Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000480.1 Hibiscus syriacus cultivar Beakdansim tig00000910_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 869251
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 5
Found at i:1974 original size:183 final size:184
Alignment explanation
Indices: 1320--2350 Score: 1864
Period size: 182 Copynumber: 5.7 Consensus size: 184
1310 CTTTTAACAT
* *
1320 ATTATAAT-AAATAGAT-ATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGAGCGAATA
1383 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
1448 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
* * * *
1502 ATTATAATGTAATAGATAATTTTATAATATAACCGGTATAAATATACCGATTTTATGAGCCAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGAGCGAATA
1567 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCC--ATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
*
1630 AATGTGTCGATACAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
*
1684 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGAGCGAATA
1749 GGTCTACAACCTATATCGACACTTTTTAATATTGTG-CGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
1813 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
* * *
1867 ATTATAATGT-ATAGATAATTTTATAATATAACCGGTATAAATATACCGGTTTTATGAGCCAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGAGCGAATA
1931 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
1996 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
*
2050 ATTATAATGTAATAGATAATTTTGTAATATAACC-GTATAAATATACCGGTCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGAGCGAATA
*
2114 GGTCTACAACCTATCTCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
2179 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
*
2233 ATTAT-ATGTAATAGATAATTTTGTAATATAACCGGTATAAA-ATACCGGTTTTATGAGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGAGCGAATA
*
2296 GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCATA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATA
2351 CCATTTAAAA
Statistics
Matches: 816, Mismatches: 26, Indels: 14
0.95 0.03 0.02
Matches are distributed among these distances:
181 15 0.02
182 355 0.44
183 330 0.40
184 116 0.14
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (184 bp):
ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGAGCGAATA
GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
Found at i:2017 original size:366 final size:368
Alignment explanation
Indices: 1320--2350 Score: 1936
Period size: 366 Copynumber: 2.8 Consensus size: 368
1310 CTTTTAACAT
*
1320 ATTATAAT-AAATAGAT-ATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1383 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
1448 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATAATTATAATGTA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATAATTATAATGTA
*
1513 ATAGATAATTTTATAATATAACCGGTATAAATATACCGATTTTATGAGCCAATAGGTCTACAACC
196 ATAGATAATTTTATAATATAACCGGTATAAATATACCGGTTTTATGAGCCAATAGGTCTACAACC
1578 TATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCC--ATTGGAAGAAAAATGTGTCGAT
261 TATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGAT
1641 ACAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
326 ACAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
1684 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1749 GGTCTACAACCTATATCGACACTTTTTAATATTGTG-CGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
1813 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATAATTATAATGT-
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATAATTATAATGTA
1877 ATAGATAATTTTATAATATAACCGGTATAAATATACCGGTTTTATGAGCCAATAGGTCTACAACC
196 ATAGATAATTTTATAATATAACCGGTATAAATATACCGGTTTTATGAGCCAATAGGTCTACAACC
1942 TATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGAT
261 TATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGAT
*
2007 ACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
326 ACAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
2050 ATTATAATGTAATAGATAATTTTGTAATATAACC-GTATAAATATACCGGTCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
*
2114 GGTCTACAACCTATCTCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
2179 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATAATTAT-ATGTA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATAATTATAATGTA
* *
2243 ATAGATAATTTTGTAATATAACCGGTATAAA-ATACCGGTTTTATGAGCGAATAGGTCTACAACC
196 ATAGATAATTTTATAATATAACCGGTATAAATATACCGGTTTTATGAGCCAATAGGTCTACAACC
*
2307 TATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCATA
261 TATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATA
2351 CCATTTAAAA
Statistics
Matches: 654, Mismatches: 7, Indels: 11
0.97 0.01 0.02
Matches are distributed among these distances:
364 113 0.17
365 243 0.37
366 298 0.46
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (368 bp):
ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATAATTATAATGTA
ATAGATAATTTTATAATATAACCGGTATAAATATACCGGTTTTATGAGCCAATAGGTCTACAACC
TATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGAT
ACAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
Found at i:4876 original size:21 final size:22
Alignment explanation
Indices: 4832--4878 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
4822 TAAGTTTTAA
* *
4832 AAAAAGTATCGATCATTTTTAT
1 AAAAAGTATCGATCACTTTCAT
*
4854 AAAAAGTATGGA-CACTTTCAT
1 AAAAAGTATCGATCACTTTCAT
4875 AAAA
1 AAAA
4879 TAGGTAAACA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.32
Consensus pattern (22 bp):
AAAAAGTATCGATCACTTTCAT
Found at i:4943 original size:23 final size:23
Alignment explanation
Indices: 4888--4950 Score: 83
Period size: 22 Copynumber: 2.8 Consensus size: 23
4878 ATAGGTAAAC
*
4888 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
4911 AT-TAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
4933 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
4951 TGGTTATATT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
22 18 0.53
23 16 0.47
ACGTcount: A:0.35, C:0.06, G:0.21, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:4957 original size:23 final size:23
Alignment explanation
Indices: 4888--4959 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 23
4878 ATAGGTAAAC
* **
4888 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGTGCTT
*
4911 AT-TAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
4933 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
4956 ATAT
1 ATAT
4960 TGTAAAGTGT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
22 17 0.41
23 23 0.56
24 1 0.02
ACGTcount: A:0.33, C:0.06, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:5340 original size:23 final size:23
Alignment explanation
Indices: 5314--5371 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 23
5304 GGTAAACATG
5314 ATGTAATAGGTAGCCCTTATATA
1 ATGTAATAGGTAGCCCTTATATA
* **
5337 ATGTAATAGGTATCGTTTATATA
1 ATGTAATAGGTAGCCCTTATATA
5360 ATGTAATAGGTA
1 ATGTAATAGGTA
5372 ATGGTTATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.36, C:0.07, G:0.19, T:0.38
Consensus pattern (23 bp):
ATGTAATAGGTAGCCCTTATATA
Found at i:5379 original size:23 final size:23
Alignment explanation
Indices: 5314--5381 Score: 84
Period size: 23 Copynumber: 3.0 Consensus size: 23
5304 GGTAAACATG
* **
5314 ATGTAATAGGTAGCCCTTATATA
1 ATGTAATAGGTATCGGTTATATA
*
5337 ATGTAATAGGTATCGTTTATATA
1 ATGTAATAGGTATCGGTTATATA
5360 ATGTAATAGGTAAT-GGTTATAT
1 ATGTAATAGGT-ATCGGTTATAT
5382 TGTAAAGTGT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
23 38 0.95
24 2 0.05
ACGTcount: A:0.35, C:0.06, G:0.19, T:0.40
Consensus pattern (23 bp):
ATGTAATAGGTATCGGTTATATA
Found at i:5767 original size:23 final size:23
Alignment explanation
Indices: 5741--5798 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 23
5731 GTAAACTATG
5741 ATGTAATAGGTAGCCCTTATATA
1 ATGTAATAGGTAGCCCTTATATA
* **
5764 ATGTAATAGGTATCGTTTATATA
1 ATGTAATAGGTAGCCCTTATATA
5787 ATGTAATAGGTA
1 ATGTAATAGGTA
5799 ATGGTTATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.36, C:0.07, G:0.19, T:0.38
Consensus pattern (23 bp):
ATGTAATAGGTAGCCCTTATATA
Found at i:5806 original size:23 final size:23
Alignment explanation
Indices: 5741--5808 Score: 84
Period size: 23 Copynumber: 3.0 Consensus size: 23
5731 GTAAACTATG
* **
5741 ATGTAATAGGTAGCCCTTATATA
1 ATGTAATAGGTATCGGTTATATA
*
5764 ATGTAATAGGTATCGTTTATATA
1 ATGTAATAGGTATCGGTTATATA
5787 ATGTAATAGGTAAT-GGTTATAT
1 ATGTAATAGGT-ATCGGTTATAT
5809 TGTAAAGTGT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
23 38 0.95
24 2 0.05
ACGTcount: A:0.35, C:0.06, G:0.19, T:0.40
Consensus pattern (23 bp):
ATGTAATAGGTATCGGTTATATA
Found at i:5836 original size:20 final size:20
Alignment explanation
Indices: 5811--5849 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
5801 GGTTATATTG
* *
5811 TAAAGTGTCTATCCTTTTTA
1 TAAAGTGTCCATACTTTTTA
5831 TAAAGTGTCCATACTTTTT
1 TAAAGTGTCCATACTTTTT
5850 TCACTGTGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.15, G:0.10, T:0.49
Consensus pattern (20 bp):
TAAAGTGTCCATACTTTTTA
Found at i:5935 original size:426 final size:430
Alignment explanation
Indices: 4791--6652 Score: 3514
Period size: 426 Copynumber: 4.4 Consensus size: 430
4781 AATTCGCAGT
*
4791 ACACTGTTAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCATTTTTATAA
1 ACACTGTTAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATAA
*
4856 AAAGTATGGACACTTTC-ATAAAATAGGTAAACATATGATGTAATAGGTAGCCCTTAT-TAATGT
66 AAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGT
*
4919 AATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTATA
131 AATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATA
4984 AAAGTGTCCATACTTTTTTCACTGT-GAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTA
196 AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTA
5048 AGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTA
261 AGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTA
5113 TTAAATTAAAAATTCT-AATAATATTTTATAAAATATAAAAACAATC-AATAATTTTTTGTGCAA
326 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCAA
5176 ATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
391 ATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
5216 ACACTGTTAAAAAATTGAAACAT-AATTACATAAGTTTT-AAAAAAGTATCGATCCTTTTTAT-A
1 ACACTGTTAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATAA
5278 AAAGTATGGACACTTTCAATATAATAGGTAAAC--ATGATGTAATAGGTAGCCCTTATATAATGT
66 AAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGT
5341 AATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATA
131 AATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATA
5406 AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTA
196 AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTA
5471 AGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTA
261 AGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTA
5536 TTAAATTAAAAATTCTAAATAATA-TTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCAA
326 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCAA
5600 ATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
391 ATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
5640 ACACTGTTAAAAAAATTGAAACAT-AATTACATAAGTTTT-AAAAAAGTATCGATCCTTTTTATA
1 ACACTGTT-AAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
5703 AAAAGTATGGACACTTTCAATATAATAGGTAAAC-TATGATGTAATAGGTAGCCCTTATATAATG
65 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
5767 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
130 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
5832 -AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
195 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
5896 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
260 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
5961 ATTAAATTAAAAATTCTAAATAATA-TTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
325 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
6025 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
390 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
6066 ACACTGTTAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATAA
1 ACACTGTTAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATAA
6131 AAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCC-T-TATAATGT
66 AAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGT
6194 AATAGGTATCGTTTATA-AATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATA
131 AATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATA
6258 AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTA
196 AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTA
6323 AGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTA
261 AGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTA
6388 TTAAATTAAAAATTCTAAATAATATTTTATAAAATA-AAAAAC-ATCAAATAATTTTTTGTGCAA
326 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCAA
6451 ATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
391 ATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
6491 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
1 ACACTGTT-AAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
*
6556 AAAAGTATGGACACTTTCAATATAATATGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
65 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
*
6621 TAATAGATATCGTTTATATAATGTAATAGGTA
130 TAATAGGTATCGTTTATATAATGTAATAGGTA
6653 TCTATCTCGC
Statistics
Matches: 1415, Mismatches: 5, Indels: 30
0.98 0.00 0.02
Matches are distributed among these distances:
421 23 0.02
422 113 0.08
423 178 0.13
424 87 0.06
425 206 0.15
426 586 0.41
427 165 0.12
428 44 0.03
429 13 0.01
ACGTcount: A:0.40, C:0.08, G:0.13, T:0.39
Consensus pattern (430 bp):
ACACTGTTAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATAA
AAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGT
AATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATA
AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTA
AGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTA
TTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCAA
ATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
Found at i:6195 original size:21 final size:22
Alignment explanation
Indices: 6169--6223 Score: 76
Period size: 21 Copynumber: 2.5 Consensus size: 22
6159 TAAACATATG
6169 ATGTAATAGGTAGCCCTTAT-A
1 ATGTAATAGGTAGCCCTTATAA
* **
6190 ATGTAATAGGTATCGTTTATAA
1 ATGTAATAGGTAGCCCTTATAA
6212 ATGTAATAGGTA
1 ATGTAATAGGTA
6224 ATGGTTATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 17 0.57
22 13 0.43
ACGTcount: A:0.36, C:0.07, G:0.20, T:0.36
Consensus pattern (22 bp):
ATGTAATAGGTAGCCCTTATAA
Found at i:6231 original size:22 final size:22
Alignment explanation
Indices: 6169--6232 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
6159 TAAACATATG
* **
6169 ATGTAATAGGTAGCCCTTAT-A
1 ATGTAATAGGTATCGGTTATAA
*
6190 ATGTAATAGGTATCGTTTATAA
1 ATGTAATAGGTATCGGTTATAA
6212 ATGTAATAGGTAAT-GGTTATA
1 ATGTAATAGGT-ATCGGTTATA
6233 TTGTAAAGTG
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
21 17 0.46
22 18 0.49
23 2 0.05
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (22 bp):
ATGTAATAGGTATCGGTTATAA
Found at i:6654 original size:23 final size:23
Alignment explanation
Indices: 6590--6654 Score: 85
Period size: 23 Copynumber: 2.8 Consensus size: 23
6580 ATATGTAAAC
* *
6590 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTATCCCTT
* **
6613 ATATAATGTAATAGATATCGTTT
1 ATATAATGTAATAGGTATCCCTT
6636 ATATAATGTAATAGGTATC
1 ATATAATGTAATAGGTATC
6655 TATCTCGCAT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTATCCCTT
Found at i:6879 original size:18 final size:18
Alignment explanation
Indices: 6858--6894 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
6848 GTAATTGGAG
6858 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
6876 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
6894 T
1 T
6895 ATATTTCGGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:17312 original size:2 final size:2
Alignment explanation
Indices: 17305--17336 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
17295 TTTTAAAATA
17305 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
17337 TAAGCCCATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:21722 original size:23 final size:23
Alignment explanation
Indices: 21693--21739 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 23
21683 ATCATCTTAG
21693 ATTATTTA-AAAATAAATATTTAT
1 ATTATTTATAAAA-AAATATTTAT
21716 ATTATTTATAAAAAAATATTTAT
1 ATTATTTATAAAAAAATATTTAT
21739 A
1 A
21740 AATCATTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 19 0.83
24 4 0.17
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (23 bp):
ATTATTTATAAAAAAATATTTAT
Found at i:22989 original size:22 final size:22
Alignment explanation
Indices: 22961--23005 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
22951 ATTATCTTAG
22961 ATTATTTA-AAAATAAATATTAT
1 ATTATTTATAAAATAAAT-TTAT
*
22983 ATTATTTATAAAATATATTTAT
1 ATTATTTATAAAATAAATTTAT
23005 A
1 A
23006 ATCATTTGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 13 0.62
23 8 0.38
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
ATTATTTATAAAATAAATTTAT
Found at i:23012 original size:23 final size:22
Alignment explanation
Indices: 22964--23012 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
22954 ATCTTAGATT
*
22964 ATTTAAAAATAAATATTATATT
1 ATTTAAAAATAAATATTATATC
*
22986 ATTTATAAAATATAT-TTATAATC
1 ATTTA-AAAATAAATATTAT-ATC
23009 ATTT
1 ATTT
23013 GATATTTGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (22 bp):
ATTTAAAAATAAATATTATATC
Found at i:23753 original size:6 final size:6
Alignment explanation
Indices: 23742--23787 Score: 92
Period size: 6 Copynumber: 7.7 Consensus size: 6
23732 CACAATACAC
23742 AGCCAT AGCCAT AGCCAT AGCCAT AGCCAT AGCCAT AGCCAT AGCC
1 AGCCAT AGCCAT AGCCAT AGCCAT AGCCAT AGCCAT AGCCAT AGCC
23788 TCGAAAGCCT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.33, C:0.35, G:0.17, T:0.15
Consensus pattern (6 bp):
AGCCAT
Found at i:25582 original size:2 final size:2
Alignment explanation
Indices: 25575--25610 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
25565 GGAAATTTTC
25575 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25611 TTTAAACATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:29701 original size:16 final size:15
Alignment explanation
Indices: 29680--29710 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
29670 ATAAAAAAGG
29680 AATAAAATCAAATAAA
1 AATAAAAT-AAATAAA
29696 AATAAAATAAATAAA
1 AATAAAATAAATAAA
29711 TAAATAAGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.19
Consensus pattern (15 bp):
AATAAAATAAATAAA
Found at i:31219 original size:7 final size:7
Alignment explanation
Indices: 31207--31268 Score: 96
Period size: 7 Copynumber: 9.4 Consensus size: 7
31197 AATGGGGTTT
31207 ATAAAAA
1 ATAAAAA
31214 AT-AAAA
1 ATAAAAA
31220 AT-AAAA
1 ATAAAAA
31226 AT-AAAA
1 ATAAAAA
31232 AT-AAAA
1 ATAAAAA
31238 ATAAAAA
1 ATAAAAA
31245 ATAAAAA
1 ATAAAAA
31252 ATAAAAA
1 ATAAAAA
31259 ATAAAAA
1 ATAAAAA
31266 ATA
1 ATA
31269 TTAATAATAA
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
6 24 0.44
7 30 0.56
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (7 bp):
ATAAAAA
Found at i:31221 original size:6 final size:6
Alignment explanation
Indices: 31210--31265 Score: 85
Period size: 6 Copynumber: 8.8 Consensus size: 6
31200 GGGGTTTATA
31210 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAAT AAAAAAT AAAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT -AAAAAT -AAAAAT -AAAAAT
31261 AAAAA
1 AAAAA
31266 ATATTAATAA
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
6 29 0.59
7 20 0.41
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:31278 original size:3 final size:3
Alignment explanation
Indices: 31213--31319 Score: 72
Period size: 3 Copynumber: 38.3 Consensus size: 3
31203 GTTTATAAAA
* * * *
31213 AAT AAA AAT AAA AAT AAA AAT AAA AAT AA- AA- AAT AA- AA- AAT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
31256 AA- AAT AA- AA- AAT ATT AAT AAT AAT AAT AAT AAT AAT AGT AAT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
31302 AAAT AAT -AT AAT -AT AAT A
1 -AAT AAT AAT AAT AAT AAT A
31320 TTTTTGTAGA
Statistics
Matches: 85, Mismatches: 12, Indels: 14
0.77 0.11 0.13
Matches are distributed among these distances:
2 20 0.24
3 58 0.68
4 7 0.08
ACGTcount: A:0.74, C:0.00, G:0.01, T:0.25
Consensus pattern (3 bp):
AAT
Found at i:31832 original size:32 final size:32
Alignment explanation
Indices: 31787--31904 Score: 96
Period size: 32 Copynumber: 3.6 Consensus size: 32
31777 GGGTACGATA
31787 TCATTCGTCGTGAAGTTGAAATCGTAGATGGC
1 TCATTCGTCGTGAAGTTGAAATCGTAGATGGC
* ** * *
31819 TCATTCGTTGTGAAGTTGAGCCTTGAATTAGAT--A
1 TCATTCGTCGTGAAGTTGA-AATCG---TAGATGGC
* * * *
31853 TCCTTCATCGTGAAATTGAAATCGTGGATGGC
1 TCATTCGTCGTGAAGTTGAAATCGTAGATGGC
*
31885 TCATTCGTTGTGAAGTTGAA
1 TCATTCGTCGTGAAGTTGAA
31905 CCTTGAATTA
Statistics
Matches: 62, Mismatches: 18, Indels: 12
0.67 0.20 0.13
Matches are distributed among these distances:
30 4 0.06
32 34 0.55
33 4 0.06
34 15 0.24
36 5 0.08
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.35
Consensus pattern (32 bp):
TCATTCGTCGTGAAGTTGAAATCGTAGATGGC
Found at i:31889 original size:66 final size:66
Alignment explanation
Indices: 31783--31941 Score: 273
Period size: 66 Copynumber: 2.4 Consensus size: 66
31773 TTTTGGGTAC
* * *
31783 GATATCATTCGTCGTGAAGTTGAAATCGTAGATGGCTCATTCGTTGTGAAGTTGAGCCTTGAATT
1 GATATCCTTCGTCGTGAAATTGAAATCGTAGATGGCTCATTCGTTGTGAAGTTGAACCTTGAATT
31848 A
66 A
* *
31849 GATATCCTTCATCGTGAAATTGAAATCGTGGATGGCTCATTCGTTGTGAAGTTGAACCTTGAATT
1 GATATCCTTCGTCGTGAAATTGAAATCGTAGATGGCTCATTCGTTGTGAAGTTGAACCTTGAATT
31914 A
66 A
31915 GATATCCTTCGTCGTGAAATTGAAATC
1 GATATCCTTCGTCGTGAAATTGAAATC
31942 CAATCTAGAG
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 87 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (66 bp):
GATATCCTTCGTCGTGAAATTGAAATCGTAGATGGCTCATTCGTTGTGAAGTTGAACCTTGAATT
A
Found at i:32331 original size:124 final size:124
Alignment explanation
Indices: 31854--32332 Score: 626
Period size: 124 Copynumber: 3.9 Consensus size: 124
31844 AATTAGATAT
* * *
31854 CCTTCATCGTGAAATTGAAATCGTGGATGGCTCATTCGTTGTGAAGTTGAA-CCTTGAATTAGAT
1 CCTTCATCGTGAAATTGAAACCGTGGATGGCCCATTCGTTGTGAAGTT-AAGCCTTGAATTGGAT
* * * * * * *
31918 ATCCTTCGTCGTGAAATTGAAATCCAATCTAGAGGTGGATG-CAGCTT-GTGGGCACGATAT-
65 ATCCTTCATCGTGAAGTTGAAATCCAATCTAAAGATGAATGTTA--TTGGTGAGCACGAT-TC
* * * * * *
31978 CTTTCGTTGTGAAGTTGAAACCGTGGATGACCCATTCGTTGTGAAGTTGAGCCTTGAATTGGATA
1 CCTTCATCGTGAAATTGAAACCGTGGATGGCCCATTCGTTGTGAAGTTAAGCCTTGAATTGGATA
* * * * *
32043 TCATTCGTCGTGAAGTTGAAACCCAAGT-TAAAGATGAATATTACTGGTGAGCACGATTC
66 TCCTTCATCGTGAAGTTGAAATCCAA-TCTAAAGATGAATGTTATTGGTGAGCACGATTC
* *
32102 CCTTCGTCGTGAAATTGAAACCGTGGATGGCCCATTCGTTGTGAAGTTGAGCCTTGAATTGGATA
1 CCTTCATCGTGAAATTGAAACCGTGGATGGCCCATTCGTTGTGAAGTTAAGCCTTGAATTGGATA
* *
32167 TCCTTCATCGTGAAGTTAAAATCCAATCTAAAGATGAATGTTTTTGGTGAGCACGATTC
66 TCCTTCATCGTGAAGTTGAAATCCAATCTAAAGATGAATGTTATTGGTGAGCACGATTC
* *
32226 CCTTCATCGTGAAGTCGAAACCGTGGATGGCCCATTCGTTGTGAAGTTAAGCCTTGAATTGGATA
1 CCTTCATCGTGAAATTGAAACCGTGGATGGCCCATTCGTTGTGAAGTTAAGCCTTGAATTGGATA
*
32291 TCCTTCATCGTGAAGTTGAAATCCAATCTAAATATGAATGTT
66 TCCTTCATCGTGAAGTTGAAATCCAATCTAAAGATGAATGTT
32333 GCTTCGAGTC
Statistics
Matches: 313, Mismatches: 36, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
123 4 0.01
124 307 0.98
125 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (124 bp):
CCTTCATCGTGAAATTGAAACCGTGGATGGCCCATTCGTTGTGAAGTTAAGCCTTGAATTGGATA
TCCTTCATCGTGAAGTTGAAATCCAATCTAAAGATGAATGTTATTGGTGAGCACGATTC
Found at i:32440 original size:34 final size:34
Alignment explanation
Indices: 32395--32612 Score: 216
Period size: 34 Copynumber: 6.5 Consensus size: 34
32385 CTGGGAAGCC
*
32395 CCTTCGCCGTGAAGTTGAGCTTTGAATTGGATAT
1 CCTTCGTCGTGAAGTTGAGCTTTGAATTGGATAT
* ** * **
32429 CCTTCGTCGTGAAGTTGAAACCATGGA-TGG--CC
1 CCTTCGTCGTGAAGTTG-AGCTTTGAATTGGATAT
* * * * *
32461 CCTTCGTTGTGAAGTTGAAACTGTGGA-TGG---C
1 CCTTCGTCGTGAAGTTG-AGCTTTGAATTGGATAT
* * * *
32492 CCATTCGTTGTGAAGTTGAGCCTTGACTTGAATAT
1 CC-TTCGTCGTGAAGTTGAGCTTTGAATTGGATAT
32527 CCTTCGTCGTGAAGTTGAGCTTTGAATTGGATAT
1 CCTTCGTCGTGAAGTTGAGCTTTGAATTGGATAT
32561 CCTTCGTCGTGAAGTTGAGCTTTGAATTGGATAT
1 CCTTCGTCGTGAAGTTGAGCTTTGAATTGGATAT
32595 CCTTCGTCGTGAAGTTGA
1 CCTTCGTCGTGAAGTTGA
32613 AATCCAATTT
Statistics
Matches: 157, Mismatches: 21, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
31 7 0.04
32 44 0.28
34 99 0.63
35 7 0.04
ACGTcount: A:0.21, C:0.18, G:0.27, T:0.34
Consensus pattern (34 bp):
CCTTCGTCGTGAAGTTGAGCTTTGAATTGGATAT
Found at i:32473 original size:32 final size:32
Alignment explanation
Indices: 32429--32510 Score: 128
Period size: 32 Copynumber: 2.6 Consensus size: 32
32419 AATTGGATAT
*
32429 CCTTCGTCGTGAAGTTGAAACCATGGATGGCC
1 CCTTCGTTGTGAAGTTGAAACCATGGATGGCC
**
32461 CCTTCGTTGTGAAGTTGAAACTGTGGATGGCC
1 CCTTCGTTGTGAAGTTGAAACCATGGATGGCC
*
32493 CATTCGTTGTGAAGTTGA
1 CCTTCGTTGTGAAGTTGA
32511 GCCTTGACTT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 46 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (32 bp):
CCTTCGTTGTGAAGTTGAAACCATGGATGGCC
Found at i:32592 original size:166 final size:172
Alignment explanation
Indices: 32395--32721 Score: 463
Period size: 166 Copynumber: 1.9 Consensus size: 172
32385 CTGGGAAGCC
32395 CCTTCGCCGTGAAGTTGAGCTTTGAATTGGATATCCTTCGTCGTGAAGTTGAAA-CC-A-T-G-G
1 CCTTCGCCGTGAAGTTGAGCTTTGAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAATTAGAG
* * *
32455 ATGGC-C-CCTTCGTTGTGAAGTTGAAA-CTGTGGATGGCCCATTCGTTGTGAAGTTGAGCCTTG
66 ATGGCACACCTTCGTCGTGAAGTTGAAATC-GTGGATGACCC-TTCGTTATGAAGTTGAGCCTTG
*
32517 ACTTGAATATCCTTCGTCGTGAAGTTGAGCTTTGAATTGGATAT
129 ACATGAATATCCTTCGTCGTGAAGTTGAGCTTTGAATTGGATAT
*
32561 CCTTCGTCGTGAAGTTGAGCTTTGAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAATTTAGA
1 CCTTCGCCGTGAAGTTGAGCTTTGAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAA-TTAGA
* *
32626 GTTGGCACGATATCCTTCGTCGTGAAGTTGAAATCGTGGATGACCCTTTGTTATGAAGTTGAGCC
65 GATGGCAC---A-CCTTCGTCGTGAAGTTGAAATCGTGGATGACCCTTCGTTATGAAGTTGAGCC
*
32691 TTGACATGAATATCCTTCGTTGTGAAGTTGA
126 TTGACATGAATATCCTTCGTCGTGAAGTTGA
32722 AATCCAAGTA
Statistics
Matches: 140, Mismatches: 8, Indels: 15
0.86 0.05 0.09
Matches are distributed among these distances:
166 53 0.38
167 2 0.01
168 1 0.01
170 1 0.01
171 1 0.01
172 5 0.04
173 1 0.01
177 46 0.33
178 29 0.21
179 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.34
Consensus pattern (172 bp):
CCTTCGCCGTGAAGTTGAGCTTTGAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAATTAGAG
ATGGCACACCTTCGTCGTGAAGTTGAAATCGTGGATGACCCTTCGTTATGAAGTTGAGCCTTGAC
ATGAATATCCTTCGTCGTGAAGTTGAGCTTTGAATTGGATAT
Found at i:35544 original size:20 final size:18
Alignment explanation
Indices: 35521--35563 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
35511 TGAATGAATG
35521 ATGAAAAAGATGAAAATAAA
1 ATGAAAAAGA-GAAAA-AAA
35541 ATG--AAAGAGAAAAAAA
1 ATGAAAAAGAGAAAAAAA
35557 ATGAAAA
1 ATGAAAA
35564 GAGTTAGTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
16 6 0.29
17 5 0.24
18 7 0.33
20 3 0.14
ACGTcount: A:0.72, C:0.00, G:0.16, T:0.12
Consensus pattern (18 bp):
ATGAAAAAGAGAAAAAAA
Found at i:35559 original size:16 final size:18
Alignment explanation
Indices: 35526--35562 Score: 60
Period size: 16 Copynumber: 2.2 Consensus size: 18
35516 GAATGATGAA
35526 AAAGATGAAAATAAAATG
1 AAAGATGAAAATAAAATG
35544 AAAGA-GAAAA-AAAATG
1 AAAGATGAAAATAAAATG
35560 AAA
1 AAA
35563 AGAGTTAGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.47
17 5 0.26
18 5 0.26
ACGTcount: A:0.73, C:0.00, G:0.16, T:0.11
Consensus pattern (18 bp):
AAAGATGAAAATAAAATG
Found at i:35564 original size:17 final size:18
Alignment explanation
Indices: 35525--35566 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
35515 TGAATGATGA
35525 AAAAGATGAAAATAAAATG
1 AAAAGA-GAAAATAAAATG
35544 -AAAGAGAAAA-AAAATG
1 AAAAGAGAAAATAAAATG
35560 AAAAGAG
1 AAAAGAG
35567 TTAGTGAGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 6 0.27
17 11 0.50
18 5 0.23
ACGTcount: A:0.71, C:0.00, G:0.19, T:0.10
Consensus pattern (18 bp):
AAAAGAGAAAATAAAATG
Found at i:36628 original size:10 final size:9
Alignment explanation
Indices: 36591--36672 Score: 51
Period size: 10 Copynumber: 8.7 Consensus size: 9
36581 TATTATATTG
*
36591 TAAAATATA
1 TAAAATAAA
36600 TAAATATAAA
1 TAAA-ATAAA
*
36610 AAAGGAATAAAA
1 TAA--AAT-AAA
*
36622 TCAAATAAA
1 TAAAATAAA
*
36631 AATAAATAAA
1 TA-AAATAAA
36641 T-AAATAAA
1 TAAAATAAA
*
36649 T-AAATAAG
1 TAAAATAAA
36657 TAAAGATAAA
1 TAAA-ATAAA
36667 TAAAAT
1 TAAAAT
36673 TAAGAACATT
Statistics
Matches: 57, Mismatches: 9, Indels: 14
0.71 0.11 0.17
Matches are distributed among these distances:
8 15 0.26
9 11 0.19
10 24 0.42
11 2 0.04
12 5 0.09
ACGTcount: A:0.71, C:0.01, G:0.05, T:0.23
Consensus pattern (9 bp):
TAAAATAAA
Found at i:36639 original size:4 final size:4
Alignment explanation
Indices: 36630--36670 Score: 55
Period size: 4 Copynumber: 9.8 Consensus size: 4
36620 AATCAAATAA
*
36630 AAAT AAAT AAAT AAAT AAAT AAAT AAGT AAAGAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT -AA-AT AAAT AAA
36671 ATTAAGAACA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
4 28 0.85
5 4 0.12
6 1 0.03
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:40581 original size:21 final size:21
Alignment explanation
Indices: 40555--40594 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
40545 CAGAACCCCA
*
40555 GGGGGGTATCGATTCCCCTGT
1 GGGGGGAATCGATTCCCCTGT
*
40576 GGGGGGAATCGGTTCCCCT
1 GGGGGGAATCGATTCCCCT
40595 TAAAAGGGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.25, G:0.40, T:0.25
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCCTGT
Found at i:40623 original size:21 final size:21
Alignment explanation
Indices: 40577--40638 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 21
40567 TTCCCCTGTG
*
40577 GGGGGAATCGGTTCCCCTTAAAA
1 GGGGGAATCGGTT-CCC-TCAAA
40600 GGGGGAATCGGTTCCCTCAAA
1 GGGGGAATCGGTTCCCTCAAA
* *
40621 GGGGGGATCGATTCCCTC
1 GGGGGAATCGGTTCCCTC
40639 TGCACCAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 20 0.56
22 3 0.08
23 13 0.36
ACGTcount: A:0.21, C:0.24, G:0.34, T:0.21
Consensus pattern (21 bp):
GGGGGAATCGGTTCCCTCAAA
Found at i:47400 original size:3 final size:3
Alignment explanation
Indices: 47394--47454 Score: 51
Period size: 3 Copynumber: 21.3 Consensus size: 3
47384 AAAATAAAAA
* *
47394 AAT AAT AA- AA- AAT AAA AAT AAT AAA AAT AAT AAT AAAT AAAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT -AAT AAT
47439 -AT AAT -AT AAT -AT AAT A
1 AAT AAT AAT AAT AAT AAT A
47455 TTTTTGTAGA
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
2 10 0.20
3 32 0.65
4 7 0.14
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:47409 original size:25 final size:26
Alignment explanation
Indices: 47381--47454 Score: 89
Period size: 25 Copynumber: 2.8 Consensus size: 26
47371 ATGAGGTCTG
47381 TAAAAAATAA-AAAAATAATAAAAAA
1 TAAAAAATAATAAAAATAATAAAAAA
*
47406 T-AAAAATAATAAAAATAATAATAAA
1 TAAAAAATAATAAAAATAATAAAAAA
*
47431 TAAATAATATAATATAATATAATA
1 TAAA-AA-ATAATA-AAAATAATA
47455 TTTTTGTAGA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
24 8 0.19
25 16 0.38
26 2 0.05
27 2 0.05
28 6 0.14
29 8 0.19
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (26 bp):
TAAAAAATAATAAAAATAATAAAAAA
Found at i:47410 original size:16 final size:16
Alignment explanation
Indices: 47381--47449 Score: 68
Period size: 16 Copynumber: 4.1 Consensus size: 16
47371 ATGAGGTCTG
47381 TAAAAAATAAAAAAATAA
1 TAAAAAAT--AAAAATAA
47399 TAAAAAATAAAAATAA
1 TAAAAAATAAAAATAA
*
47415 T-AAAAATAATAATAAA
1 TAAAAAATAAAAAT-AA
* *
47431 TAAATAATATAATATAA
1 TAAAAAATA-AAAATAA
47448 TA
1 TA
47450 TAATATTTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
15 11 0.25
16 12 0.27
17 10 0.23
18 11 0.25
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (16 bp):
TAAAAAATAAAAATAA
Found at i:47453 original size:5 final size:5
Alignment explanation
Indices: 47411--47455 Score: 51
Period size: 5 Copynumber: 9.4 Consensus size: 5
47401 AAAAATAAAA
*
47411 ATAAT A-AAA ATAAT AATAA- ATAA- ATAAT ATAAT ATAAT ATAAT AT
1 ATAAT ATAAT ATAAT -ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT AT
47456 TTTTGTAGAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
4 11 0.31
5 20 0.57
6 4 0.11
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (5 bp):
ATAAT
Found at i:54057 original size:4 final size:4
Alignment explanation
Indices: 54048--54083 Score: 65
Period size: 4 Copynumber: 9.2 Consensus size: 4
54038 CATCTGCCCC
54048 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGT- TGTA T
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA T
54084 ATGGTTATAG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 3 0.10
4 28 0.90
ACGTcount: A:0.22, C:0.00, G:0.25, T:0.53
Consensus pattern (4 bp):
TGTA
Found at i:56742 original size:20 final size:20
Alignment explanation
Indices: 56648--57016 Score: 458
Period size: 20 Copynumber: 18.4 Consensus size: 20
56638 GATTTTCCAT
* ** *
56648 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGTATCCGTA
* *
56668 AATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATC-CGTA
56688 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
56708 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
**
56728 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGTATCCGTA
*
56748 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
56768 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
56788 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* *
56808 AACCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
56828 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
56848 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
56868 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
56888 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
56908 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
56928 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
56948 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
56968 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
56988 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
57008 AATCACAAC
1 AATCGCAAC
57017 ACTGAAATTT
Statistics
Matches: 305, Mismatches: 36, Indels: 16
0.85 0.10 0.04
Matches are distributed among these distances:
19 3 0.01
20 299 0.98
21 3 0.01
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGTATCCGTA
Found at i:57728 original size:24 final size:24
Alignment explanation
Indices: 57689--57735 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
57679 AAATTTGGTC
57689 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
57713 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
57736 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:57927 original size:12 final size:12
Alignment explanation
Indices: 57910--57934 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
57900 ATATAATCCT
57910 GAAGAAGAAAAA
1 GAAGAAGAAAAA
57922 GAAGAAGAAAAA
1 GAAGAAGAAAAA
57934 G
1 G
57935 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:60260 original size:19 final size:19
Alignment explanation
Indices: 60238--60511 Score: 345
Period size: 19 Copynumber: 15.4 Consensus size: 19
60228 CGGAAAATAC
*
60238 AATCGCAACGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
60257 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
60271 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
*
60291 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
60305 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
60324 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
60343 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
60357 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
60376 AATCGCAATGCGAAATTAA
1 AATCGCAATGCGAAATGAA
*
60395 AATCGCAATACGAAATGAA
1 AATCGCAATGCGAAATGAA
60414 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
60433 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
60452 AATCGCAA--CGAAA-G--
1 AATCGCAATGCGAAATGAA
60466 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
60485 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
60504 AATCGCAA
1 AATCGCAA
60512 CGAGATAATC
Statistics
Matches: 224, Mismatches: 10, Indels: 42
0.81 0.04 0.15
Matches are distributed among these distances:
14 40 0.18
15 2 0.01
16 11 0.05
17 10 0.04
18 3 0.01
19 145 0.65
20 13 0.06
ACGTcount: A:0.47, C:0.18, G:0.20, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:60325 original size:33 final size:35
Alignment explanation
Indices: 60238--60533 Score: 282
Period size: 33 Copynumber: 8.5 Consensus size: 35
60228 CGGAAAATAC
* *
60238 AATCGCAACGCGAAATGAAAATCCCAAC--ATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGAATGAA
*
60271 AATCGCAATGCGGAAATGAAAATCGCAACG-A-GAG
1 AATCGCAATGC-GAAATGAAAATCGCAACGAATGAA
60305 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG-AATGAA
*
60343 AATCGCAA--CG--A-GAGAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG-AATGAA
*
60376 AATCGCAATGCGAAATTAAAATCGCAATACGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGC-A-ACG-AATGAA
60414 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG-AATGAA
60452 AATCGCAA--CGAAA-G--AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG-AATGAA
*
60485 AATCGCAATGCGAAATGAAAATCGCAACG-A-GAT
1 AATCGCAATGCGAAATGAAAATCGCAACGAATGAA
60518 AATCGCAATGCGAAAT
1 AATCGCAATGCGAAAT
60534 TATAAACGCA
Statistics
Matches: 233, Mismatches: 9, Indels: 42
0.82 0.03 0.15
Matches are distributed among these distances:
33 100 0.43
34 31 0.13
35 11 0.05
36 11 0.05
37 3 0.01
38 75 0.32
39 1 0.00
40 1 0.00
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.15
Consensus pattern (35 bp):
AATCGCAATGCGAAATGAAAATCGCAACGAATGAA
Found at i:60440 original size:109 final size:104
Alignment explanation
Indices: 60266--60533 Score: 446
Period size: 109 Copynumber: 2.5 Consensus size: 104
60256 AAATCCCAAC
*
60266 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCA
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAAAATCGCAATGCGAAATGAAAATCGCA
*
60331 ATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
65 ATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
*
60371 ATGAAAATCGCAATGCGAAATTAAAATCGCAATACGAAATGAAAATCGCAATGCGAAATGAAAAT
1 ATGAAAATCGCAATGCGAAATGAAAATCGC-A-ACG--A-GAAAATCGCAATGCGAAATGAAAAT
60436 CGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
61 CGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
*
60480 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGATAATCGCAATGCGAAAT
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAAAATCGCAATGCGAAAT
60534 TATAAACGCA
Statistics
Matches: 153, Mismatches: 5, Indels: 11
0.91 0.03 0.07
Matches are distributed among these distances:
104 31 0.20
105 18 0.12
106 3 0.02
107 3 0.02
108 2 0.01
109 96 0.63
ACGTcount: A:0.47, C:0.17, G:0.21, T:0.15
Consensus pattern (104 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAAAATCGCAATGCGAAATGAAAATCGCAA
TGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
Found at i:60549 original size:52 final size:52
Alignment explanation
Indices: 60266--60533 Score: 446
Period size: 52 Copynumber: 5.0 Consensus size: 52
60256 AAATCCCAAC
60266 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
60319 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
* *
60371 ATGAAAATCGCAATGCGAAATTAAAATCGCAATACGAAATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGC-A-ACG--A-GAGAATCGCAATGCGAA
*
60428 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
*
60480 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGATAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
60532 AT
1 AT
60534 TATAAACGCA
Statistics
Matches: 203, Mismatches: 7, Indels: 11
0.92 0.03 0.05
Matches are distributed among these distances:
52 132 0.65
53 18 0.09
54 3 0.01
55 3 0.01
56 2 0.01
57 45 0.22
ACGTcount: A:0.47, C:0.17, G:0.21, T:0.15
Consensus pattern (52 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
Found at i:60649 original size:19 final size:19
Alignment explanation
Indices: 60540--60641 Score: 142
Period size: 19 Copynumber: 5.6 Consensus size: 19
60530 AAATTATAAA
60540 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
60559 CCGCATTGCGATTTTCATTT
1 -CGCATTGCGATTTTCATTT
*
60579 CGCATTGCGA--TTC-TCT
1 CGCATTGCGATTTTCATTT
*
60595 CG--TTGTGATTTTCATTT
1 CGCATTGCGATTTTCATTT
60612 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
60631 CGCATTGCGAT
1 CGCATTGCGAT
60642 AGTCATTTTT
Statistics
Matches: 73, Mismatches: 4, Indels: 11
0.83 0.05 0.12
Matches are distributed among these distances:
14 5 0.07
16 7 0.10
17 7 0.10
19 35 0.48
20 19 0.26
ACGTcount: A:0.15, C:0.23, G:0.18, T:0.45
Consensus pattern (19 bp):
CGCATTGCGATTTTCATTT
Found at i:60767 original size:14 final size:14
Alignment explanation
Indices: 60748--60784 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
60738 CATCAATTAC
60748 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
60762 ACAAATCATCTTTT
1 ACAAATCAACTTTT
60776 ACAAATCAA
1 ACAAATCAA
60785 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:60796 original size:12 final size:12
Alignment explanation
Indices: 60779--60851 Score: 53
Period size: 12 Copynumber: 6.0 Consensus size: 12
60769 ATCTTTTACA
60779 AATCAATTAAAC
1 AATCAATTAAAC
*
60791 AATCAA--AAATTG
1 AATCAATTAAA--C
**
60803 AATCAACTTTTAC
1 AATCAA-TTAAAC
60816 AAATCAATTAAAC
1 A-ATCAATTAAAC
*
60829 AATCAA-AAAAC
1 AATCAATTAAAC
60840 AATCAATTAAAC
1 AATCAATTAAAC
60852 TATTGAATCA
Statistics
Matches: 46, Mismatches: 8, Indels: 14
0.68 0.12 0.21
Matches are distributed among these distances:
10 3 0.07
11 10 0.22
12 21 0.46
13 6 0.13
14 5 0.11
15 1 0.02
ACGTcount: A:0.58, C:0.16, G:0.01, T:0.25
Consensus pattern (12 bp):
AATCAATTAAAC
Found at i:60813 original size:38 final size:38
Alignment explanation
Indices: 60765--60837 Score: 137
Period size: 38 Copynumber: 1.9 Consensus size: 38
60755 AACTTTTACA
*
60765 AATCATCTTTTACAAATCAATTAAACAATCAAAAATTG
1 AATCAACTTTTACAAATCAATTAAACAATCAAAAATTG
60803 AATCAACTTTTACAAATCAATTAAACAATCAAAAA
1 AATCAACTTTTACAAATCAATTAAACAATCAAAAA
60838 ACAATCAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.53, C:0.16, G:0.01, T:0.29
Consensus pattern (38 bp):
AATCAACTTTTACAAATCAATTAAACAATCAAAAATTG
Found at i:62727 original size:14 final size:14
Alignment explanation
Indices: 62708--62764 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
62698 GCGAAATGAA
*
62708 AATCGCAACGACAG
1 AATCGCAACGAAAG
62722 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
62739 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
62755 AATCGCAACG
1 AATCGCAACG
62765 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:62735 original size:33 final size:33
Alignment explanation
Indices: 62689--62781 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
62679 GAGAAACCAA
*
62689 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
62722 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
62755 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
62782 TGCGATTTTG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.47, C:0.22, G:0.20, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:62746 original size:19 final size:19
Alignment explanation
Indices: 62652--62786 Score: 119
Period size: 19 Copynumber: 7.6 Consensus size: 19
62642 TAGTTTACTT
* *
62652 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
* **
62672 TCGCAACGAGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
62691 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
62710 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
62724 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
62743 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
62757 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
62776 TCGCAATGCGA
1 TCGCAACGCGA
62787 TTTTGGTTTC
Statistics
Matches: 95, Mismatches: 10, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 16 0.17
16 11 0.12
17 11 0.12
19 46 0.48
20 11 0.12
ACGTcount: A:0.47, C:0.23, G:0.19, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:62804 original size:19 final size:19
Alignment explanation
Indices: 62782--62910 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
62772 AAAATCGCAA
62782 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
62801 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
62815 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
62834 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
62848 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
62867 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
62886 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
62906 TGCGA
1 TGCGA
62911 AAGTAAACTA
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 22 0.24
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 48 0.53
20 13 0.14
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:62824 original size:33 final size:33
Alignment explanation
Indices: 62782--62873 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
62772 AAAATCGCAA
62782 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
62815 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
62848 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
62874 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 54 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.18, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:63124 original size:92 final size:93
Alignment explanation
Indices: 62954--63240 Score: 567
Period size: 93 Copynumber: 3.1 Consensus size: 93
62944 TTGAATGGAT
62954 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
63019 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
63047 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
63111 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
63139 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
63204 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
63232 AAATTTACT
1 AAATTTACT
63241 AAGCAATCTA
Statistics
Matches: 193, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
92 92 0.48
93 101 0.52
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (93 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:64982 original size:33 final size:33
Alignment explanation
Indices: 64937--65048 Score: 206
Period size: 33 Copynumber: 3.4 Consensus size: 33
64927 TCTTTTGGTT
64937 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
64970 GAGATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
65003 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
65036 GAAATGAAAATCG
1 GAAATGAAAATCG
65049 TAATGCGATT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 75 1.00
ACGTcount: A:0.45, C:0.21, G:0.25, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:64983 original size:19 final size:18
Alignment explanation
Indices: 64944--65044 Score: 82
Period size: 14 Copynumber: 6.2 Consensus size: 18
64934 GTTGAAATGA
64944 AAATCGCAA--CGAGA-G
1 AAATCGCAACGCGAGATG
64959 -AATCGCAACGCGAGATG
1 AAATCGCAACGCGAGATG
64976 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
64992 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
65009 AAAATCGCAA--CGAGA-G
1 -AAATCGCAACGCGAGATG
*
65025 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
65042 AAA
1 AAA
65045 ATCGTAATGC
Statistics
Matches: 69, Mismatches: 3, Indels: 25
0.71 0.03 0.26
Matches are distributed among these distances:
14 24 0.35
16 15 0.22
17 12 0.17
18 2 0.03
19 16 0.23
ACGTcount: A:0.45, C:0.22, G:0.25, T:0.09
Consensus pattern (18 bp):
AAATCGCAACGCGAGATG
Found at i:65087 original size:14 final size:14
Alignment explanation
Indices: 65068--65122 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
65058 TTTGGTTTCG
65068 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
65082 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
65101 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
65115 CGTTGCGA
1 CGTTGCGA
65123 CAGTCATTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
16 3 0.09
17 3 0.09
19 10 0.29
ACGTcount: A:0.09, C:0.25, G:0.24, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:65100 original size:33 final size:33
Alignment explanation
Indices: 65052--65122 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
65042 AAAATCGTAA
**
65052 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
65085 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
65118 TGCGA
1 TGCGA
65123 CAGTCATTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.08, C:0.23, G:0.25, T:0.44
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:65130 original size:33 final size:33
Alignment explanation
Indices: 65063--65144 Score: 119
Period size: 33 Copynumber: 2.5 Consensus size: 33
65053 GCGATTTTGG
***
65063 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
65096 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
*
65129 TTCTCTCGTTGCGATT
1 TT-TCGCGTTGCGATT
65145 TTCATTTATC
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
33 32 0.73
34 12 0.27
ACGTcount: A:0.10, C:0.26, G:0.22, T:0.43
Consensus pattern (33 bp):
TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
Found at i:65149 original size:20 final size:20
Alignment explanation
Indices: 65075--65163 Score: 75
Period size: 20 Copynumber: 4.8 Consensus size: 20
65065 TCGCGTTGCG
65075 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
65095 ATT-TCGCGTTGCG------
1 ATTCTCTCGTTGCGATTTTC
***
65108 ATTCTCTCGTTGCGACAGTC
1 ATTCTCTCGTTGCGATTTTC
65128 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
65148 ATTTATCTCGTTGCGA
1 A-TTCTCTCGTTGCGA
65164 CTCTTCTGCA
Statistics
Matches: 55, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
13 3 0.05
14 9 0.16
19 9 0.16
20 21 0.38
21 13 0.24
ACGTcount: A:0.12, C:0.25, G:0.19, T:0.44
Consensus pattern (20 bp):
ATTCTCTCGTTGCGATTTTC
Found at i:65285 original size:33 final size:33
Alignment explanation
Indices: 65243--65313 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
65233 AATACTAACT
*
65243 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
65276 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
65309 TGAAA
1 TGAAA
65314 TCTAAGTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.48, C:0.18, G:0.23, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:65547 original size:22 final size:22
Alignment explanation
Indices: 65495--65549 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
65485 TGGTTGTGAG
**
65495 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
65517 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
65539 GGATTTCTTCG
1 GGATTTCTTCG
65550 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:65863 original size:40 final size:40
Alignment explanation
Indices: 65695--65889 Score: 212
Period size: 40 Copynumber: 4.8 Consensus size: 40
65685 GCTTTAAATA
* *
65695 TCGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTAT
1 TCGCGTTGCGATTTACGGATACGCGTTGCGA-TTTACGGAT
** *
65736 TATCGTTGCGATTTACGGATACGCGTTGCGATATACGGAT
1 TCGCGTTGCGATTTACGGATACGCGTTGCGATTTACGGAT
* * **
65776 ACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGAT
1 TCGCGTTGCGATTTACGGATACGCGTTGCGATTTACGGAT
* * *
65816 ACACGTTGCGATTTACGGATACGCGTTGCGATTTATGTG-T
1 TCGCGTTGCGATTTACGGATACGCGTTGCGATTTACG-GAT
* * ** *
65856 TCGCGTTGCAATTTTCATATTCGCGTTGCGATTT
1 TCGCGTTGCGATTTACGGATACGCGTTGCGATTT
65890 TTGAAAATCG
Statistics
Matches: 129, Mismatches: 24, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
40 99 0.77
41 30 0.23
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.36
Consensus pattern (40 bp):
TCGCGTTGCGATTTACGGATACGCGTTGCGATTTACGGAT
Found at i:65864 original size:20 final size:20
Alignment explanation
Indices: 65696--65850 Score: 213
Period size: 20 Copynumber: 7.7 Consensus size: 20
65686 CTTTAAATAT
65696 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
65716 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
65738 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
65757 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
65777 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
65797 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
65817 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
65837 CGCGTTGCGATTTA
1 CGCGTTGCGATTTA
65851 TGTGTTCGCG
Statistics
Matches: 116, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
19 2 0.02
20 98 0.84
21 14 0.12
22 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.26, T:0.33
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:65883 original size:60 final size:60
Alignment explanation
Indices: 65696--65889 Score: 244
Period size: 60 Copynumber: 3.2 Consensus size: 60
65686 CTTTAAATAT
**
65696 CGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATA
* * *** *
65757 CGCGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
* * * * ** *
65817 CACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCAATTTTCATATT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
65877 CGCGTTGCGATTT
1 CGCGTTGCGATTT
65890 TTGAAAATCG
Statistics
Matches: 111, Mismatches: 22, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
60 83 0.75
61 28 0.25
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.36
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
Found at i:65900 original size:21 final size:20
Alignment explanation
Indices: 65876--65954 Score: 59
Period size: 21 Copynumber: 3.8 Consensus size: 20
65866 ATTTTCATAT
*
65876 TCGCGTTGCGATTTTTGAAAA
1 TCGCATTGCGA-TTTTGAAAA
* * **
65897 TCGCAATGCGAATTTGTACTA
1 TCGCATTGCGATTTTG-AAAA
* *
65918 TCGCATCGCGATTTTCAAGAA
1 TCGCATTGCGATTTTGAA-AA
*
65939 TCGCGTTGCGATTTTG
1 TCGCATTGCGATTTTG
65955 GAAACTGATT
Statistics
Matches: 42, Mismatches: 14, Indels: 4
0.70 0.23 0.07
Matches are distributed among these distances:
20 5 0.12
21 37 0.88
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (20 bp):
TCGCATTGCGATTTTGAAAA
Found at i:65969 original size:20 final size:20
Alignment explanation
Indices: 65944--65995 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
65934 AAGAATCGCG
*
65944 TTGCGATTTTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
65964 TTGCGATTCTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
65984 TTGCGATTCTGG
1 TTGCGATTCTGG
65996 GGATCGCGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.21, C:0.13, G:0.27, T:0.38
Consensus pattern (20 bp):
TTGCGATTCTGGAAACTGAT
Found at i:67560 original size:16 final size:16
Alignment explanation
Indices: 67539--67569 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67529 TAACATAGGA
*
67539 CTAGTTTTAATTAGTT
1 CTAGTTTGAATTAGTT
67555 CTAGTTTGAATTAGT
1 CTAGTTTGAATTAGT
67570 GATCGAGCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.06, G:0.16, T:0.52
Consensus pattern (16 bp):
CTAGTTTGAATTAGTT
Found at i:67655 original size:19 final size:19
Alignment explanation
Indices: 67632--67684 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 19
67622 ATCAAAAACA
**
67632 CAAAATTTTTCAATTTTTTT
1 CAAAA-TTTTCAAAATTTTT
*
67652 AAAAATTTTCAAAA-TTTT
1 CAAAATTTTCAAAATTTTT
67670 CAAAATTTTCAAAAT
1 CAAAATTTTCAAAAT
67685 GATTTTATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
18 17 0.61
19 7 0.25
20 4 0.14
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.47
Consensus pattern (19 bp):
CAAAATTTTCAAAATTTTT
Found at i:67660 original size:9 final size:9
Alignment explanation
Indices: 67648--67684 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
67638 TTTTCAATTT
*
67648 TTTTAAAAA
1 TTTTCAAAA
67657 TTTTCAAAA
1 TTTTCAAAA
67666 TTTTCAAAA
1 TTTTCAAAA
67675 TTTTCAAAA
1 TTTTCAAAA
67684 T
1 T
67685 GATTTTATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (9 bp):
TTTTCAAAA
Found at i:73648 original size:24 final size:24
Alignment explanation
Indices: 73621--73713 Score: 123
Period size: 24 Copynumber: 3.9 Consensus size: 24
73611 AATTCTGTTA
* *
73621 TGATATTTGACCTGGATTATGATT
1 TGATACTTGACATGGATTATGATT
* *
73645 TGATACTTGACATGGATTCTGATA
1 TGATACTTGACATGGATTATGATT
*
73669 TGATACTTGACATGGATTCTGATT
1 TGATACTTGACATGGATTATGATT
* *
73693 TGATACTTGACCTGAATTATG
1 TGATACTTGACATGGATTATG
73714 TTTTTATTTT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.27, C:0.12, G:0.20, T:0.41
Consensus pattern (24 bp):
TGATACTTGACATGGATTATGATT
Found at i:73664 original size:48 final size:48
Alignment explanation
Indices: 73612--73703 Score: 148
Period size: 48 Copynumber: 1.9 Consensus size: 48
73602 TCCGATTTGA
* * *
73612 ATTCTGTTATGATATTTGACCTGGATTATGATTTGATACTTGACATGG
1 ATTCTGATATGATACTTGACATGGATTATGATTTGATACTTGACATGG
*
73660 ATTCTGATATGATACTTGACATGGATTCTGATTTGATACTTGAC
1 ATTCTGATATGATACTTGACATGGATTATGATTTGATACTTGAC
73704 CTGAATTATG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.26, C:0.12, G:0.20, T:0.42
Consensus pattern (48 bp):
ATTCTGATATGATACTTGACATGGATTATGATTTGATACTTGACATGG
Found at i:74087 original size:29 final size:29
Alignment explanation
Indices: 74055--74117 Score: 117
Period size: 29 Copynumber: 2.2 Consensus size: 29
74045 GCTCAACATA
74055 AAAATCTGTAGATGTTTGGAACCAATAAG
1 AAAATCTGTAGATGTTTGGAACCAATAAG
74084 AAAATCTGTAGATGTTTGGAACCAATAAG
1 AAAATCTGTAGATGTTTGGAACCAATAAG
*
74113 GAAAT
1 AAAAT
74118 ATATGTTTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.43, C:0.10, G:0.21, T:0.27
Consensus pattern (29 bp):
AAAATCTGTAGATGTTTGGAACCAATAAG
Found at i:75075 original size:18 final size:18
Alignment explanation
Indices: 75031--75075 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
75021 AAAATAAATG
*
75031 TTAAACTT-TTTTAATAA
1 TTAAACTTATTTTAAAAA
75048 TTAATA-TTATTTTAAAAA
1 TTAA-ACTTATTTTAAAAA
75066 TTAAACTTAT
1 TTAAACTTAT
75076 ACGGATTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
17 7 0.29
18 17 0.71
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.51
Consensus pattern (18 bp):
TTAAACTTATTTTAAAAA
Found at i:77375 original size:21 final size:20
Alignment explanation
Indices: 77290--77446 Score: 84
Period size: 21 Copynumber: 7.8 Consensus size: 20
77280 AATGACCAAT
** *
77290 AAAATCGCAACGCGA-AATA
1 AAAATCGCAACGCGATTTTC
***
77309 AAAATCGCAACGCGATCCCC
1 AAAATCGCAACGCGATTTTC
* ** *
77329 AGAATCGCAAATC-AGTTTCC
1 AAAATCGCAACGCGA-TTTTC
*
77349 AAAATCGCAACGCGATTCTTG
1 AAAATCGCAACGCGATT-TTC
* * *
77370 AAAATCGCAATGCGATAGTAC
1 AAAATCGCAACGCGAT-TTTC
* **
77391 AAATTCGCATTGCGATTTTCC
1 AAAATCGCAACGCGATTTT-C
* * *
77412 AAAATCGCAACGCGAATATG
1 AAAATCGCAACGCGATTTTC
77432 AAAATCGCAACGCGA
1 AAAATCGCAACGCGA
77447 ACACATAAAT
Statistics
Matches: 104, Mismatches: 28, Indels: 11
0.73 0.20 0.08
Matches are distributed among these distances:
19 16 0.15
20 41 0.39
21 47 0.45
ACGTcount: A:0.39, C:0.25, G:0.17, T:0.19
Consensus pattern (20 bp):
AAAATCGCAACGCGATTTTC
Found at i:77475 original size:20 final size:20
Alignment explanation
Indices: 77413--77657 Score: 246
Period size: 20 Copynumber: 12.2 Consensus size: 20
77403 CGATTTTCCA
* ** *
77413 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGTATCCGT
* *
77433 AAATCGCAACGCG-AACACAT
1 AAATCGCAACGCGTATC-CGT
77453 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
77473 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
**
77493 AAATCGCAACGCGTATGGGT
1 AAATCGCAACGCGTATCCGT
*
77513 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
77533 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
77553 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
* * *
77573 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGTATCCGT
*
77593 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
*
77613 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
* * *
77633 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGTATCCGT
77653 AAATC
1 AAATC
77658 CGGTAGGGCA
Statistics
Matches: 192, Mismatches: 27, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
19 2 0.01
20 188 0.98
21 2 0.01
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.20
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:78408 original size:24 final size:24
Alignment explanation
Indices: 78369--78415 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
78359 AAATTTGGTC
78369 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
78393 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
78416 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:81022 original size:19 final size:19
Alignment explanation
Indices: 80931--81171 Score: 279
Period size: 19 Copynumber: 13.7 Consensus size: 19
80921 GCAACGAGAG
80931 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
80950 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
*
80964 AATCGCAATGCGGAAATAAA
1 AATCGCAATGC-GAAATGAA
*
80984 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
80998 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
81017 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
81036 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
81055 AATCGCAA--CG--AT-AG
1 AATCGCAATGCGAAATGAA
81069 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
81088 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
81107 AATCGCAA--CG--A-GAT
1 AATCGCAATGCGAAATGAA
81121 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
81140 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
81159 AATCGCATTGCGA
1 AATCGCAATGCGA
81172 TTCTCTCGTT
Statistics
Matches: 190, Mismatches: 11, Indels: 42
0.78 0.05 0.17
Matches are distributed among these distances:
14 40 0.21
15 4 0.02
16 7 0.04
17 6 0.03
18 5 0.03
19 116 0.61
20 12 0.06
ACGTcount: A:0.46, C:0.18, G:0.21, T:0.15
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:81073 original size:52 final size:51
Alignment explanation
Indices: 80931--81165 Score: 305
Period size: 52 Copynumber: 4.5 Consensus size: 51
80921 GCAACGAGAG
* *
80931 AATCGCAATGCGAAATGAAAATCCCAAC-ATGAAAATCGCAATGCGGAAATAAA
1 AATCGCAATGCGAAATGAAAATCGCAACGAT--AAATCGCAATGC-GAAATGAA
* * * * *
80984 AATCGCAACGAGAGAATCG-CAATGCGAAATGA-AAATCGCAATGCGAAATGAA
1 AATCGCAATGCGA-AAT-GAAAAT-CGCAACGATAAATCGCAATGCGAAATGAA
81036 AATCGCAATGCGAAATGAAAATCGCAACGATAGAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGATA-AATCGCAATGCGAAATGAA
*
81088 AATCGCAATGCGAAATGAAAATCGCAACGAGATAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGATA-AATCGCAATGCGAAATGAA
81140 AATCGCAATGCGAAATGAAAATCGCA
1 AATCGCAATGCGAAATGAAAATCGCA
81166 TTGCGATTCT
Statistics
Matches: 161, Mismatches: 14, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
50 7 0.04
51 7 0.04
52 113 0.70
53 23 0.14
54 6 0.04
55 4 0.02
56 1 0.01
ACGTcount: A:0.47, C:0.18, G:0.20, T:0.15
Consensus pattern (51 bp):
AATCGCAATGCGAAATGAAAATCGCAACGATAAATCGCAATGCGAAATGAA
Found at i:81085 original size:71 final size:71
Alignment explanation
Indices: 80917--81171 Score: 337
Period size: 71 Copynumber: 3.6 Consensus size: 71
80907 CGGAAATTAC
*
80917 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCCCAA--C---ATGAAAATCGCAATGCGG
1 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGC-G
*
80977 AAATAAA
65 AAATGAA
80984 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGA
1 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGA
81049 AATGAA
66 AATGAA
* * *
81055 AATCGCAACGATAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGA
1 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGA
*
81120 TAATCG-C
66 -AAT-GAA
* * *
81127 AATGCGAAATGA-A-AATCGCAATGCGAAATGAAAATCGCATTGCGA
1 AAT-CGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGA
81172 TTCTCTCGTT
Statistics
Matches: 171, Mismatches: 9, Indels: 12
0.89 0.05 0.06
Matches are distributed among these distances:
67 40 0.23
69 1 0.01
71 100 0.58
72 23 0.13
73 7 0.04
ACGTcount: A:0.46, C:0.18, G:0.21, T:0.15
Consensus pattern (71 bp):
AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGA
AATGAA
Found at i:81274 original size:52 final size:53
Alignment explanation
Indices: 81161--81277 Score: 218
Period size: 53 Copynumber: 2.2 Consensus size: 53
81151 GAAATGAAAA
81161 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
*
81214 TCGCATTGCGATTCTCTCGTTGCGATTTTTATTT-CGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
81266 TCGCATTGCGAT
1 TCGCATTGCGAT
81278 AGTCATTTTT
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
52 30 0.48
53 33 0.52
ACGTcount: A:0.14, C:0.23, G:0.18, T:0.45
Consensus pattern (53 bp):
TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
Found at i:81285 original size:19 final size:19
Alignment explanation
Indices: 81180--81277 Score: 134
Period size: 19 Copynumber: 5.4 Consensus size: 19
81170 GATTCTCTCG
81180 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
81200 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
81219 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
*
81233 TTGCGATTTTTATTTCGCA
1 TTGCGATTTTCATTTCGCA
81252 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
81271 TTGCGAT
1 TTGCGAT
81278 AGTCATTTTT
Statistics
Matches: 69, Mismatches: 4, Indels: 11
0.82 0.05 0.13
Matches are distributed among these distances:
14 6 0.09
16 6 0.09
17 7 0.10
19 35 0.51
20 15 0.22
ACGTcount: A:0.14, C:0.21, G:0.17, T:0.47
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:81403 original size:14 final size:14
Alignment explanation
Indices: 81384--81420 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
81374 CATCAATTAC
81384 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
81398 ACAAATCATCTTTT
1 ACAAATCAACTTTT
81412 ACAAATCAA
1 ACAAATCAA
81421 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:81580 original size:19 final size:19
Alignment explanation
Indices: 81553--81656 Score: 110
Period size: 19 Copynumber: 5.7 Consensus size: 19
81543 CATACATCAT
*
81553 TTTCACGTTGCGATTTTGG
1 TTTCGCGTTGCGATTTTGG
*
81572 TTTCGCGTTGCGA--TT-C
1 TTTCGCGTTGCGATTTTGG
**
81588 TTT--CGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTGG
81605 TTTCGCGTTGCGATTTTGG
1 TTTCGCGTTGCGATTTTGG
*
81624 TTTCGCGTTGCGATTTTAAG
1 TTTCGCGTTGCGATTTT-GG
*
81644 TTTCGTGTTGCGA
1 TTTCGCGTTGCGA
81657 AAGTAAACTA
Statistics
Matches: 72, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
14 8 0.11
16 5 0.07
17 5 0.07
19 41 0.57
20 13 0.18
ACGTcount: A:0.10, C:0.17, G:0.26, T:0.47
Consensus pattern (19 bp):
TTTCGCGTTGCGATTTTGG
Found at i:81840 original size:93 final size:93
Alignment explanation
Indices: 81704--82079 Score: 736
Period size: 93 Copynumber: 4.1 Consensus size: 93
81694 ATGGATTGCA
*
81704 TTAC-TTCAACCAATAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
81768 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
81796 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
81861 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
81889 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
81954 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
81982 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
82047 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
82075 TTACT
1 TTACT
82080 AAGCAATCTA
Statistics
Matches: 282, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
92 4 0.01
93 278 0.99
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (93 bp):
TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
TAGCAGAATTGGCAGCAACCGAACAAAT
Found at i:83803 original size:14 final size:14
Alignment explanation
Indices: 83784--83873 Score: 72
Period size: 14 Copynumber: 5.7 Consensus size: 14
83774 TTGAAATGAA
83784 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
83798 AATCGCAACGCGAAATGAC
1 AATCGCAA--CG--A-GAG
83817 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
83831 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
83850 AATCGCAACGAGAG
1 AATCGCAACGAGAG
83864 AATCGCAACG
1 AATCGCAACG
83874 CGAAATGAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 20
0.72 0.05 0.23
Matches are distributed among these distances:
14 30 0.48
15 2 0.03
16 4 0.06
17 4 0.06
18 2 0.03
19 20 0.32
ACGTcount: A:0.43, C:0.23, G:0.24, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:83821 original size:33 final size:33
Alignment explanation
Indices: 83776--83890 Score: 221
Period size: 33 Copynumber: 3.5 Consensus size: 33
83766 TCTTTGGGTT
83776 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
*
83809 GAAATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
83842 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
83875 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
83891 TGCGATTTGG
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 80 1.00
ACGTcount: A:0.46, C:0.21, G:0.23, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:83822 original size:19 final size:19
Alignment explanation
Indices: 83798--83895 Score: 90
Period size: 19 Copynumber: 5.7 Consensus size: 19
83788 GCAACGAGAG
*
83798 AATCGCAACGCGAAATGAC
1 AATCGCAACGCGAAATGAA
*
83817 AATCGCAA--CG--A-GAG
1 AATCGCAACGCGAAATGAA
83831 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
83850 AATCGCAA--CG--A-GAG
1 AATCGCAACGCGAAATGAA
83864 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
83883 AATCGCAATGCGA
1 AATCGCAACGCGA
83896 TTTGGTTTCG
Statistics
Matches: 64, Mismatches: 5, Indels: 20
0.72 0.06 0.22
Matches are distributed among these distances:
14 20 0.31
15 2 0.03
16 4 0.06
17 4 0.06
18 2 0.03
19 32 0.50
ACGTcount: A:0.44, C:0.22, G:0.23, T:0.10
Consensus pattern (19 bp):
AATCGCAACGCGAAATGAA
Found at i:83925 original size:14 final size:14
Alignment explanation
Indices: 83906--83962 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
83896 TTTGGTTTCG
83906 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
83920 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
83939 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
83953 CGTTGCGATT
1 CGTTGCGATT
83963 TTCATTTCTC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
16 3 0.08
17 3 0.08
19 10 0.28
ACGTcount: A:0.09, C:0.25, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:83941 original size:33 final size:33
Alignment explanation
Indices: 83901--83970 Score: 140
Period size: 33 Copynumber: 2.1 Consensus size: 33
83891 TGCGATTTGG
83901 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
83934 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
83967 TTTC
1 TTTC
83971 TCTCGTTGCG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.09, C:0.24, G:0.20, T:0.47
Consensus pattern (33 bp):
TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
Found at i:83993 original size:20 final size:20
Alignment explanation
Indices: 83946--84002 Score: 78
Period size: 21 Copynumber: 2.8 Consensus size: 20
83936 TCGCGTTGCG
***
83946 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGACAGTC
83966 ATTTCTCTCGTTGCGACAGTC
1 A-TTCTCTCGTTGCGACAGTC
83987 ATTCTCTCGTTGCGAC
1 ATTCTCTCGTTGCGAC
84003 TCTTCTGCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
20 16 0.48
21 17 0.52
ACGTcount: A:0.12, C:0.28, G:0.18, T:0.42
Consensus pattern (20 bp):
ATTCTCTCGTTGCGACAGTC
Found at i:84352 original size:22 final size:22
Alignment explanation
Indices: 84298--84352 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
84288 TGGTTGTGAG
**
84298 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
** *
84320 GGAAATATTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
84342 GGATTTCTTCG
1 GGATTTCTTCG
84353 CCGTAGAGAG
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.22, C:0.15, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:84526 original size:20 final size:20
Alignment explanation
Indices: 84499--84691 Score: 228
Period size: 20 Copynumber: 9.7 Consensus size: 20
84489 CTTTAAATAT
*
84499 CGCGTTGCGATTTACGGATT
1 CGCGTTGCGATTTACGGATA
*
84519 CTCGTTGCGATTTACGGATTA
1 CGCGTTGCGATTTACGGA-TA
*
84540 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
84559 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
84579 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
84599 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
84619 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
84639 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
84659 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
84679 CGCGTTGCGATTT
1 CGCGTTGCGATTT
84692 TGGAAAATCG
Statistics
Matches: 150, Mismatches: 19, Indels: 8
0.85 0.11 0.05
Matches are distributed among these distances:
19 2 0.01
20 146 0.97
21 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.35
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:86150 original size:21 final size:20
Alignment explanation
Indices: 86126--86165 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
86116 CAGATTGCTC
86126 AGAGGGAACCGATTTCCCCCA
1 AGAGGGAACCGA-TTCCCCCA
* *
86147 AGAGGGTACTGATTCCCCC
1 AGAGGGAACCGATTCCCCC
86166 TGAATGGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.25, C:0.33, G:0.25, T:0.17
Consensus pattern (20 bp):
AGAGGGAACCGATTCCCCCA
Found at i:97483 original size:23 final size:23
Alignment explanation
Indices: 97442--97505 Score: 85
Period size: 23 Copynumber: 2.8 Consensus size: 23
97432 GAATACAGAA
* *
97442 GGAATCGATACCCCC-TTGAAGG
1 GGAACCGATTCCCCCTTTGAAGG
*
97464 GGAACCGATTCCCCCTTTGAATG
1 GGAACCGATTCCCCCTTTGAAGG
97487 GGAACCGATTCCCTCCTTT
1 GGAACCGATTCCC-CCTTT
97506 AGGGAATCAA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
22 13 0.35
23 19 0.51
24 5 0.14
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.25
Consensus pattern (23 bp):
GGAACCGATTCCCCCTTTGAAGG
Found at i:99622 original size:11 final size:11
Alignment explanation
Indices: 99606--99630 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
99596 AGTTTTAACC
99606 TTAAAATAATT
1 TTAAAATAATT
99617 TTAAAATAATT
1 TTAAAATAATT
99628 TTA
1 TTA
99631 CAAAGTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
TTAAAATAATT
Found at i:103630 original size:14 final size:14
Alignment explanation
Indices: 103601--103668 Score: 66
Period size: 14 Copynumber: 4.9 Consensus size: 14
103591 CCCAAATTTC
*
103601 AAACCTTAAACCAT
1 AAACCCTAAACCAT
* *
103615 AAGCCCTAAGCCAT
1 AAACCCTAAACCAT
*
103629 AAACCTTAAACCAT
1 AAACCCTAAACCAT
* *
103643 AAATCATAAATCC-T
1 AAACCCTAAA-CCAT
103657 AAACCCTAAACC
1 AAACCCTAAACC
103669 CTTAATCTAA
Statistics
Matches: 43, Mismatches: 10, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
13 2 0.05
14 39 0.91
15 2 0.05
ACGTcount: A:0.47, C:0.31, G:0.03, T:0.19
Consensus pattern (14 bp):
AAACCCTAAACCAT
Found at i:103659 original size:28 final size:28
Alignment explanation
Indices: 103601--103668 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 28
103591 CCCAAATTTC
* *
103601 AAACCTTAAACCATAAGCCCTAAGCCAT
1 AAACCTTAAACCATAAACCATAAGCCAT
* *
103629 AAACCTTAAACCATAAATCATAAATCC-T
1 AAACCTTAAACCATAAACCAT-AAGCCAT
*
103657 AAACCCTAAACC
1 AAACCTTAAACC
103669 CTTAATCTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
28 30 0.88
29 4 0.12
ACGTcount: A:0.47, C:0.31, G:0.03, T:0.19
Consensus pattern (28 bp):
AAACCTTAAACCATAAACCATAAGCCAT
Found at i:103670 original size:7 final size:7
Alignment explanation
Indices: 103601--103668 Score: 57
Period size: 7 Copynumber: 9.7 Consensus size: 7
103591 CCCAAATTTC
*
103601 AAACCTT
1 AAACCAT
103608 AAACCAT
1 AAACCAT
* *
103615 AAGCCCT
1 AAACCAT
*
103622 AAGCCAT
1 AAACCAT
*
103629 AAACCTT
1 AAACCAT
103636 AAACCAT
1 AAACCAT
*
103643 AAATCAT
1 AAACCAT
103650 AAATCC-T
1 AAA-CCAT
*
103657 AAACCCT
1 AAACCAT
103664 AAACC
1 AAACC
103669 CTTAATCTAA
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
6 2 0.04
7 47 0.94
8 1 0.02
ACGTcount: A:0.47, C:0.31, G:0.03, T:0.19
Consensus pattern (7 bp):
AAACCAT
Found at i:104881 original size:11 final size:11
Alignment explanation
Indices: 104865--104939 Score: 60
Period size: 11 Copynumber: 6.6 Consensus size: 11
104855 CTTTTAGGCT
104865 TTGAGTTTGAA
1 TTGAGTTTGAA
*
104876 TTGAGTTTAAAA
1 TTGAGTTT-GAA
*
104888 TGGAGTTTGAA
1 TTGAGTTTGAA
* *
104899 TCGAGTTTAAAA
1 TTGAGTTT-GAA
*
104911 TGGAGTTTGAA
1 TTGAGTTTGAA
** *
104922 TCAAGCTTGAA
1 TTGAGTTTGAA
104933 TTGAGTT
1 TTGAGTT
104940 AAATCTTGAG
Statistics
Matches: 49, Mismatches: 13, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
11 31 0.63
12 18 0.37
ACGTcount: A:0.32, C:0.04, G:0.25, T:0.39
Consensus pattern (11 bp):
TTGAGTTTGAA
Found at i:104893 original size:23 final size:23
Alignment explanation
Indices: 104867--104923 Score: 105
Period size: 23 Copynumber: 2.5 Consensus size: 23
104857 TTTAGGCTTT
*
104867 GAGTTTGAATTGAGTTTAAAATG
1 GAGTTTGAATCGAGTTTAAAATG
104890 GAGTTTGAATCGAGTTTAAAATG
1 GAGTTTGAATCGAGTTTAAAATG
104913 GAGTTTGAATC
1 GAGTTTGAATC
104924 AAGCTTGAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.33, C:0.04, G:0.26, T:0.37
Consensus pattern (23 bp):
GAGTTTGAATCGAGTTTAAAATG
Found at i:104895 original size:12 final size:12
Alignment explanation
Indices: 104878--104918 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
104868 AGTTTGAATT
104878 GAGTTTAAAATG
1 GAGTTTAAAATG
* *
104890 GAGTTT-GAATC
1 GAGTTTAAAATG
104901 GAGTTTAAAATG
1 GAGTTTAAAATG
104913 GAGTTT
1 GAGTTT
104919 GAATCAAGCT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
11 9 0.38
12 15 0.62
ACGTcount: A:0.34, C:0.02, G:0.27, T:0.37
Consensus pattern (12 bp):
GAGTTTAAAATG
Found at i:114150 original size:20 final size:20
Alignment explanation
Indices: 114127--114178 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
114117 ACTAAGCGTT
114127 CGATATGGATACCCAATCTA
1 CGATATGGATACCCAATCTA
114147 CGATATGGATACCCAATCTA
1 CGATATGGATACCCAATCTA
114167 CGATATGGATAC
1 CGATATGGATAC
114179 TAATTCATCC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (20 bp):
CGATATGGATACCCAATCTA
Found at i:123728 original size:21 final size:20
Alignment explanation
Indices: 123695--123734 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
123685 TGCATCAGAG
123695 TCTTTATTGAGGCCATGAAA
1 TCTTTATTGAGGCCATGAAA
*
123715 TCTTTTTTCGAGGCCATGAA
1 TCTTTATT-GAGGCCATGAA
123735 TTTGTGTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (20 bp):
TCTTTATTGAGGCCATGAAA
Found at i:130691 original size:2 final size:2
Alignment explanation
Indices: 130684--130724 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
130674 AAATATTTTC
* * *
130684 AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT TT AT AC AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
130725 CTTTAAATAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:131201 original size:24 final size:24
Alignment explanation
Indices: 131174--131253 Score: 72
Period size: 24 Copynumber: 3.4 Consensus size: 24
131164 GAAATTTCCG
131174 CGTAGAATTTGCACCGAAGTGCCA
1 CGTAGAATTTGCACCGAAGTGCCA
* **
131198 CGTAGAATATGCAATGAAGTGCCA
1 CGTAGAATTTGCACCGAAGTGCCA
* * * * * *
131222 CATAG-ATTTACCCCGAAGAGTCG
1 CGTAGAATTTGCACCGAAGTGCCA
131245 CGTAGAATT
1 CGTAGAATT
131254 ATCCTGAAGG
Statistics
Matches: 42, Mismatches: 13, Indels: 2
0.74 0.23 0.04
Matches are distributed among these distances:
23 14 0.33
24 28 0.67
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.23
Consensus pattern (24 bp):
CGTAGAATTTGCACCGAAGTGCCA
Found at i:131386 original size:14 final size:15
Alignment explanation
Indices: 131369--131409 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
131359 ACCATATAAG
131369 TATTCACATAGCA-T
1 TATTCACATAGCATT
*
131383 TATTCACATGATCATT
1 TATTCACAT-AGCATT
131399 TATTCACATAG
1 TATTCACATAG
131410 AACACACACG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 9 0.39
15 4 0.17
16 10 0.43
ACGTcount: A:0.34, C:0.20, G:0.07, T:0.39
Consensus pattern (15 bp):
TATTCACATAGCATT
Found at i:137163 original size:20 final size:18
Alignment explanation
Indices: 137138--137206 Score: 70
Period size: 20 Copynumber: 3.7 Consensus size: 18
137128 TTAGAAGAAC
137138 AGTATCGATACCGAATGAG
1 AGTATCGATACC-AATGAG
137157 TAGTATCGATACCAA-G-G
1 -AGTATCGATACCAATGAG
* *
137174 GGTATCGATACCAATGAACA
1 AGTATCGATACCAATG-A-G
137194 AGTATCGATACCA
1 AGTATCGATACCA
137207 TTTTTATAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
16 13 0.31
17 2 0.05
18 1 0.02
19 2 0.05
20 24 0.57
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.22
Consensus pattern (18 bp):
AGTATCGATACCAATGAG
Found at i:137264 original size:19 final size:20
Alignment explanation
Indices: 137230--137268 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
137220 AATTCCAGAA
137230 TGAAGGATAGGTATCGATAC
1 TGAAGGATAGGTATCGATAC
*
137250 TGAAGTATA-GTATCGATAC
1 TGAAGGATAGGTATCGATAC
137269 CATAGTAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.36, C:0.10, G:0.26, T:0.28
Consensus pattern (20 bp):
TGAAGGATAGGTATCGATAC
Found at i:137762 original size:44 final size:45
Alignment explanation
Indices: 137699--137795 Score: 117
Period size: 44 Copynumber: 2.2 Consensus size: 45
137689 ATATTTCATT
* * ** *
137699 CTATGTGATTACGTGAAAATGTGACATAAGCT-TGTGGTATTGAC
1 CTATGTGACTACGTGAAAATGTGACATAAACTGTGTGACAATGAC
*
137743 CTATGTGACTATC-TGAAAATGTGATATAAACTGTGTGACAATGAC
1 CTATGTGACTA-CGTGAAAATGTGACATAAACTGTGTGACAATGAC
137788 CTATGTGA
1 CTATGTGA
137796 TTATATGTCT
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
44 27 0.60
45 18 0.40
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.33
Consensus pattern (45 bp):
CTATGTGACTACGTGAAAATGTGACATAAACTGTGTGACAATGAC
Found at i:137990 original size:46 final size:46
Alignment explanation
Indices: 137907--137994 Score: 115
Period size: 46 Copynumber: 1.9 Consensus size: 46
137897 GGTTCTATGC
* *
137907 GGTCCTTCGGGAAAATTCTACGTGGTCCTTCCAGACATTTCTGCTT
1 GGTCCTTCGGGAAAATACTACGTGGTCATTCCAGACATTTCTGCTT
* * *
137953 GGTCCTTCGGGATAATACTATGTGGT-ATTTCAGGACATTTCT
1 GGTCCTTCGGGAAAATACTACGTGGTCATTCCA-GACATTTCT
137995 ATGTGGCACT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
45 4 0.11
46 32 0.89
ACGTcount: A:0.19, C:0.22, G:0.23, T:0.36
Consensus pattern (46 bp):
GGTCCTTCGGGAAAATACTACGTGGTCATTCCAGACATTTCTGCTT
Found at i:142662 original size:45 final size:45
Alignment explanation
Indices: 142611--142742 Score: 131
Period size: 45 Copynumber: 3.0 Consensus size: 45
142601 ATATTTTATT
* ** *
142611 CTATGTGATTACGTGAAAAGGTGATATAAGCTATGTGGTATTGAC
1 CTATGTGATTACATGAAAAGGTGATATAAGCTATGTGACAATGAC
* * *
142656 CTATGTGACTATATGAAAATGTGATATAAGCTATGTGACAATGAC
1 CTATGTGATTACATGAAAAGGTGATATAAGCTATGTGACAATGAC
* * *** * *
142701 CTATGTAATTATATGTCTATGTGATAAAAGCTATGTGA-AATG
1 CTATGTGATTACATGAAAAGGTGATATAAGCTATGTGACAATG
142743 TGTAAATGGT
Statistics
Matches: 74, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
44 4 0.05
45 70 0.95
ACGTcount: A:0.35, C:0.09, G:0.22, T:0.34
Consensus pattern (45 bp):
CTATGTGATTACATGAAAAGGTGATATAAGCTATGTGACAATGAC
Found at i:142882 original size:46 final size:46
Alignment explanation
Indices: 142814--142910 Score: 140
Period size: 46 Copynumber: 2.1 Consensus size: 46
142804 GAGTCGAGGA
* * * *
142814 TTCTACGCGGTCCTTCGGGACAATTCTACGTGGTCCTTCGGGATAT
1 TTCTACGCGCTCCTTCGAGACAATACTACGTGGTCCTTCGGGACAT
* *
142860 TTCTACGTGCTCCTTCGAGACAATACTATGTGGTCCTTCGGGACAT
1 TTCTACGCGCTCCTTCGAGACAATACTACGTGGTCCTTCGGGACAT
142906 TTCTA
1 TTCTA
142911 TGTGGCACTT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.18, C:0.26, G:0.23, T:0.34
Consensus pattern (46 bp):
TTCTACGCGCTCCTTCGAGACAATACTACGTGGTCCTTCGGGACAT
Found at i:142921 original size:23 final size:23
Alignment explanation
Indices: 142813--142915 Score: 125
Period size: 23 Copynumber: 4.5 Consensus size: 23
142803 AGAGTCGAGG
*
142813 ATTCTACGCGGTCCTTCGGGACA
1 ATTCTACGTGGTCCTTCGGGACA
*
142836 ATTCTACGTGGTCCTTCGGGATA
1 ATTCTACGTGGTCCTTCGGGACA
* * *
142859 TTTCTACGTGCTCCTTCGAGACA
1 ATTCTACGTGGTCCTTCGGGACA
* *
142882 ATACTATGTGGTCCTTCGGGACA
1 ATTCTACGTGGTCCTTCGGGACA
* *
142905 TTTCTATGTGG
1 ATTCTACGTGG
142916 CACTTCAGTT
Statistics
Matches: 67, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 67 1.00
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.34
Consensus pattern (23 bp):
ATTCTACGTGGTCCTTCGGGACA
Done.