96
40449--40485	13	2.7	14	91	8	67	24	29	29	16	1.96
40475--40532	17	3.4	17	90	0	89	17	24	39	18	1.92
40526--40597	19	3.8	19	92	5	119	25	31	26	16	1.96
40526--40614	9	9.3	9	76	11	79	26	29	25	17	1.98
46485--46564	41	2.0	41	94	0	142	50	13	17	18	1.79
47453--47525	36	2.0	36	94	0	128	23	20	23	32	1.98
47689--48630	516	1.8	517	85	3	1345	17	29	11	40	1.85
47614--48630	261	3.9	261	83	3	1271	17	29	11	41	1.85
49373--49413	14	2.8	14	92	7	64	34	2	0	63	1.08
50883--50934	21	2.5	21	81	3	61	38	19	25	17	1.93
50923--51016	20	4.7	20	77	7	82	32	23	19	24	1.97
51573--51614	19	2.2	19	91	0	66	52	26	16	4	1.63
51610--51794	19	10.1	19	75	14	165	11	21	22	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51683--51769	33	2.6	34	87	7	124	11	24	26	37	1.89
51737--51794	20	2.9	20	80	10	64	13	24	18	43	1.87
53854--53920	21	3.2	21	66	6	55	23	35	20	19	1.95
53802--53920	42	2.8	42	81	5	107	22	36	18	22	1.95
55280--55315	14	2.6	14	95	0	63	30	0	25	44	1.54
55422--55475	20	2.8	19	91	5	90	46	20	20	12	1.83
55484--55610	33	3.9	32	84	8	175	14	21	19	44	1.87
55480--55610	19	7.7	19	63	23	76	14	21	19	44	1.86
55477--55609	66	2.0	66	97	0	248	16	21	19	42	1.89
57902--57926	12	2.1	12	100	0	50	0	28	0	72	0.86
58101--58154	24	2.2	24	90	0	81	38	20	16	24	1.92
59191--59228	20	1.9	20	94	0	67	39	23	21	15	1.92
59265--59367	19	5.6	19	76	13	108	14	21	17	46	1.83
59247--59377	53	2.5	53	79	10	162	14	21	18	45	1.84
59484--59521	14	2.7	15	84	12	53	47	18	0	34	1.49
61388--61455	20	3.5	19	82	6	82	38	23	23	14	1.92
61444--61501	14	3.9	14	79	16	71	48	25	17	8	1.75
61428--61506	32	2.4	33	95	2	142	46	24	18	10	1.80
61513--61608	19	5.6	17	72	21	78	11	19	22	45	1.82
61535--61592	14	3.9	14	79	16	71	8	17	25	48	1.75
61518--61608	32	2.8	33	94	3	166	10	18	23	47	1.80
61593--61647	20	2.8	19	83	8	65	16	23	23	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62129--62173	18	2.5	18	88	0	72	13	15	44	26	1.83
63492--63529	20	1.9	20	88	0	58	50	21	15	13	1.78
63794--63837	22	2.0	22	95	0	79	18	15	45	20	1.85
64011--64140	41	3.2	41	77	6	147	23	16	25	34	1.95
64025--64138	20	5.7	20	80	6	113	24	17	26	31	1.97
64128--64220	20	4.5	21	78	4	100	17	24	18	39	1.91
64128--64220	41	2.3	41	100	0	150	17	24	18	39	1.91
69615--69763	72	2.1	72	92	0	244	32	18	13	35	1.90
72279--72338	31	1.9	32	89	3	95	46	6	6	40	1.56
72481--72508	2	14.0	2	100	0	56	0	50	0	50	1.00
78863--78894	2	16.0	2	93	0	55	0	46	3	50	1.17

Tables:   1

The End!