Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000048.1 Hibiscus syriacus cultivar Beakdansim tig00000074_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62163

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3266--3329
24
2.6
25
72
16
62
70
1
4
23
1.15
3419--3459
20
2.1
19
90
4
64
58
12
12
17
1.63
4893--5777
84
10.5
84
72
13
432
23
19
22
34
1.96
5116--5337
109
2.0
110
91
0
356
22
19
23
34
1.97
5226--5777
83
6.8
83
77
9
530
23
18
22
35
1.96
5297--5440
71
2.0
71
93
0
243
25
20
22
32
1.98
5368--5777
163
2.5
165
83
4
520
23
18
22
35
1.95
5494--6263
320
2.5
299
83
6
840
23
19
23
34
1.97
5777--6263
80
6.1
80
90
0
733
23
19
23
33
1.97
7098--7306
98
2.1
98
88
2
303
33
18
15
33
1.92
9901--9985
14
5.9
14
71
17
50
69
1
3
25
1.12
9907--9998
17
5.1
18
73
19
77
71
1
3
23
1.07
9911--9998
45
2.0
45
86
8
126
71
1
3
23
1.08
10085--10123
20
2.0
20
94
0
69
56
10
12
20
1.65
12136--12293
81
2.0
81
91
2
255
41
18
13
26
1.87
12388--12417
11
2.7
11
100
0
60
6
36
0
56
1.26
12572--12657
45
2.0
42
84
8
111
53
10
13
22
1.70
13102--13157
29
1.9
29
82
7
69
64
0
5
30
1.16
16326--16350
2
12.5
2
100
0
50
48
0
0
52
1.00
24652--24714
20
3.2
19
75
8
63
44
15
0
39
1.47
24893--24946
28
1.9
28
88
0
81
29
7
33
29
1.85
27087--27153
30
2.2
30
94
0
116
25
19
23
31
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28245--28330
43
2.0
43
97
0
163
39
12
9
38
1.76
28691--28740
10
5.0
10
82
0
55
26
30
0
44
1.55
28770--28816
17
2.8
17
83
3
60
31
0
4
63
1.13
28762--28808
21
2.2
21
82
14
53
31
0
4
63
1.13
32590--32688
31
3.2
31
73
15
80
43
12
7
37
1.69
32603--32691
31
2.8
31
83
5
99
44
13
5
35
1.67
43223--43287
31
2.1
31
85
5
87
43
9
23
24
1.83
43663--43695
16
2.1
16
100
0
66
57
24
12
6
1.57
43759--43813
16
3.4
16
92
0
92
56
20
12
10
1.66
44901--44949
24
2.0
24
96
0
89
55
24
10
10
1.64
46711--46751
20
2.0
20
95
0
73
19
58
9
12
1.61
47321--47358
2
19.0
2
100
0
76
50
0
0
50
1.00
48613--48654
19
2.2
19
100
0
84
19
35
30
14
1.91
49376--49505
66
2.0
66
84
6
174
36
23
20
20
1.95
52771--52820
21
2.3
21
86
6
64
60
0
2
38
1.09
61807--61842
15
2.4
15
90
0
54
36
33
16
13
1.89

Tables:   1

The End!