Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000480.1 Hibiscus syriacus cultivar Beakdansim tig00000910_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 869251
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 5
Found at i:652010 original size:134 final size:137
Alignment explanation
Indices: 651819--652087 Score: 368
Period size: 134 Copynumber: 2.0 Consensus size: 137
651809 TGTTTCATGG
*
651819 GAAACTATCTCAAGAGAGACAAAACTTTGTTTCAAGGAAAACAATTTCAAAGTTTTTGTTTCAAG
1 GAAACTATCTCAAGAGAGACAAAACTTTGTTTCAAGGAAAACAATTTCAAAGTTTTTGTTTAAAG
*
651884 GGAAACTGCCTCAAGAGAGACAAAA-ATTTTAAGAGAAAATGTATTAAGAGAGA-AAAAATTTGT
66 GGAAACTACCTCAAGAGAGACAAAATATTTTAAGAGAAAATGTATTAAGAGAGACAAAAATTTGT
651947 TTTAAAA
131 TTTAAAA
* *
651954 GAAACTGTCTCAAGGGAGACAAAA-TTTGTTTCAAGGAAAACAGA-TTCAAA-TATTTTGTTTAA
1 GAAACTATCTCAAGAGAGACAAAACTTTGTTTCAAGGAAAACA-ATTTCAAAGT-TTTTGTTTAA
* * * * * * *
652016 AGGGGAACTATCTCAAGAGAGATAAAATTTGTTTTAAGAGAAACTGTCTTAAGAGAGACAAAACT
64 AGGGAAACTACCTCAAGAGAGACAAAA--TATTTTAAGAGAAAATGTATTAAGAGAGACAAAAAT
652081 TTGTTTT
127 TTGTTTT
652088 GAGTAAATTA
Statistics
Matches: 117, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
133 1 0.01
134 56 0.48
135 23 0.20
137 25 0.21
138 12 0.10
ACGTcount: A:0.42, C:0.10, G:0.18, T:0.29
Consensus pattern (137 bp):
GAAACTATCTCAAGAGAGACAAAACTTTGTTTCAAGGAAAACAATTTCAAAGTTTTTGTTTAAAG
GGAAACTACCTCAAGAGAGACAAAATATTTTAAGAGAAAATGTATTAAGAGAGACAAAAATTTGT
TTTAAAA
Found at i:658994 original size:4 final size:4
Alignment explanation
Indices: 658985--659033 Score: 73
Period size: 4 Copynumber: 12.0 Consensus size: 4
658975 AATAGACCTA
658985 AAAT AAAT AAAT AAAT -AAT AAAT GAAAT AAAAT AAAT AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT -AAAT -AAAT AAAT AAAT AAAT AAAT
659034 GAAAAACATT
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
3 3 0.07
4 31 0.74
5 8 0.19
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:659119 original size:37 final size:36
Alignment explanation
Indices: 659041--659323 Score: 257
Period size: 39 Copynumber: 7.9 Consensus size: 36
659031 AATGAAAAAC
* * **
659041 ATTTTTAAAACTATACAATATATGCTTTAAAAAATA
1 ATTTTCAAAACTATATAATATATATTTTAAAAAATA
*
659077 ATTTTCAAAACCATATAATATATATTTTAAAAAAATA
1 ATTTTCAAAACTATATAATATATATTTT-AAAAAATA
*
659114 ATTTTCAAAACTATATAATATATATATTTTTAAAAACTA
1 ATTTTCAAAACTATAT-A-ATATATA-TTTTAAAAAATA
* * *
659153 ATTTTCAAAATTAAATAATATATATATTTTAAAAACTA
1 ATTTTCAAAACTATAT-A-ATATATATTTTAAAAAATA
* *
659191 ATTTTCAAAAC----T-ATATGT-TTTTAAAAACTA
1 ATTTTCAAAACTATATAATATATATTTTAAAAAATA
*
659221 ATTTTCAAAACTATATAATATATATGTTTTTCAAAAAT-
1 ATTTTCAAAACTATATAATATATA---TTTTAAAAAATA
* * *
659259 TTTTTAAAAACTATAT-ATATATATTTT-CAAAAT-
1 ATTTTCAAAACTATATAATATATATTTTAAAAAATA
*
659292 ATTTTCAAAAC-A-ATAATATATATTTTCAAAAA
1 ATTTTCAAAACTATATAATATATATTTTAAAAAA
659324 CTATATATTA
Statistics
Matches: 212, Mismatches: 20, Indels: 33
0.80 0.08 0.12
Matches are distributed among these distances:
30 23 0.11
31 7 0.03
32 12 0.06
33 18 0.08
34 6 0.03
35 5 0.02
36 23 0.11
37 30 0.14
38 37 0.17
39 47 0.22
40 4 0.02
ACGTcount: A:0.49, C:0.08, G:0.01, T:0.42
Consensus pattern (36 bp):
ATTTTCAAAACTATATAATATATATTTTAAAAAATA
Found at i:659200 original size:13 final size:13
Alignment explanation
Indices: 659178--659233 Score: 58
Period size: 13 Copynumber: 4.0 Consensus size: 13
659168 TAATATATAT
659178 ATTTTAAAAACTA
1 ATTTTAAAAACTA
*
659191 ATTTTCAAAACTA
1 ATTTTAAAAACTA
659204 TATGTTTTTAAAAACTA
1 -A---TTTTAAAAACTA
*
659221 ATTTTCAAAACTA
1 ATTTTAAAAACTA
659234 TATAATATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
13 23 0.64
14 1 0.03
16 1 0.03
17 11 0.31
ACGTcount: A:0.46, C:0.11, G:0.02, T:0.41
Consensus pattern (13 bp):
ATTTTAAAAACTA
Found at i:659215 original size:30 final size:30
Alignment explanation
Indices: 659179--659236 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
659169 AATATATATA
659179 TTTTAAAAACTAATTTTCAAAACTATATGT
1 TTTTAAAAACTAATTTTCAAAACTATATGT
659209 TTTTAAAAACTAATTTTCAAAACTATAT
1 TTTTAAAAACTAATTTTCAAAACTATAT
659237 AATATATATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.45, C:0.10, G:0.02, T:0.43
Consensus pattern (30 bp):
TTTTAAAAACTAATTTTCAAAACTATATGT
Found at i:659235 original size:107 final size:101
Alignment explanation
Indices: 659095--659302 Score: 274
Period size: 107 Copynumber: 2.0 Consensus size: 101
659085 AACCATATAA
*
659095 TATATATTTTAAAAAAATAATTTTCAAAACTATATAATATATATATTTTT-AAAAACTAATTTTC
1 TATATATTTTAAAAAAATAATTTTCAAAACTATATAATATATATATTTTTCAAAAA-T-ATTTTA
*
659159 AAAATTAAATAATATATATATTTTAAAAACTAATTTTCAAAAC
64 AAAACT--AT-ATATATATATTTTAAAAA-T-ATTTTCAAAAC
* * * * *
659202 TATATGTTTTTAAAAACTAATTTTCAAAACTATATAATATATATGTTTTTCAAAAATTTTTTAAA
1 TATATATTTTAAAAAAATAATTTTCAAAACTATATAATATATATATTTTTCAAAAATATTTTAAA
*
659267 AACTATATATATATATTTTCAAAATATTTTCAAAAC
66 AACTATATATATATATTTTAAAAATATTTTCAAAAC
659303 AATAATATAT
Statistics
Matches: 92, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
101 11 0.12
102 1 0.01
103 17 0.18
104 2 0.02
106 9 0.10
107 47 0.51
108 5 0.05
ACGTcount: A:0.48, C:0.07, G:0.01, T:0.44
Consensus pattern (101 bp):
TATATATTTTAAAAAAATAATTTTCAAAACTATATAATATATATATTTTTCAAAAATATTTTAAA
AACTATATATATATATTTTAAAAATATTTTCAAAAC
Found at i:659269 original size:68 final size:68
Alignment explanation
Indices: 659134--659326 Score: 202
Period size: 68 Copynumber: 2.8 Consensus size: 68
659124 CTATATAATA
* *
659134 TATATATTTTTAAAAACTAATTTTCAAAATTAAATAATATATATATTTTAAAAACTAATTTTCAA
1 TATATATTTTTAAAAACTAATTTTCAAAACTAAATAATATATATATTTTAAAAACTAATTTTAAA
659199 AAC
66 AAC
* * * *
659202 TATATGTTTTTAAAAACTAATTTTCAAAACTATATAATATATATGTTTTTCAAAAA-T-TTTTTA
1 TATATATTTTTAAAAACTAATTTTCAAAACTAAATAATATATAT-ATTTT-AAAAACTAATTTTA
659265 AAAAC
64 AAAAC
* *
659270 TATATATATATATTTTCAAAA-T-ATTTTCAAAAC--AATAATATATAT-TTTCAAAAACTA
1 ----TATATAT-TTTTAAAAACTAATTTTCAAAACTAAATAATATATATATTTTAAAAACTA
659327 TATATTATAT
Statistics
Matches: 106, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
66 5 0.05
67 4 0.04
68 50 0.47
69 16 0.15
70 5 0.05
71 11 0.10
72 7 0.07
73 8 0.08
ACGTcount: A:0.48, C:0.08, G:0.01, T:0.44
Consensus pattern (68 bp):
TATATATTTTTAAAAACTAATTTTCAAAACTAAATAATATATATATTTTAAAAACTAATTTTAAA
AAC
Found at i:659277 original size:33 final size:32
Alignment explanation
Indices: 659237--659323 Score: 95
Period size: 33 Copynumber: 2.6 Consensus size: 32
659227 AAAACTATAT
*
659237 AATATATATGTTTTTCAAAAATTTTTTAAAAAC
1 AATATATAT-TTTTTCAAAAATATTTTAAAAAC
* *
659270 TATATATATATATTTTC-AAAATATTTTCAAAAC
1 -A-ATATATATTTTTTCAAAAATATTTTAAAAAC
*
659303 AATAATATATATTTTCAAAAA
1 AAT-ATATATTTTTTCAAAAA
659324 CTATATATTA
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
31 2 0.04
32 13 0.28
33 18 0.38
34 6 0.13
35 8 0.17
ACGTcount: A:0.48, C:0.07, G:0.01, T:0.44
Consensus pattern (32 bp):
AATATATATTTTTTCAAAAATATTTTAAAAAC
Found at i:659281 original size:39 final size:39
Alignment explanation
Indices: 659202--659282 Score: 114
Period size: 38 Copynumber: 2.1 Consensus size: 39
659192 TTTTCAAAAC
*
659202 TATATGTTTTTAAAAACTAATTTTCAAAACTATATAATA
1 TATATGTTTTTAAAAACTAATTTTAAAAACTATATAATA
*
659241 TATATGTTTTTCAAAAA-T-TTTTTAAAAACTATAT-ATA
1 TATATGTTTTT-AAAAACTAATTTTAAAAACTATATAATA
659278 TATAT
1 TATAT
659283 TTTCAAAATA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
37 8 0.21
38 14 0.36
39 12 0.31
40 5 0.13
ACGTcount: A:0.44, C:0.06, G:0.02, T:0.47
Consensus pattern (39 bp):
TATATGTTTTTAAAAACTAATTTTAAAAACTATATAATA
Found at i:659335 original size:22 final size:23
Alignment explanation
Indices: 659290--659346 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 23
659280 TATTTTCAAA
659290 ATATTTTC-AAAACAATAA-TAT
1 ATATTTTCAAAAACAATAATTAT
*
659311 ATATTTTCAAAAACTATATATTAT
1 ATATTTTCAAAAACAATA-ATTAT
659335 ATATTTTCAAAA
1 ATATTTTCAAAA
659347 TATTTAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
21 8 0.25
22 8 0.25
23 1 0.03
24 15 0.47
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.42
Consensus pattern (23 bp):
ATATTTTCAAAAACAATAATTAT
Found at i:659358 original size:56 final size:58
Alignment explanation
Indices: 659259--659382 Score: 173
Period size: 56 Copynumber: 2.2 Consensus size: 58
659249 TTTCAAAAAT
* **
659259 TTTTTAAAAACTATATATATATATTTTCAAAATATTTTCAAAA-CA-ATAATATAT-A
1 TTTTCAAAAACTATATATATATATTTTCAAAATATTTAAAAAACCATATAATATATAA
*
659314 TTTTCAAAAACTATATATTATATATTTTCAAAATATTTAAAAAACCCATATATTATATAA
1 TTTTCAAAAACTATATA-TATATATTTTCAAAATATTTAAAAAA-CCATATAATATATAA
659374 TTTTCAAAA
1 TTTTCAAAA
659383 TGATTCCAAA
Statistics
Matches: 60, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
55 16 0.27
56 24 0.40
58 2 0.03
59 8 0.13
60 10 0.17
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (58 bp):
TTTTCAAAAACTATATATATATATTTTCAAAATATTTAAAAAACCATATAATATATAA
Found at i:659403 original size:92 final size:91
Alignment explanation
Indices: 659221--659406 Score: 220
Period size: 92 Copynumber: 2.0 Consensus size: 91
659211 TTAAAAACTA
* * * *
659221 ATTTTCAAAACTATATAATATATATGTTTTTCAAAAATTTTTTAAAAACTATATATATATATTTT
1 ATTTTCAAAACTATATAATATATATGATTTTCAAAAATATTTAAAAAACCATATATATATATTTT
659286 CAAAATATTTTCAAAACAATAATATAT
66 CAAAATA-TTTCAAAACAATAATATAT
659313 ATTTTCAAAAACTATAT-AT-TATAT-ATTTTC-AAAATATTTAAAAAACCCATATATTATATAA
1 ATTTTC-AAAACTATATAATATATATGATTTTCAAAAATATTTAAAAAA-CCATATA-TATAT-A
* *
659374 TTTTCAAAATGA-TTCCAAACTATATATATAT
62 TTTTCAAAAT-ATTTCAAAACAATA-ATATAT
659405 AT
1 AT
659407 ATATAACTAA
Statistics
Matches: 82, Mismatches: 6, Indels: 12
0.82 0.06 0.12
Matches are distributed among these distances:
89 13 0.16
90 11 0.13
91 20 0.24
92 27 0.33
93 11 0.13
ACGTcount: A:0.47, C:0.09, G:0.01, T:0.43
Consensus pattern (91 bp):
ATTTTCAAAACTATATAATATATATGATTTTCAAAAATATTTAAAAAACCATATATATATATTTT
CAAAATATTTCAAAACAATAATATAT
Found at i:661828 original size:20 final size:20
Alignment explanation
Indices: 661803--661844 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
661793 CATTCTCGTA
661803 TACATGCCAACTATAACTTT
1 TACATGCCAACTATAACTTT
661823 TACATGCCAACTATAACTTT
1 TACATGCCAACTATAACTTT
661843 TA
1 TA
661845 GAACACAGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.36
Consensus pattern (20 bp):
TACATGCCAACTATAACTTT
Found at i:662250 original size:25 final size:26
Alignment explanation
Indices: 662222--662274 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 26
662212 ACCGAAGTGC
*
662222 TAATACATATAAGGCCATA-CCACCA
1 TAATACACATAAGGCCATACCCACCA
* *
662247 TAATACACATAAGGTCGTACCCACCA
1 TAATACACATAAGGCCATACCCACCA
662273 TA
1 TA
662275 TGCACTTAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.42, C:0.28, G:0.09, T:0.21
Consensus pattern (26 bp):
TAATACACATAAGGCCATACCCACCA
Found at i:665121 original size:13 final size:14
Alignment explanation
Indices: 665105--665133 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
665095 TTTATTTGAT
665105 TAGAA-AATTTTAA
1 TAGAATAATTTTAA
665118 TAGAATAATTTTAA
1 TAGAATAATTTTAA
665132 TA
1 TA
665134 TTAAATAGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.33
14 10 0.67
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (14 bp):
TAGAATAATTTTAA
Found at i:665852 original size:16 final size:16
Alignment explanation
Indices: 665831--665863 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
665821 TAATAAATAA
665831 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
665847 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
665863 A
1 A
665864 AATTTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.58, C:0.24, G:0.12, T:0.06
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:665953 original size:16 final size:16
Alignment explanation
Indices: 665932--665988 Score: 82
Period size: 16 Copynumber: 3.7 Consensus size: 16
665922 TAATAAATAA
665932 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
*
665948 ACGAACTTAAACG-A-
1 ACGAACATAAACGAAC
*
665962 ACGAACATAAATGAAC
1 ACGAACATAAACGAAC
665978 ACGAACATAAA
1 ACGAACATAAA
665989 TCAACATAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
14 11 0.31
15 2 0.06
16 23 0.64
ACGTcount: A:0.56, C:0.21, G:0.12, T:0.11
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:665967 original size:30 final size:30
Alignment explanation
Indices: 665931--665988 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
665921 TTAATAAATA
*
665931 AACGAACATAAACGAACACGAACTTAAACG
1 AACGAACATAAACGAACACGAACATAAACG
*
665961 AACGAACATAAATGAACACGAACATAAA
1 AACGAACATAAACGAACACGAACATAAA
665989 TCAACATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.57, C:0.21, G:0.12, T:0.10
Consensus pattern (30 bp):
AACGAACATAAACGAACACGAACATAAACG
Found at i:665989 original size:16 final size:16
Alignment explanation
Indices: 665924--665994 Score: 78
Period size: 16 Copynumber: 4.7 Consensus size: 16
665914 CGTTCATTTA
665924 ATAAAT-AA-ACGAAC
1 ATAAATGAACACGAAC
*
665938 ATAAACGAACACGAAC
1 ATAAATGAACACGAAC
* *
665954 TTAAACG-A-ACGAAC
1 ATAAATGAACACGAAC
665968 ATAAATGAACACGAAC
1 ATAAATGAACACGAAC
*
665984 ATAAATCAACA
1 ATAAATGAACA
665995 TAAACATTGG
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
14 16 0.33
15 4 0.08
16 28 0.58
ACGTcount: A:0.58, C:0.20, G:0.10, T:0.13
Consensus pattern (16 bp):
ATAAATGAACACGAAC
Found at i:667094 original size:10 final size:10
Alignment explanation
Indices: 667079--667130 Score: 59
Period size: 10 Copynumber: 4.8 Consensus size: 10
667069 ATAAATGAAT
667079 GAACATAAAC
1 GAACATAAAC
667089 GAACATAATCGAAC
1 GAACAT-A---AAC
667103 GAACATAAAC
1 GAACATAAAC
*
667113 GAACATAACC
1 GAACATAAAC
667123 GAACATAA
1 GAACATAA
667131 CCGAGCGTTC
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
10 26 0.70
11 1 0.03
13 1 0.03
14 9 0.24
ACGTcount: A:0.56, C:0.21, G:0.12, T:0.12
Consensus pattern (10 bp):
GAACATAAAC
Found at i:667103 original size:14 final size:14
Alignment explanation
Indices: 667086--667116 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
667076 AATGAACATA
*
667086 AACGAACATAATCG
1 AACGAACATAAACG
667100 AACGAACATAAACG
1 AACGAACATAAACG
667114 AAC
1 AAC
667117 ATAACCGAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.55, C:0.23, G:0.13, T:0.10
Consensus pattern (14 bp):
AACGAACATAAACG
Found at i:667106 original size:24 final size:24
Alignment explanation
Indices: 667066--667126 Score: 88
Period size: 24 Copynumber: 2.5 Consensus size: 24
667056 GATTGAGTTA
*
667066 AACATAAAT-GAATGAACATAAACG
1 AACAT-AATCGAACGAACATAAACG
667090 AACATAATCGAACGAACATAAACG
1 AACATAATCGAACGAACATAAACG
*
667114 AACATAACCGAAC
1 AACATAATCGAAC
667127 ATAACCGAGC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
23 3 0.09
24 31 0.91
ACGTcount: A:0.56, C:0.20, G:0.11, T:0.13
Consensus pattern (24 bp):
AACATAATCGAACGAACATAAACG
Found at i:673514 original size:25 final size:25
Alignment explanation
Indices: 673467--673514 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
673457 TTGTAATAAG
**
673467 AAAAAATAATACAAACATGATACAA
1 AAAAAATAATACAAACACAATACAA
*
673492 AAAAAATAATATAAACACAATAC
1 AAAAAATAATACAAACACAATAC
673515 TACTACTGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.69, C:0.12, G:0.02, T:0.17
Consensus pattern (25 bp):
AAAAAATAATACAAACACAATACAA
Found at i:681833 original size:15 final size:15
Alignment explanation
Indices: 681809--681840 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
681799 TGGCAGATCG
*
681809 AAATCCAGAACGGGA
1 AAATCAAGAACGGGA
681824 AAATCAAGAACGGGA
1 AAATCAAGAACGGGA
681839 AA
1 AA
681841 TAAAGATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.53, C:0.16, G:0.25, T:0.06
Consensus pattern (15 bp):
AAATCAAGAACGGGA
Found at i:681841 original size:14 final size:14
Alignment explanation
Indices: 681808--681846 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
681798 GTGGCAGATC
*
681808 GAAATCCAGAACGG
1 GAAATCAAGAACGG
681822 GAAAATCAAGAACGG
1 G-AAATCAAGAACGG
*
681837 GAAATAAAGA
1 GAAATCAAGA
681847 TTTTACCTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 9 0.41
15 13 0.59
ACGTcount: A:0.54, C:0.13, G:0.26, T:0.08
Consensus pattern (14 bp):
GAAATCAAGAACGG
Found at i:683732 original size:36 final size:36
Alignment explanation
Indices: 683650--683734 Score: 102
Period size: 37 Copynumber: 2.3 Consensus size: 36
683640 TGGCAACCAA
683650 CTTTGAAAAAATGGTTTTCAAAGTTTGGTAAATGATT
1 CTTT-AAAAAATGGTTTTCAAAGTTTGGTAAATGATT
* * *
683687 CTTTGAAAAATAGTTTTTCAAAGTTTGGTAGATG-TT
1 CTTTAAAAAAT-GGTTTTCAAAGTTTGGTAAATGATT
683723 -TGTTAAAAAATG
1 CT-TTAAAAAATG
683735 ATAATGGGAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
35 2 0.05
36 16 0.38
37 24 0.57
ACGTcount: A:0.35, C:0.05, G:0.19, T:0.41
Consensus pattern (36 bp):
CTTTAAAAAATGGTTTTCAAAGTTTGGTAAATGATT
Found at i:700297 original size:21 final size:23
Alignment explanation
Indices: 700272--700410 Score: 123
Period size: 23 Copynumber: 6.3 Consensus size: 23
700262 CACCAAAGTG
*
700272 CCACATAATTAT-C-CCGAAGGA
1 CCACATAGTTATGCACCGAAGGA
* *
700293 CCACATAGGTT-TGCACCTAAGTA
1 CCACATA-GTTATGCACCGAAGGA
* *
700316 CCACATAGTTTTGCACCGAAGTA
1 CCACATAGTTATGCACCGAAGGA
* *
700339 CCACATAGTTTTGCACCGAAGTA
1 CCACATAGTTATGCACCGAAGGA
*
700362 CCACATA-TT-TGTC-CCAAAGGA
1 CCACATAGTTATG-CACCGAAGGA
*
700383 CCACATAATTAT-C-CCGAAGGA
1 CCACATAGTTATGCACCGAAGGA
700404 CCACATA
1 CCACATA
700411 TAACCCTCGA
Statistics
Matches: 104, Mismatches: 7, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
21 38 0.37
22 11 0.11
23 55 0.53
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (23 bp):
CCACATAGTTATGCACCGAAGGA
Found at i:700322 original size:23 final size:23
Alignment explanation
Indices: 700258--700368 Score: 145
Period size: 23 Copynumber: 4.9 Consensus size: 23
700248 CAGCTCGTAA
* * *
700258 TTTGCACCAAAGTGCCACATAAT
1 TTTGCACCGAAGTACCACATAGT
* * *
700281 TAT-C-CCGAAGGACCACATAGG
1 TTTGCACCGAAGTACCACATAGT
*
700302 TTTGCACCTAAGTACCACATAGT
1 TTTGCACCGAAGTACCACATAGT
700325 TTTGCACCGAAGTACCACATAGT
1 TTTGCACCGAAGTACCACATAGT
700348 TTTGCACCGAAGTACCACATA
1 TTTGCACCGAAGTACCACATA
700369 TTTGTCCCAA
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
21 14 0.19
22 2 0.03
23 59 0.79
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.24
Consensus pattern (23 bp):
TTTGCACCGAAGTACCACATAGT
Found at i:700346 original size:46 final size:44
Alignment explanation
Indices: 700258--700389 Score: 156
Period size: 46 Copynumber: 3.0 Consensus size: 44
700248 CAGCTCGTAA
*
700258 TTTGCACCAAAGTGCCACATAATTATCCCGAAGGACCACATAGG
1 TTTGCACCAAAGTACCACATAATTATCCCGAAGGACCACATAGG
* * * * *
700302 TTTGCACCTAAGTACCACATAGTTTTGCACCGAAGTACCACATAGT
1 TTTGCACCAAAGTACCACATAATTAT-C-CCGAAGGACCACATAGG
* * * *
700348 TTTGCACCGAAGTACCACATATTTGTCCCAAAGGACCACATA
1 TTTGCACCAAAGTACCACATAATTATCCCGAAGGACCACATA
700390 ATTATCCCGA
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
44 35 0.47
45 2 0.03
46 38 0.51
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (44 bp):
TTTGCACCAAAGTACCACATAATTATCCCGAAGGACCACATAGG
Found at i:707750 original size:32 final size:34
Alignment explanation
Indices: 707709--707781 Score: 105
Period size: 34 Copynumber: 2.2 Consensus size: 34
707699 TTTTCTAACT
* *
707709 TACTGACATTCTAAC-TTTTA-TTTTACTGTTTA
1 TACTAACATTCTAACTTTTTATTTTTACTGTTCA
*
707741 TACTAACATTCTAACTTTTTATTTTTATTGTTCA
1 TACTAACATTCTAACTTTTTATTTTTACTGTTCA
707775 TACTAAC
1 TACTAAC
707782 TTTTTATTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
32 14 0.39
33 5 0.14
34 17 0.47
ACGTcount: A:0.27, C:0.16, G:0.04, T:0.52
Consensus pattern (34 bp):
TACTAACATTCTAACTTTTTATTTTTACTGTTCA
Found at i:707785 original size:26 final size:26
Alignment explanation
Indices: 707751--707809 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 26
707741 TACTAACATT
*
707751 CTAACTTTTTATTTTTATTGTTCATA
1 CTAACTTTTTATTTTTATTGCTCATA
*
707777 CTAACTTTTTATTTTTATTGCTCTTA
1 CTAACTTTTTATTTTTATTGCTCATA
707803 CTAACTT
1 CTAACTT
707810 ACTAACATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.22, C:0.15, G:0.03, T:0.59
Consensus pattern (26 bp):
CTAACTTTTTATTTTTATTGCTCATA
Found at i:707839 original size:33 final size:34
Alignment explanation
Indices: 707775--707840 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 34
707765 TTATTGTTCA
* * **
707775 TACTAACTTTTTATTTTTATTGCTCTTACTAACT
1 TACTAACATTTTATTTTTATTGCACAAACTAACT
707809 TACTAACATTTTA-TTTTATTGCACAAACTAAC
1 TACTAACATTTTATTTTTATTGCACAAACTAAC
707841 CCGCTAATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 16 0.57
34 12 0.43
ACGTcount: A:0.30, C:0.18, G:0.03, T:0.48
Consensus pattern (34 bp):
TACTAACATTTTATTTTTATTGCACAAACTAACT
Found at i:708287 original size:17 final size:17
Alignment explanation
Indices: 708265--708326 Score: 115
Period size: 17 Copynumber: 3.6 Consensus size: 17
708255 TTATAAAGTT
*
708265 TTCATGTTAGTCTCTTG
1 TTCATGTTAGTCCCTTG
708282 TTCATGTTAGTCCCTTG
1 TTCATGTTAGTCCCTTG
708299 TTCATGTTAGTCCCTTG
1 TTCATGTTAGTCCCTTG
708316 TTCATGTTAGT
1 TTCATGTTAGT
708327 AGACTACCGA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
17 44 1.00
ACGTcount: A:0.13, C:0.19, G:0.18, T:0.50
Consensus pattern (17 bp):
TTCATGTTAGTCCCTTG
Found at i:712298 original size:11 final size:11
Alignment explanation
Indices: 712262--712314 Score: 79
Period size: 11 Copynumber: 4.6 Consensus size: 11
712252 TAAAGCAAAG
712262 GAAAAAAAGAA
1 GAAAAAAAGAA
*
712273 AAAACAAAAGCAA
1 GAAA-AAAAG-AA
712286 GAAAAAAAGAA
1 GAAAAAAAGAA
712297 GAAAAAAAGAA
1 GAAAAAAAGAA
712308 GAAAAAA
1 GAAAAAA
712315 TAAGAAATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
11 23 0.61
12 10 0.26
13 5 0.13
ACGTcount: A:0.81, C:0.04, G:0.15, T:0.00
Consensus pattern (11 bp):
GAAAAAAAGAA
Found at i:712320 original size:24 final size:24
Alignment explanation
Indices: 712253--712314 Score: 83
Period size: 24 Copynumber: 2.6 Consensus size: 24
712243 AAGATAAAAT
712253 AAAGCAAAGGAAAAAAAGAAAAAACA
1 AAAGC-AA-GAAAAAAAGAAAAAACA
*
712279 AAAGCAAGAAAAAAAGAAGAAA-A
1 AAAGCAAGAAAAAAAGAAAAAACA
712302 AAAG-AAGAAAAAA
1 AAAGCAAGAAAAAA
712315 TAAGAAATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
22 9 0.26
23 5 0.14
24 14 0.40
25 2 0.06
26 5 0.14
ACGTcount: A:0.79, C:0.05, G:0.16, T:0.00
Consensus pattern (24 bp):
AAAGCAAGAAAAAAAGAAAAAACA
Found at i:715769 original size:122 final size:123
Alignment explanation
Indices: 715555--716137 Score: 570
Period size: 122 Copynumber: 4.8 Consensus size: 123
715545 GAAAGTTCCC
* * * * * *
715555 AGAAATCTTCAACATGGATGAGCAGTGTCATATTTAACACCAAATTATCTCCAGATTGACCCGAC
1 AGAACTCTTCAACATGGATGAGCAGAGTCGTCTTCAACACCAAATTATCTCCAGATTGACCCGAT
* * * *
715620 TTCCTTAACAAGAAGGAATATCATCATCTTCAGCAAATAATTTACCTGAAAGCAG-CT
66 TTCCTCAACAAGAAGGAACAACATCATCTTCAGCAAACAATTTACCTGAAAGCAGACT
* * *
715677 AGAACTCTTCAACATGGATGAGCAGAGTTGTCTTTAACACCAATTTATCTCCAGATTGACCCGAC
1 AGAACTCTTCAACATGGATGAGCAGAGTCGTCTTCAACACCAAATTATCTCCAGATTGACCCGA-
* * * * *
715742 TTT-CTTAACAAGAATGAACAACTTCATCTTCAGAAAACAATTTACCTGAAAGC-GTCT
65 TTTCCTCAACAAGAAGGAACAACATCATCTTCAGCAAACAATTTACCTGAAAGCAGACT
* * *** * *
715799 AGAACTCTTCAATACGGATGAGCAGAGTCGTCTTCAACACTGTATTATCTACAGATTGACCTGAT
1 AGAACTCTTCAACATGGATGAGCAGAGTCGTCTTCAACACCAAATTATCTCCAGATTGACCCGAT
** * * *
715864 TTCCTCAA-AGAGAAGGAACAATGTCATCTTCAACAAACAATTTATCTGAAAACA-ACT
66 TTCCTCAACA-AGAAGGAACAACATCATCTTCAGCAAACAATTTACCTGAAAGCAGACT
* * * * * * *
715921 ATATA-TCTTCAACATGGATGAGTAGGGTCATCTTCAACACCGAATTATCTCTAGATTGACTCGA
1 AGA-ACTCTTCAACATGGATGAGCAGAGTCGTCTTCAACACCAAATTATCTCCAGATTGACCCGA
* * * * * * * *
715985 TTTCCCCAACAAGAAGGAACATCATCATCTTTAGCAAGCAATTTATCTGAATG-TGACC
65 TTTCCTCAACAAGAAGGAACAACATCATCTTCAGCAAACAATTTACCTGAAAGCAGACT
* * * * *
716043 AGATCTCTTCAACATGGATGA-TAAATGTCGTCTTCAACACCAAATTATATCCATATTGACCCGA
1 AGAACTCTTCAACATGGATGAGCAGA-GTCGTCTTCAACACCAAATTATCTCCAGATTGACCCGA
** * * **
716107 AGTCCTCAACATGAAGAAACAATGTCATCTT
65 TTTCCTCAACAAGAAGGAACAACATCATCTT
716138 TTGTCCTAAA
Statistics
Matches: 378, Mismatches: 73, Indels: 20
0.80 0.15 0.04
Matches are distributed among these distances:
121 7 0.02
122 367 0.97
123 4 0.01
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.28
Consensus pattern (123 bp):
AGAACTCTTCAACATGGATGAGCAGAGTCGTCTTCAACACCAAATTATCTCCAGATTGACCCGAT
TTCCTCAACAAGAAGGAACAACATCATCTTCAGCAAACAATTTACCTGAAAGCAGACT
Found at i:716856 original size:16 final size:15
Alignment explanation
Indices: 716833--716862 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
716823 TATTATAACC
716833 ATTTTTTATTTATTG
1 ATTTTTTATTTATTG
716848 ATTTGTTTATTTATT
1 ATTT-TTTATTTATT
716863 TTTTCTCATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.20, C:0.00, G:0.07, T:0.73
Consensus pattern (15 bp):
ATTTTTTATTTATTG
Found at i:716951 original size:13 final size:13
Alignment explanation
Indices: 716933--716973 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
716923 AACTCCTAAA
716933 TTTTTATTATTAT
1 TTTTTATTATTAT
716946 TTTTTATTATT-T
1 TTTTTATTATTAT
*
716958 TTTTGATTTATTAT
1 TTTTTA-TTATTAT
716972 TT
1 TT
716974 GACCTTGTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
12 6 0.24
13 16 0.64
14 3 0.12
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (13 bp):
TTTTTATTATTAT
Found at i:717100 original size:32 final size:30
Alignment explanation
Indices: 717067--717174 Score: 88
Period size: 26 Copynumber: 3.7 Consensus size: 30
717057 CTTACTGACA
717067 TTCTAACTTTTATTTTATTGTTTATACTAAC
1 TTCTAACTTTT-TTTTATTGTTTATACTAAC
*
717098 ATTCTAAC--TTTTTT-TTGTTCATACTAAC
1 -TTCTAACTTTTTTTTATTGTTTATACTAAC
*
717126 TT-T---TTATTTTTATTGTTCT-TACTAAC
1 TTCTAACTTTTTTTTATTGTT-TATACTAAC
717152 TTACTAACATTTTATTTTATTGT
1 TT-CTAAC-TTTT-TTTTATTGT
717175 ACAAACTAAC
Statistics
Matches: 61, Mismatches: 4, Indels: 21
0.71 0.05 0.24
Matches are distributed among these distances:
25 5 0.08
26 15 0.25
27 2 0.03
28 14 0.23
29 4 0.07
30 2 0.03
32 10 0.16
33 9 0.15
ACGTcount: A:0.24, C:0.13, G:0.04, T:0.59
Consensus pattern (30 bp):
TTCTAACTTTTTTTTATTGTTTATACTAAC
Found at i:717142 original size:26 final size:26
Alignment explanation
Indices: 717069--717153 Score: 93
Period size: 26 Copynumber: 3.3 Consensus size: 26
717059 TACTGACATT
*
717069 CTAAC-TTTTA-TTTTATTGTTTATA
1 CTAACTTTTTATTTTTATTGTTCATA
* * *
717093 CTAACATTCTAACTTTTTTTTGTTCATA
1 CTAAC-TTTTTA-TTTTTATTGTTCATA
*
717121 CTAACTTTTTATTTTTATTGTTCTTA
1 CTAACTTTTTATTTTTATTGTTCATA
717147 CTAACTT
1 CTAACTT
717154 ACTAACATTT
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
24 5 0.10
26 23 0.47
27 4 0.08
28 17 0.35
ACGTcount: A:0.24, C:0.14, G:0.04, T:0.59
Consensus pattern (26 bp):
CTAACTTTTTATTTTTATTGTTCATA
Found at i:717183 original size:33 final size:34
Alignment explanation
Indices: 717119--717184 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 34
717109 TTTTTGTTCA
* * **
717119 TACTAACTTTTTATTTTTATTGTTCTTACTAACT
1 TACTAACATTTTATTTTTATTGTACAAACTAACT
717153 TACTAACATTTTA-TTTTATTGTACAAACTAAC
1 TACTAACATTTTATTTTTATTGTACAAACTAAC
717185 CCACTAATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 16 0.57
34 12 0.43
ACGTcount: A:0.30, C:0.15, G:0.03, T:0.52
Consensus pattern (34 bp):
TACTAACATTTTATTTTTATTGTACAAACTAACT
Found at i:725009 original size:19 final size:20
Alignment explanation
Indices: 724975--725013 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
724965 ATTTCTTAAT
*
724975 AACATAACATTTTAATATAA
1 AACAAAACATTTTAATATAA
724995 AACAAAACA-TTTAATATAA
1 AACAAAACATTTTAATATAA
725014 CTATTATAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.59, C:0.10, G:0.00, T:0.31
Consensus pattern (20 bp):
AACAAAACATTTTAATATAA
Found at i:725480 original size:46 final size:46
Alignment explanation
Indices: 725430--725700 Score: 359
Period size: 46 Copynumber: 5.9 Consensus size: 46
725420 TATGGTCTCT
* * * * *
725430 TTTCATACATTAATACATCCATTCATACTTTTTAATTATGGCATCC
1 TTTCATGCCTTAATGCATCCATTCATGCATTTTAATTATGGCATCC
* *
725476 TTTCATGCCTTAATGCATCCTTTCATGGATTTTCAATTATGGCATCC
1 TTTCATGCCTTAATGCATCCATTCATGCATTTT-AATTATGGCATCC
* **
725523 TTTCATGCCTTAATGC-TCCTTTCATGCATTTTAATTATGAAATCC
1 TTTCATGCCTTAATGCATCCATTCATGCATTTTAATTATGGCATCC
* * * *
725568 TTTCATGACTTAATGCATCCTTTCATGCATTTTAATTACGGTATCC
1 TTTCATGCCTTAATGCATCCATTCATGCATTTTAATTATGGCATCC
725614 TTTCATGCCTTAATGCAT-CATTTCATGCATTTTAATTATGGCATCC
1 TTTCATGCCTTAATGCATCCA-TTCATGCATTTTAATTATGGCATCC
*
725660 TTTCACGCCTTAATGCAT-CATTTCATGCATTTTAATTATGG
1 TTTCATGCCTTAATGCATCCA-TTCATGCATTTTAATTATGG
725701 ATTCGATTTA
Statistics
Matches: 203, Mismatches: 19, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
45 27 0.13
46 147 0.72
47 29 0.14
ACGTcount: A:0.25, C:0.22, G:0.10, T:0.44
Consensus pattern (46 bp):
TTTCATGCCTTAATGCATCCATTCATGCATTTTAATTATGGCATCC
Found at i:725495 original size:20 final size:20
Alignment explanation
Indices: 725470--725687 Score: 105
Period size: 20 Copynumber: 9.7 Consensus size: 20
725460 TTTAATTATG
725470 GCATCCTTTCATGCCTTAAT
1 GCATCCTTTCATGCCTTAAT
**
725490 GCATCCTTTCATGGATTTTCAATTAT
1 GCATCCTTTCAT-G-CCTT--A--AT
725516 GGCATCCTTTCATGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
*
725537 GC-TCCTTTCATGCATTTTAATTAT
1 GCATCCTTTCATGC--CTT-A--AT
* *
725561 GAAATCCTTTCATGACTTAAT
1 G-CATCCTTTCATGCCTTAAT
*
725582 GCATCCTTTCATGCATTTTAATT
1 GCATCCTTTCATGC--CTTAA-T
*
725605 ACGGTATCCTTTCATGCCTTAAT
1 ---GCATCCTTTCATGCCTTAAT
* *
725628 GCATCATTTCATGCATTTTAATTAT
1 GCATCCTTTCATGC--CTT-A--AT
*
725653 GGCATCCTTTCACGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
*
725674 GCATCATTTCATGC
1 GCATCCTTTCATGC
725688 ATTTTAATTA
Statistics
Matches: 151, Mismatches: 21, Indels: 52
0.67 0.09 0.23
Matches are distributed among these distances:
19 11 0.07
20 49 0.32
21 10 0.07
22 9 0.06
23 6 0.04
24 12 0.08
25 4 0.03
26 38 0.25
27 12 0.08
ACGTcount: A:0.23, C:0.24, G:0.11, T:0.42
Consensus pattern (20 bp):
GCATCCTTTCATGCCTTAAT
Found at i:725620 original size:26 final size:25
Alignment explanation
Indices: 725539--725664 Score: 83
Period size: 26 Copynumber: 5.3 Consensus size: 25
725529 GCCTTAATGC
*
725539 TCCTTTCATGCATTTTAATTATGAAA
1 TCCTTTCATGCATTTTAATTA-GGAA
* *
725565 TCCTTTCATG-A-CTTAA-T--GCA
1 TCCTTTCATGCATTTTAATTAGGAA
*
725585 TCCTTTCATGCATTTTAATTACGGTA
1 TCCTTTCATGCATTTTAATTA-GGAA
* *
725611 TCCTTTCATGC--CTTAA-T--GCA
1 TCCTTTCATGCATTTTAATTAGGAA
* *
725631 TCATTTCATGCATTTTAATTATGGCA
1 TCCTTTCATGCATTTTAATTA-GGAA
725657 TCCTTTCA
1 TCCTTTCA
725665 CGCCTTAATG
Statistics
Matches: 78, Mismatches: 10, Indels: 24
0.70 0.09 0.21
Matches are distributed among these distances:
20 23 0.29
21 1 0.01
22 8 0.10
23 4 0.05
24 8 0.10
25 1 0.01
26 33 0.42
ACGTcount: A:0.25, C:0.21, G:0.10, T:0.44
Consensus pattern (25 bp):
TCCTTTCATGCATTTTAATTAGGAA
Found at i:725684 original size:138 final size:138
Alignment explanation
Indices: 725430--725699 Score: 418
Period size: 138 Copynumber: 2.0 Consensus size: 138
725420 TATGGTCTCT
* *
725430 TTTCATACATTAATACATCCATTCATACTTTTTAATTATGGCATCCTTTCATGCCTTAATGCATC
1 TTTCATACATTAATACATCCATTCATACATTTTAATTACGGCATCCTTTCATGCCTTAATGCATC
* * * *
725495 CTTTCATGGATTTTCAATTATGGCATCCTTTCATGCCTTAATGCTCCTTTCATGCATTTTAATTA
66 ATTTCATGCATTTTCAATTATGGCATCCTTTCACGCCTTAATGCTCATTTCATGCATTTTAATTA
725560 TGAAATCC
131 TGAAATCC
* * * *
725568 TTTCATGAC-TTAATGCATCCTTTCATGCATTTTAATTACGGTATCCTTTCATGCCTTAATGCAT
1 TTTCAT-ACATTAATACATCCATTCATACATTTTAATTACGGCATCCTTTCATGCCTTAATGCAT
725632 CATTTCATGCATTTT-AATTATGGCATCCTTTCACGCCTTAATGCATCATTTCATGCATTTTAAT
65 CATTTCATGCATTTTCAATTATGGCATCCTTTCACGCCTTAATGC-TCATTTCATGCATTTTAAT
725696 TATG
129 TATG
725700 GATTCGATTT
Statistics
Matches: 120, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
137 28 0.23
138 90 0.75
139 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.10, T:0.44
Consensus pattern (138 bp):
TTTCATACATTAATACATCCATTCATACATTTTAATTACGGCATCCTTTCATGCCTTAATGCATC
ATTTCATGCATTTTCAATTATGGCATCCTTTCACGCCTTAATGCTCATTTCATGCATTTTAATTA
TGAAATCC
Found at i:726294 original size:20 final size:19
Alignment explanation
Indices: 726269--726320 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 19
726259 GTCTTGGAAT
726269 GGTATCGATATCTTCCCT-TC
1 GGTATCGATA-C-TCCCTCTC
726289 GGTATCGATACTCCCTCGTC
1 GGTATCGATACTCCCTC-TC
726309 GGTATCGATACT
1 GGTATCGATACT
726321 GATTCAATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
18 5 0.17
19 1 0.03
20 24 0.80
ACGTcount: A:0.17, C:0.29, G:0.19, T:0.35
Consensus pattern (19 bp):
GGTATCGATACTCCCTCTC
Found at i:727564 original size:8 final size:8
Alignment explanation
Indices: 727551--727587 Score: 56
Period size: 8 Copynumber: 4.5 Consensus size: 8
727541 TAATTTATAC
727551 ATATGTAT
1 ATATGTAT
727559 ATATGTAT
1 ATATGTAT
727567 ATATGTAT
1 ATATGTAT
*
727575 GTATGTAT
1 ATATGTAT
727583 CATAT
1 -ATAT
727588 ACATATTCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
8 23 0.88
9 3 0.12
ACGTcount: A:0.35, C:0.03, G:0.14, T:0.49
Consensus pattern (8 bp):
ATATGTAT
Found at i:731430 original size:21 final size:21
Alignment explanation
Indices: 731404--731480 Score: 82
Period size: 21 Copynumber: 3.6 Consensus size: 21
731394 ATATAGAATG
731404 TCCCGAAGGACCACATATATA
1 TCCCGAAGGACCACATATATA
* * *
731425 TCCCGAAGGACCGCTTAGAATTA
1 TCCCGAAGGACCACATA-TA-TA
** *
731448 TCCCGAAATACCACATATATG
1 TCCCGAAGGACCACATATATA
731469 TCCCGAAGGACC
1 TCCCGAAGGACC
731481 GTGGAGAACC
Statistics
Matches: 43, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
21 26 0.60
22 2 0.05
23 15 0.35
ACGTcount: A:0.34, C:0.30, G:0.17, T:0.19
Consensus pattern (21 bp):
TCCCGAAGGACCACATATATA
Found at i:738662 original size:21 final size:21
Alignment explanation
Indices: 738638--738707 Score: 95
Period size: 21 Copynumber: 3.2 Consensus size: 21
738628 AAAAGTCCTG
738638 AAGGACCACATATATGTCCCA
1 AAGGACCACATATATGTCCCA
* *
738659 AAGGACCACGTAGAATTGTCCCA
1 AAGGACCACATA-TA-TGTCCCA
*
738682 AAGGACTACATATATGTCCCA
1 AAGGACCACATATATGTCCCA
738703 AAGGA
1 AAGGA
738708 TCGCTTAGAA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
21 23 0.55
22 2 0.05
23 17 0.40
ACGTcount: A:0.39, C:0.24, G:0.19, T:0.19
Consensus pattern (21 bp):
AAGGACCACATATATGTCCCA
Found at i:740795 original size:18 final size:18
Alignment explanation
Indices: 740774--740811 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
740764 TAAAATAAAC
* *
740774 TATGAATGTTAAATAAGT
1 TATGAATATGAAATAAGT
740792 TATGAATATGAAATAAGT
1 TATGAATATGAAATAAGT
740810 TA
1 TA
740812 GGAGTCTGAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.16, T:0.37
Consensus pattern (18 bp):
TATGAATATGAAATAAGT
Found at i:740993 original size:39 final size:39
Alignment explanation
Indices: 740934--741016 Score: 130
Period size: 39 Copynumber: 2.1 Consensus size: 39
740924 AAAAATAATA
* *
740934 TGATATGACTATTATATATGATATTGTTTATCATTGCTT
1 TGATATGACTATTATATATGATATTATTTATCATGGCTT
* *
740973 TGATATGACTATTATGTATGATATTATTTATCATGGTTT
1 TGATATGACTATTATATATGATATTATTTATCATGGCTT
741012 TGATA
1 TGATA
741017 AAATCATGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.29, C:0.06, G:0.14, T:0.51
Consensus pattern (39 bp):
TGATATGACTATTATATATGATATTATTTATCATGGCTT
Found at i:740996 original size:18 final size:18
Alignment explanation
Indices: 740932--740996 Score: 58
Period size: 18 Copynumber: 3.4 Consensus size: 18
740922 TGAAAAATAA
*
740932 TATGATATGACTATTATA
1 TATGATATGACTATTATG
** *
740950 TATGATATTGTTTATCATTG
1 TATGATA-TGACTATTA-TG
*
740970 CTTTGATATGACTATTATG
1 -TATGATATGACTATTATG
740989 TATGATAT
1 TATGATAT
740997 TATTTATCAT
Statistics
Matches: 35, Mismatches: 9, Indels: 6
0.70 0.18 0.12
Matches are distributed among these distances:
18 14 0.40
19 8 0.23
20 7 0.20
21 6 0.17
ACGTcount: A:0.31, C:0.06, G:0.14, T:0.49
Consensus pattern (18 bp):
TATGATATGACTATTATG
Found at i:748276 original size:65 final size:65
Alignment explanation
Indices: 748158--748301 Score: 171
Period size: 65 Copynumber: 2.2 Consensus size: 65
748148 TCTTAGAACC
** * * * * **
748158 ACTCAATTTTCCTAAAACAAAATAATAATGTTACCTTTAGTAGGAGAGGGTTCTCTTCTGAGTCA
1 ACTCAATTTTCCCGAAACAAAATAATAACGTTACCTTTAGAAGAAGAGAGTTCTCCACTGAGTCA
* * * * *
748223 ACTCAATCTTCCCGAAACAAAATAATAGCGTTACCTTTTGAAGAAGCGAGTTCTCCAGTGAGTCA
1 ACTCAATTTTCCCGAAACAAAATAATAACGTTACCTTTAGAAGAAGAGAGTTCTCCACTGAGTCA
748288 ACTCAATTTTCCCG
1 ACTCAATTTTCCCG
748302 TTCTAGTGAA
Statistics
Matches: 65, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.31
Consensus pattern (65 bp):
ACTCAATTTTCCCGAAACAAAATAATAACGTTACCTTTAGAAGAAGAGAGTTCTCCACTGAGTCA
Found at i:750823 original size:4 final size:4
Alignment explanation
Indices: 750814--750956 Score: 151
Period size: 4 Copynumber: 35.8 Consensus size: 4
750804 AATGCTCTAA
* * * * * *
750814 AATG AATG AATG AATG AACG AACG AACG AACG AATG AACG AATG AACG
1 AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG
* * * * *
750862 AATG AACG AATA AATG AATG AATG AATG AACG AATG AACG AATG AACG
1 AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG
* * * *
750910 AATG AACG AATA AACG AATG AACG AATG AATG AATG AATG AATG AAT
1 AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG AAT
750957 ATTGATGTTG
Statistics
Matches: 115, Mismatches: 24, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
4 115 1.00
ACGTcount: A:0.52, C:0.09, G:0.23, T:0.16
Consensus pattern (4 bp):
AATG
Found at i:750956 original size:8 final size:8
Alignment explanation
Indices: 750814--750955 Score: 194
Period size: 8 Copynumber: 17.8 Consensus size: 8
750804 AATGCTCTAA
*
750814 AATGAATG
1 AATGAACG
*
750822 AATGAATG
1 AATGAACG
*
750830 AACGAACG
1 AATGAACG
*
750838 AACGAACG
1 AATGAACG
750846 AATGAACG
1 AATGAACG
750854 AATGAACG
1 AATGAACG
750862 AATGAACG
1 AATGAACG
* *
750870 AATAAATG
1 AATGAACG
*
750878 AATGAATG
1 AATGAACG
750886 AATGAACG
1 AATGAACG
750894 AATGAACG
1 AATGAACG
750902 AATGAACG
1 AATGAACG
750910 AATGAACG
1 AATGAACG
*
750918 AATAAACG
1 AATGAACG
750926 AATGAACG
1 AATGAACG
*
750934 AATGAATG
1 AATGAACG
*
750942 AATGAATG
1 AATGAACG
750950 AATGAA
1 AATGAA
750956 TATTGATGTT
Statistics
Matches: 124, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 124 1.00
ACGTcount: A:0.52, C:0.09, G:0.23, T:0.15
Consensus pattern (8 bp):
AATGAACG
Found at i:751127 original size:66 final size:66
Alignment explanation
Indices: 751056--751337 Score: 413
Period size: 66 Copynumber: 4.3 Consensus size: 66
751046 GGTGCACTTT
* * * *
751056 GGCATAAAAGGTACCACTAATTAAAATTATCGATCAATTTTGATTAATGAATAATGGTGCATTAT
1 GGCATAAAAGGTGCCACTAATGAAAATTATCGATCGATTTTGATTAATGAATAACGGTGCATTAT
751121 C
66 C
* * *
751122 GGCATAAAAGGTGCCACTAATGAAAATTATCGATTGATTTTGATTAATGCATAACGATGCATTAT
1 GGCATAAAAGGTGCCACTAATGAAAATTATCGATCGATTTTGATTAATGAATAACGGTGCATTAT
751187 C
66 C
* * * *
751188 AGCATAAAAGGTGCCACTAATGAAAATTATCGATCGATTTTGATTAATGTATAACAGTGTATTAT
1 GGCATAAAAGGTGCCACTAATGAAAATTATCGATCGATTTTGATTAATGAATAACGGTGCATTAT
751253 C
66 C
* *
751254 GGCATAAAAGGTGCCACTAATGAAAATTATCAATCGATTTTGTTTAAT-ACATAACGGTGCATTA
1 GGCATAAAAGGTGCCACTAATGAAAATTATCGATCGATTTTGATTAATGA-ATAACGGTGCATTA
751318 TC
65 TC
* *
751320 AGCATAAAAGGTGTCACT
1 GGCATAAAAGGTGCCACT
751338 CATGGTATTC
Statistics
Matches: 194, Mismatches: 21, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
66 194 1.00
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (66 bp):
GGCATAAAAGGTGCCACTAATGAAAATTATCGATCGATTTTGATTAATGAATAACGGTGCATTAT
C
Found at i:758100 original size:4 final size:4
Alignment explanation
Indices: 758091--758121 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
758081 ATTGCTCTAA
758091 AATG AATG AATG AATG AATG AATG AATG AAT
1 AATG AATG AATG AATG AATG AATG AATG AAT
758122 ATTGATGTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.23, T:0.26
Consensus pattern (4 bp):
AATG
Found at i:758399 original size:66 final size:66
Alignment explanation
Indices: 758229--758506 Score: 425
Period size: 66 Copynumber: 4.2 Consensus size: 66
758219 GTGCACTTTG
* *
758229 GCATAAAAGGTGCCACTAATGAAAATTATCGATCGAA-TTTGATTAATTCATAAGGGTGCATTAT
1 GCATAAAAGGTGCCACTAATGAAAATTATCGATC-AATTTTGATTAATGCATAACGGTGCATTAT
758293 -A
65 CA
* * * *
758294 GCATAAATGGTGCCATTAATGAAAATTATCGATCGATTTTGATTAATGCATAACAGTGCATTATC
1 GCATAAAAGGTGCCACTAATGAAAATTATCGATCAATTTTGATTAATGCATAACGGTGCATTATC
758359 A
66 A
758360 GCATAAAAGGTGCCACTAATGAAAATTATCGATCAATTTTGATTAATGCATAACGGTGCATTATC
1 GCATAAAAGGTGCCACTAATGAAAATTATCGATCAATTTTGATTAATGCATAACGGTGCATTATC
*
758425 G
66 A
* * * *
758426 GCATAAAAGGTGCCACTAATGAAAATTATCAATCGATTTTGTTTAATGCATAACGGTGCATTATT
1 GCATAAAAGGTGCCACTAATGAAAATTATCGATCAATTTTGATTAATGCATAACGGTGCATTATC
*
758491 G
66 A
758492 GCATAAAAGGTGCCA
1 GCATAAAAGGTGCCA
758507 GTCATGATAT
Statistics
Matches: 196, Mismatches: 15, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
64 1 0.01
65 56 0.29
66 139 0.71
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (66 bp):
GCATAAAAGGTGCCACTAATGAAAATTATCGATCAATTTTGATTAATGCATAACGGTGCATTATC
A
Found at i:760459 original size:6 final size:6
Alignment explanation
Indices: 760448--760565 Score: 155
Period size: 6 Copynumber: 19.7 Consensus size: 6
760438 TGTAAGGTAA
* *
760448 TCTCTC TCTCTC TCTCTC TCTCTC TCTCCC TCTCTC TTTCTC TCTCTC
1 TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC
* * * * *
760496 TCTCCC TCTCTC TCCCTC CCTCTC TCTCCC TCTCTC TCTCTC CCTCTC
1 TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC
* *
760544 TCTCTC TCTCCC TCTCCC TCTC
1 TCTCTC TCTCTC TCTCTC TCTC
760566 CTTGTTCCTC
Statistics
Matches: 97, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 97 1.00
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (6 bp):
TCTCTC
Found at i:760463 original size:10 final size:10
Alignment explanation
Indices: 760448--760565 Score: 155
Period size: 10 Copynumber: 11.8 Consensus size: 10
760438 TGTAAGGTAA
760448 TCTCTCTCTC
1 TCTCTCTCTC
760458 TCTCTCTCTC
1 TCTCTCTCTC
*
760468 TCTCTCTCCC
1 TCTCTCTCTC
*
760478 TCTCTCTTTC
1 TCTCTCTCTC
760488 TCTCTCTCTC
1 TCTCTCTCTC
*
760498 TCCCTCTCTC
1 TCTCTCTCTC
* *
760508 TCCCTCCCTC
1 TCTCTCTCTC
*
760518 TCTCTCCCTC
1 TCTCTCTCTC
760528 TCTCTCTCTC
1 TCTCTCTCTC
*
760538 CCTCTCTCTC
1 TCTCTCTCTC
*
760548 TCTCTCCCTC
1 TCTCTCTCTC
*
760558 TCCCTCTC
1 TCTCTCTC
760566 CTTGTTCCTC
Statistics
Matches: 95, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 95 1.00
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (10 bp):
TCTCTCTCTC
Found at i:760467 original size:14 final size:14
Alignment explanation
Indices: 760448--760565 Score: 155
Period size: 14 Copynumber: 8.4 Consensus size: 14
760438 TGTAAGGTAA
760448 TCTCTCTCTCTCTC
1 TCTCTCTCTCTCTC
760462 TCTCTCTCTCTCTC
1 TCTCTCTCTCTCTC
* *
760476 CCTCTCTCTTTCTC
1 TCTCTCTCTCTCTC
*
760490 TCTCTCTCTCCCTC
1 TCTCTCTCTCTCTC
* *
760504 TCTCTCCCTCCCTC
1 TCTCTCTCTCTCTC
*
760518 TCTCTCCCTCTCTC
1 TCTCTCTCTCTCTC
*
760532 TCTCTCCCTCTCTC
1 TCTCTCTCTCTCTC
*
760546 TCTCTCTCCCTCTC
1 TCTCTCTCTCTCTC
*
760560 CCTCTC
1 TCTCTC
760566 CTTGTTCCTC
Statistics
Matches: 94, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 94 1.00
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (14 bp):
TCTCTCTCTCTCTC
Found at i:762811 original size:24 final size:24
Alignment explanation
Indices: 762784--762829 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
762774 AGATATAGAA
* *
762784 TTTTTATATTTGT-AGTTATGTAT
1 TTTTTTTATTTCTAAGTTATGTAT
*
762807 TTTTTTTCTTTCTAAGTTATGTA
1 TTTTTTTATTTCTAAGTTATGTA
762830 AAATGAACAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.20, C:0.04, G:0.11, T:0.65
Consensus pattern (24 bp):
TTTTTTTATTTCTAAGTTATGTAT
Found at i:763010 original size:19 final size:20
Alignment explanation
Indices: 762966--763010 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
762956 ATTTGTTTTT
*
762966 AATAAATTTTTATCTATGAA
1 AATAAATTTTTATCTATCAA
* *
762986 ATTAAATTTTTAT-TTTCAA
1 AATAAATTTTTATCTATCAA
763005 AATAAA
1 AATAAA
763011 ATATTAAAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (20 bp):
AATAAATTTTTATCTATCAA
Found at i:763652 original size:37 final size:37
Alignment explanation
Indices: 763611--763686 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
763601 ACCACAAAAG
*
763611 CTGAACAGCACCCACGTTCAAGCGGCGGAAAAGTATT
1 CTGAACAGCACCCACGTTCAAGAGGCGGAAAAGTATT
763648 CTGAACAGCACCCACGTTCAAGAGGCGGAAAAGTATT
1 CTGAACAGCACCCACGTTCAAGAGGCGGAAAAGTATT
763685 CT
1 CT
763687 CTGCATTCTG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.33, C:0.26, G:0.24, T:0.17
Consensus pattern (37 bp):
CTGAACAGCACCCACGTTCAAGAGGCGGAAAAGTATT
Found at i:768031 original size:76 final size:77
Alignment explanation
Indices: 767922--768095 Score: 187
Period size: 76 Copynumber: 2.2 Consensus size: 77
767912 TATACACCTA
* * *
767922 GATTCATGCATTATACAACTTAAATTAATGCCTTAA-TCCCA-TCCATTAATGCGGCTCGTGT-A
1 GATTCATGCATTATACAACTTAAATTAAAGCCTTAACT-CCAGT-CATTAACGCGGCTCAT-TCA
767984 TTCACACTTCACTG-
63 TTCACACTTCACTGT
* * * * *
767998 GATTCATGCACTATAC-AGTCTAGATTAAAGCCTTAACTCCAGTCATTAACGTGGCTCATTCGTT
1 GATTCATGCATTATACAACT-TAAATTAAAGCCTTAACTCCAGTCATTAACGCGGCTCATTCATT
768062 CACACTTCACTGTT
65 CACACTTCACTG-T
768076 GAATTCATGCATTATACAAC
1 G-ATTCATGCATTATACAAC
768096 AAAGAATGTG
Statistics
Matches: 80, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
75 3 0.04
76 59 0.74
77 2 0.03
78 1 0.01
79 14 0.17
80 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (77 bp):
GATTCATGCATTATACAACTTAAATTAAAGCCTTAACTCCAGTCATTAACGCGGCTCATTCATTC
ACACTTCACTGT
Found at i:769578 original size:13 final size:13
Alignment explanation
Indices: 769560--769587 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
769550 TTTGACTCTC
769560 AATATTTTATTTA
1 AATATTTTATTTA
769573 AATATTTTATTTA
1 AATATTTTATTTA
769586 AA
1 AA
769588 GTAAAAACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
AATATTTTATTTA
Found at i:771047 original size:22 final size:22
Alignment explanation
Indices: 770979--771073 Score: 77
Period size: 22 Copynumber: 4.3 Consensus size: 22
770969 AACTATATAA
* **
770979 TATATATATATAAAGTGTATAATT
1 TATATATATAT-TA-TGTATAAAC
* *
771003 TATATTTATATTAT-TATATAC
1 TATATATATATTATGTATAAAC
771024 TATATATATATTATGTATAAAC
1 TATATATATATTATGTATAAAC
* * *
771046 TATATAGTTTATTA-ATATGAAC
1 TATATA-TATATTATGTATAAAC
771068 TATATA
1 TATATA
771074 GTGTATATAT
Statistics
Matches: 59, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
21 17 0.29
22 25 0.42
23 7 0.12
24 10 0.17
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.48
Consensus pattern (22 bp):
TATATATATATTATGTATAAAC
Found at i:771057 original size:52 final size:52
Alignment explanation
Indices: 770957--771057 Score: 134
Period size: 52 Copynumber: 1.9 Consensus size: 52
770947 ATGAACTACA
* *
770957 TATATTATGTATAACTATATAATATATATATATAAAGTGTATAATTTATATT
1 TATATTATGTATAACTATATAATATATATATATAAACTATATAATTTATATT
* *
771009 TATATTAT-TATATACTATAT-ATATATTATGTATAAACTATATAGTTTAT
1 TATATTATGTATA-ACTATATAATATA-TATATATAAACTATATAATTTAT
771058 TAATATGAAC
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
51 9 0.21
52 34 0.79
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.50
Consensus pattern (52 bp):
TATATTATGTATAACTATATAATATATATATATAAACTATATAATTTATATT
Found at i:771301 original size:2 final size:2
Alignment explanation
Indices: 771296--771435 Score: 78
Period size: 2 Copynumber: 69.5 Consensus size: 2
771286 TTATATAGTG
* * *
771296 TA TA TA TA AA GTA TA TA TA T- TA TA TA TA TA AA CTA TA TA GTT
1 TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA
* *
771338 TA TA TT TA TA T- TA T- TA TA TA CTA TA TA TA AA CTA TA TA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA -TA TA TA TA TA
* * *
771379 TA TG TA TA AA CTA TA TA -A TT TA T- TA -A TA TA TA CTA TA TA TA
1 TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA
*
771420 AA CTA TA TA TA TA TA T
1 TA -TA TA TA TA TA TA T
771436 TATGTATAAA
Statistics
Matches: 105, Mismatches: 18, Indels: 30
0.69 0.12 0.20
Matches are distributed among these distances:
1 7 0.07
2 88 0.84
3 10 0.10
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.47
Consensus pattern (2 bp):
TA
Found at i:771319 original size:9 final size:9
Alignment explanation
Indices: 771307--771443 Score: 63
Period size: 9 Copynumber: 14.9 Consensus size: 9
771297 ATATATAAAG
771307 TATATATAT
1 TATATATAT
771316 TATATATAT
1 TATATATAT
*
771325 AAACTATATAGT
1 -TA-TATATA-T
771337 T-TATAT-T
1 TATATATAT
771344 TATAT-TAT
1 TATATATAT
771352 TATATACTA-
1 TATATA-TAT
* *
771361 TATATAAAC
1 TATATATAT
771370 TATATATAT
1 TATATATAT
*
771379 TATGTATA-
1 TATATATAT
*
771387 AACTATATAAT
1 TA-TATAT-AT
*
771398 T-TAT-TAA
1 TATATATAT
771405 TATATACTAT
1 TATATA-TAT
*
771415 ATATAAACTAT
1 -TATATA-TAT
771426 ATATATATAT
1 -TATATATAT
*
771436 TATGTATA
1 TATATATA
771444 AACTATTCAT
Statistics
Matches: 99, Mismatches: 14, Indels: 30
0.69 0.10 0.21
Matches are distributed among these distances:
7 5 0.05
8 15 0.15
9 48 0.48
10 9 0.09
11 21 0.21
12 1 0.01
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.48
Consensus pattern (9 bp):
TATATATAT
Found at i:771377 original size:20 final size:20
Alignment explanation
Indices: 771296--772142 Score: 224
Period size: 20 Copynumber: 41.9 Consensus size: 20
771286 TTATATAGTG
*
771296 TATATATAAAGTATATATATT
1 TATATATAAACTATATATA-T
771317 ATATATATAAACTATATAGT-T
1 -TATATATAAACTATATA-TAT
* * * *
771338 TATATTTATATTATTATATAC
1 TATATATAAACTA-TATATAT
771359 TATATATAAACTATATATAT
1 TATATATAAACTATATATAT
*
771379 TATGTATAAACTATATA-AT
1 TATATATAAACTATATATAT
*
771398 T-TAT-T--A--ATATATAC
1 TATATATAAACTATATATAT
771412 TATATATAAACTATATATAT
1 TATATATAAACTATATATAT
*
771432 ATATTATGTATAAACTAT-TCATAC
1 -TA-TA--TATAAACTATAT-ATAT
* * *
771456 CATGTATAAACTATAGAGT-T
1 TATATATAAACTATATA-TAT
*
771476 TATATATGAACTAT-TGA-AT
1 TATATATAAACTATAT-ATAT
*
771495 TATATATAAACTCTATAGT-T
1 TATATATAAACTATATA-TAT
*
771515 TATTAATATAAATTATATAGT-T
1 TA-T-ATATAAACTATATA-TAT
*
771537 TATATATAAATTATATATGAAT
1 TATATATAAACTATATAT--AT
* *
771559 TATATTTAAA-TATATACAACT
1 TATATATAAACTATATA-TA-T
* ** *
771580 TATAT-TTATTTATTATGTAT
1 TATATATAAACTA-TATATAT
* * *
771600 AAT-TATAAATTATATATAC
1 TATATATAAACTATATATAT
* * *
771619 TATGTATAAATTATATATTT
1 TATATATAAACTATATATAT
771639 TATTAATATAAACTATATATA-
1 TA-T-ATATAAACTATATATAT
** * *
771660 -AGCTATAAATTATATATAC
1 TATATATAAACTATATATAT
* *
771679 TATGTATAAAATATATAGT-T
1 TATATATAAACTATATA-TAT
* *
771699 TAAATATAAAGTATATA-AGT
1 TATATATAAACTATATATA-T
771719 ATATATATAAACTATA-A-AT
1 -TATATATAAACTATATATAT
*
771738 TATATATATACATATACATATAT
1 TATATATAAAC-TAT--ATATAT
* *
771761 AATAATATAAAGTATAAGTATAT
1 TAT-ATATAAACTAT-A-TATAT
* *
771784 TATATATATA-TATAAAGTAT
1 TATATATAAACTATATA-TAT
*
771804 AAT-TATAAAGACTAACGTATATAAGT
1 TATATAT-AA-ACT-A--TATAT-A-T
* *
771830 ATATAATATAAAGTATATACA-
1 -TAT-ATATAAACTATATATAT
* *
771851 TATA-AGTATAAGTATGTATA-
1 TATATA-TA-AACTATATATAT
*
771871 TATATATATA-TATATACT-T
1 TATATATAAACTATATA-TAT
* *
771890 TATATTTAATACTTATATATTT
1 TATATATAA-AC-TATATATAT
*
771912 TATATTATATACT-TATATACTT
1 TATA-TATAAACTATATATA--T
**
771934 TATATTATATGCT-TATATAT
1 TATA-TATAAACTATATATAT
*
771954 T-T-TAGT---CTTTATA-AT
1 TATATA-TAAACTATATATAT
* * *
771969 TATACTTTACA-TATATATAA
1 TATA-TATAAACTATATATAT
* *
771989 TATACT-TATACTTTATATTAT
1 TATA-TATAAACTATATA-TAT
* **
772010 TACATATGTA-TATATACT-T
1 TATATATAAACTATATA-TAT
* *
772029 TAAACTA-AAACTTTATATAT
1 TATA-TATAAACTATATATAT
*
772049 TATATATATA-TATATATA-
1 TATATATAAACTATATATAT
*
772067 TATATATATA-TATATATAT
1 TATATATAAACTATATATAT
*
772086 ATATATATATA-TATATATAT
1 -TATATATAAACTATATATAT
*
772106 ATATATATATA-TATATATAT
1 -TATATATAAACTATATATAT
* *
772126 TAAATATAAAGTATATA
1 TATATATAAACTATATA
772143 AGTATATAGT
Statistics
Matches: 636, Mismatches: 98, Indels: 184
0.69 0.11 0.20
Matches are distributed among these distances:
13 5 0.01
14 2 0.00
15 9 0.01
16 6 0.01
17 4 0.01
18 53 0.08
19 78 0.12
20 249 0.39
21 66 0.10
22 103 0.16
23 22 0.03
24 24 0.04
25 4 0.01
26 2 0.00
27 4 0.01
28 2 0.00
29 3 0.00
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.46
Consensus pattern (20 bp):
TATATATAAACTATATATAT
Found at i:771424 original size:11 final size:11
Alignment explanation
Indices: 771296--771449 Score: 72
Period size: 11 Copynumber: 14.3 Consensus size: 11
771286 TTATATAGTG
*
771296 TATATATAAAG
1 TATATATAAAC
*
771307 TATATATATTA-
1 TATATATA-AAC
771318 TATATATAAAC
1 TATATATAAAC
*
771329 TATATAGT---T
1 TATATA-TAAAC
* * *
771338 TATATTTATAT
1 TATATATAAAC
*
771349 TAT-TATATAC
1 TATATATAAAC
771359 TATATATAAAC
1 TATATATAAAC
*
771370 TATATAT--AT
1 TATATATAAAC
*
771379 TATGTATAAAC
1 TATATATAAAC
** *
771390 TATATAATTTAT
1 TATAT-ATAAAC
*
771402 TA-ATATATAC
1 TATATATAAAC
771412 TATATATAAAC
1 TATATATAAAC
*
771423 TATATATATATAT
1 TATATATA-A-AC
*
771436 TATGTATAAAC
1 TATATATAAAC
771447 TAT
1 TAT
771450 TCATACCATG
Statistics
Matches: 110, Mismatches: 20, Indels: 26
0.71 0.13 0.17
Matches are distributed among these distances:
8 1 0.01
9 12 0.11
10 15 0.14
11 65 0.59
12 9 0.08
13 8 0.07
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.47
Consensus pattern (11 bp):
TATATATAAAC
Found at i:771446 original size:24 final size:24
Alignment explanation
Indices: 771404--771449 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
771394 TAATTTATTA
771404 ATATATACTATATATAAACTATAT
1 ATATATACTATATATAAACTATAT
* *
771428 ATATATATTATGTATAAACTAT
1 ATATATACTATATATAAACTAT
771450 TCATACCATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (24 bp):
ATATATACTATATATAAACTATAT
Found at i:771574 original size:21 final size:22
Alignment explanation
Indices: 771536--771587 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
771526 ATTATATAGT
* *
771536 TTATATATAAATTATATATGAA-
1 TTATATTTAAATTATATA-CAAC
771558 TTATATTTAAA-TATATACAAC
1 TTATATTTAAATTATATACAAC
771579 TTATATTTA
1 TTATATTTA
771588 TTTATTATGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 2 0.07
21 15 0.56
22 10 0.37
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (22 bp):
TTATATTTAAATTATATACAAC
Found at i:771574 original size:30 final size:32
Alignment explanation
Indices: 771538--771616 Score: 85
Period size: 32 Copynumber: 2.5 Consensus size: 32
771528 TATATAGTTT
*
771538 ATATATAAATTATATATGAATTA-TATTTA-A
1 ATATATAAATTATATATGAATTATTATGTATA
* *
771568 ATATATACAACTTATAT-TTATTTATTATGTATA
1 ATATATA-AA-TTATATATGAATTATTATGTATA
771601 AT-TATAAATTATATAT
1 ATATATAAATTATATAT
771617 ACTATGTATA
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
30 13 0.32
31 10 0.24
32 15 0.37
33 3 0.07
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (32 bp):
ATATATAAATTATATATGAATTATTATGTATA
Found at i:771677 original size:11 final size:11
Alignment explanation
Indices: 771492--771660 Score: 72
Period size: 11 Copynumber: 16.1 Consensus size: 11
771482 TGAACTATTG
771492 AATTATATATA
1 AATTATATATA
* * *
771503 AACTCTATAGTT
1 AATTATATA-TA
*
771515 TATTA-ATATA
1 AATTATATATA
771525 AATTATATAGT-
1 AATTATATA-TA
771536 --TTATATATA
1 AATTATATATA
*
771545 AATTATATATG
1 AATTATATATA
*
771556 AATTATATTTA
1 AATTATATATA
*
771567 AA-TATATACA
1 AATTATATATA
* *
771577 ACTTATAT-TT
1 AATTATATATA
* *
771587 ATTTAT-TATG
1 AATTATATATA
* *
771597 TATAAT-TATA
1 AATTATATATA
771607 AATTATATAT-
1 AATTATATATA
* *
771617 -ACTATGTATA
1 AATTATATATA
*
771627 AATTATATATTT
1 AATTATATA-TA
*
771639 TATTA-ATATA
1 AATTATATATA
*
771649 AACTATATATA
1 AATTATATATA
771660 A
1 A
771661 GCTATAAATT
Statistics
Matches: 112, Mismatches: 33, Indels: 26
0.65 0.19 0.15
Matches are distributed among these distances:
8 1 0.01
9 15 0.13
10 32 0.29
11 55 0.49
12 9 0.08
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.48
Consensus pattern (11 bp):
AATTATATATA
Found at i:771734 original size:68 final size:70
Alignment explanation
Indices: 771652--771846 Score: 188
Period size: 70 Copynumber: 2.8 Consensus size: 70
771642 TAATATAAAC
* ** * *
771652 TATATATAAGCTATAAATTATATATACTATGTATA-AAATAT-ATAGTTTAAA-TATAAAGTATA
1 TATATATAAACTATAAATTATATATA-TACATATACAAATATAATAATATAAAGTAT-AAGTATA
771714 -TA-AGTA
64 TTATA-TA
*
771720 TATATATAAACTATAAATTATATATATACATATACATATATAATAATATAAAGTATAAGTATATT
1 TATATATAAACTATAAATTATATATATACATATACAAATATAATAATATAAAGTATAAGTATATT
771785 ATATA
66 ATATA
* * * * * *
771790 TATATATAAAGTAT-AATTATAAAGACTAACGTATATAAGTAT-ATAATATAAAGTATA
1 TATATATAAACTATAAATTATATATA-T-ACATATACAAATATAATAATATAAAGTATA
771847 TACATATAAG
Statistics
Matches: 107, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
67 6 0.06
68 30 0.28
69 24 0.22
70 36 0.34
71 11 0.10
ACGTcount: A:0.52, C:0.04, G:0.06, T:0.38
Consensus pattern (70 bp):
TATATATAAACTATAAATTATATATATACATATACAAATATAATAATATAAAGTATAAGTATATT
ATATA
Found at i:771759 original size:18 final size:18
Alignment explanation
Indices: 771597--771810 Score: 75
Period size: 18 Copynumber: 11.9 Consensus size: 18
771587 ATTTATTATG
771597 TATAATTATAAATTATATA
1 TATAA-TATAAATTATATA
*
771616 TACTATGTATAAATTATATA
1 TA-TA-ATATAAATTATATA
*
771636 TTTTATTAATATAAACTATATA
1 ---TA-TAATATAAATTATATA
*
771658 TA-AGCTATAAATTATATA
1 TATA-ATATAAATTATATA
*
771676 TACTATGTATAAA--ATATA
1 TA-TA-ATATAAATTATATA
771694 TAGT--T-TAAA-TATA-A
1 TA-TAATATAAATTATATA
*
771708 -AGT-ATAT-AAGTATATA
1 TA-TAATATAAATTATATA
771724 TATAAACTATAAATTATATA
1 TAT-AA-TATAAATTATATA
*
771744 TATACATATACA-TATATA
1 TATA-ATATAAATTATATA
*
771762 -ATAATATAAAGTATA-A
1 TATAATATAAATTATATA
* *
771778 GTATATTATATA-TATATA
1 -TATAATATAAATTATATA
771796 TA-AAGTAT-AATTATA
1 TATAA-TATAAATTATA
771811 AAGACTAACG
Statistics
Matches: 154, Mismatches: 16, Indels: 52
0.69 0.07 0.23
Matches are distributed among these distances:
13 3 0.02
14 8 0.05
15 9 0.06
16 11 0.07
17 22 0.14
18 38 0.25
19 13 0.08
20 34 0.22
22 12 0.08
23 4 0.03
ACGTcount: A:0.50, C:0.03, G:0.04, T:0.42
Consensus pattern (18 bp):
TATAATATAAATTATATA
Found at i:771854 original size:63 final size:67
Alignment explanation
Indices: 771644--771854 Score: 172
Period size: 68 Copynumber: 3.1 Consensus size: 67
771634 TATTTTATTA
* * ** * * *
771644 ATATAA-ACTATATATAAGCTATAAATTATATATACTATGTATA-AAATAT-ATAGTTTAAATAT
1 ATATAATA-TATATATAAACTATAAATTATATATA-GACATATACATATATAATAATAT-AATAT
771706 AAAGT
63 AAAGT
*
771711 ATATAAGTATATATATAAACTATAAATTATATATATACATATACATATATAATAATATAA-AGTA
1 ATATAA-TATATATATAAACTATAAATTATATATAGACATATACATATATAATAATATAATA-TA
771775 TAAGT
64 -AAGT
* *
771780 ATATTATATATATATATAAAGTAT-AATTATA-A-AGAC-TA-ACGTATATAAGT-ATATAATAT
1 ATA-TA-ATATATATATAAACTATAAATTATATATAGACATATACATATATAA-TAATATAATAT
771839 AAAGT
63 AAAGT
771844 ATATACATATA
1 ATATA-ATATA
771855 AGTATAAGTA
Statistics
Matches: 124, Mismatches: 10, Indels: 24
0.78 0.06 0.15
Matches are distributed among these distances:
63 7 0.06
64 7 0.06
65 17 0.14
66 4 0.03
67 16 0.13
68 35 0.28
69 20 0.16
70 17 0.14
71 1 0.01
ACGTcount: A:0.52, C:0.04, G:0.06, T:0.38
Consensus pattern (67 bp):
ATATAATATATATATAAACTATAAATTATATATAGACATATACATATATAATAATATAATATAAA
GT
Found at i:771930 original size:44 final size:45
Alignment explanation
Indices: 771867--772116 Score: 192
Period size: 44 Copynumber: 5.4 Consensus size: 45
771857 TATAAGTATG
771867 TATATATATATATATATATACTTTATATT-TAATACTTATATATTT
1 TATATATATATATATATATACTTTATATTAT-ATACTTATATATTT
*
771912 TATAT-TATATACT-TATATACTTTATATTATATGCTTATATATTT
1 TATATATATATA-TATATATACTTTATATTATATACTTATATATTT
* * * * * *
771956 TAGTCTTTATA-ATTATACTTTACATATATATAATATACTTATACT-TTA
1 TA-TATATATATA-TATA-TATAC-TTTATATTATATACTTATA-TATTT
* * * * * *
772004 TATTATTACATATGTATATATACTTTAAACTA-AAACTTTATATATTA
1 TA-TA-TATATATATATATATACTTTATATTATATAC-TTATATATTT
* *
772051 TATATATATATATATATATA-TATATATATATATA-TATATATATATA
1 TATATATATATATATATATACTTTATAT-TATATACT-TATATAT-TT
772097 TATATATATATATATATATA
1 TATATATATATATATATATA
772117 TATATATATT
Statistics
Matches: 164, Mismatches: 25, Indels: 31
0.75 0.11 0.14
Matches are distributed among these distances:
44 41 0.25
45 34 0.21
46 36 0.22
47 19 0.12
48 25 0.15
49 9 0.05
ACGTcount: A:0.42, C:0.06, G:0.01, T:0.52
Consensus pattern (45 bp):
TATATATATATATATATATACTTTATATTATATACTTATATATTT
Found at i:772142 original size:2 final size:2
Alignment explanation
Indices: 771670--772125 Score: 162
Period size: 2 Copynumber: 230.5 Consensus size: 2
771660 AGCTATAAAT
* * * * *
771670 TA TA TA TA CTA TG TA TA -A AA TA TA TA GTT TA AA TA TA AA GTA
1 TA TA TA TA -TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA -TA
* * *
771712 TA TA -A GTA TA TA TA TA AA CTA TA AA T- TA TA TA TA TA CA TA TA
1 TA TA TA -TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA
* *
771754 CA TA TA TA -A TA -A TA TA AA GTA TA -A GTA TA T- TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA TA TA
* * * **
771794 TA TA AA GTA TA -A T- TA TA AA GA CTA -A CG TA TA TA -A GTA TA
1 TA TA TA -TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA -TA TA
* * *
771833 TA -A TA TA AA GTA TA TA CA TA TA -A GTA TA -A GTA TG TA TA TA
1 TA TA TA TA TA -TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA
* * *
771873 TA TA TA TA TA TA TA CTT TA TA TT TA -A TA CT- TA TA TA T- TT TA
1 TA TA TA TA TA TA TA -TA TA TA TA TA TA TA -TA TA TA TA TA TA TA
* *
771914 TA T- TA TA TA CT- TA TA TA CTT TA TA T- TA TA TGC T- TA TA TA
1 TA TA TA TA TA -TA TA TA TA -TA TA TA TA TA TA T-A TA TA TA TA
* * * * *
771953 T- TT TA GTC TT TA TA -A T- TA TA CTT TA CA TA TA TA TA -A TA TA
1 TA TA TA -TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA
* * * * *
771993 CT- TA TA CTT TA TA T- TA T- TA CA TA TG TA TA TA TA CTT TA AA
1 -TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA
* *
772033 CTA -A AA CTT TA TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA
1 -TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
772075 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
772117 TA TA TA TA T
1 TA TA TA TA T
772126 TAAATATAAA
Statistics
Matches: 337, Mismatches: 62, Indels: 110
0.66 0.12 0.22
Matches are distributed among these distances:
1 30 0.09
2 282 0.84
3 25 0.07
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.46
Consensus pattern (2 bp):
TA
Found at i:773330 original size:15 final size:15
Alignment explanation
Indices: 773312--773350 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
773302 TTAAAGGACA
773312 GAAAAATAAAGTACT
1 GAAAAATAAAGTACT
* *
773327 G-AAATTAAAGTGCT
1 GAAAAATAAAGTACT
773341 GAAAAATAAA
1 GAAAAATAAA
773351 TAAATAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.59, C:0.05, G:0.15, T:0.21
Consensus pattern (15 bp):
GAAAAATAAAGTACT
Found at i:774173 original size:25 final size:25
Alignment explanation
Indices: 774138--774187 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
774128 ACAAGGTAAT
* *
774138 GTGCTGGTGAGTGGAGCATGGGCTG
1 GTGCTGATGAGTAGAGCATGGGCTG
774163 GTGCTGATGAGTAGAGCATGGGCTG
1 GTGCTGATGAGTAGAGCATGGGCTG
774188 ATGACAGGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.16, C:0.12, G:0.48, T:0.24
Consensus pattern (25 bp):
GTGCTGATGAGTAGAGCATGGGCTG
Found at i:776546 original size:14 final size:14
Alignment explanation
Indices: 776527--776607 Score: 71
Period size: 14 Copynumber: 5.9 Consensus size: 14
776517 TTTTTCCTGG
*
776527 TTATAAATATTATA
1 TTATAATTATTATA
776541 TTATAATTATTACTA
1 TTATAATTATTA-TA
776556 TTAT-ATTA-T-TA
1 TTATAATTATTATA
*
776567 TTAT-ATTATTGTTA
1 TTATAATTATT-ATA
**
776581 TTATAACAATTATA
1 TTATAATTATTATA
*
776595 TTATAATAATTAT
1 TTATAATTATTAT
776608 TAGTATTATT
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
11 10 0.18
12 1 0.02
13 1 0.02
14 35 0.61
15 10 0.18
ACGTcount: A:0.42, C:0.02, G:0.01, T:0.54
Consensus pattern (14 bp):
TTATAATTATTATA
Found at i:776562 original size:11 final size:11
Alignment explanation
Indices: 776534--776597 Score: 51
Period size: 11 Copynumber: 5.9 Consensus size: 11
776524 TGGTTATAAA
776534 TATTATATTA-
1 TATTATATTAC
*
776544 TAAT-TATTAC
1 TATTATATTAC
*
776554 TATTATATTAT
1 TATTATATTAC
*
776565 TATTATATTAT
1 TATTATATTAC
* *
776576 TGTTATTATAAC
1 TATTA-TATTAC
*
776588 AATTATATTA
1 TATTATATTA
776598 TAATAATTAT
Statistics
Matches: 42, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
9 5 0.12
10 6 0.14
11 24 0.57
12 7 0.17
ACGTcount: A:0.39, C:0.03, G:0.02, T:0.56
Consensus pattern (11 bp):
TATTATATTAC
Found at i:776565 original size:3 final size:3
Alignment explanation
Indices: 776534--776618 Score: 61
Period size: 3 Copynumber: 29.7 Consensus size: 3
776524 TGGTTATAAA
* * *
776534 TAT TA- TAT TAT AAT TAT TAC TAT TA- TAT TAT TAT TA- TAT TAT TGT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * *
776579 TAT TAT AAC AAT TA- TAT TAT AAT AAT TAT TAG TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
776619 ATAATATCAT
Statistics
Matches: 64, Mismatches: 14, Indels: 8
0.74 0.16 0.09
Matches are distributed among these distances:
2 8 0.12
3 56 0.88
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (3 bp):
TAT
Found at i:786418 original size:11 final size:10
Alignment explanation
Indices: 786404--786436 Score: 57
Period size: 10 Copynumber: 3.2 Consensus size: 10
786394 AAAAAAAAGG
786404 AAAAAATGAGA
1 AAAAAATGA-A
786415 AAAAAATGAA
1 AAAAAATGAA
786425 AAAAAATGAA
1 AAAAAATGAA
786435 AA
1 AA
786437 GTGAAAAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.79, C:0.00, G:0.12, T:0.09
Consensus pattern (10 bp):
AAAAAATGAA
Found at i:786436 original size:17 final size:17
Alignment explanation
Indices: 786415--786467 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
786405 AAAAATGAGA
786415 AAAAAATGAAAAAAAAT
1 AAAAAATGAAAAAAAAT
* * *
786432 GAAAAGTG-AAAAAGAT
1 AAAAAATGAAAAAAAAT
786448 AAAATAATG-AAAAAAAT
1 AAAA-AATGAAAAAAAAT
786465 AAA
1 AAA
786468 TAAAAGGGGG
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
16 10 0.34
17 19 0.66
ACGTcount: A:0.75, C:0.00, G:0.11, T:0.13
Consensus pattern (17 bp):
AAAAAATGAAAAAAAAT
Found at i:787511 original size:55 final size:55
Alignment explanation
Indices: 787446--787907 Score: 730
Period size: 55 Copynumber: 8.4 Consensus size: 55
787436 TTAAAGCATC
* *
787446 AAGATTGTTCGAGTCTTATACTCTTTGAAGGAATAAGGAGCAGACACGATTGTTG
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
* * * *
787501 AAGATTGTTCGAGTCTTATACTCTCTTAAGGAATAAGGACCAGACACGATTGTTA
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
* * *
787556 AAGATTGTTCGAGTCTTATACACTCTAAAAGAATAGGGAGCAGACACGATTGTTG
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
* * *
787611 AAGATTATTCGAGTCTTATACTCTCTGAATGAATAGGGAGCAGACATGATTGTTG
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
*
787666 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAAACACGATTGTTG
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
* *
787721 AAGATTATTCGCGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
* *
787776 AAGATTGTTCGAGTCTTATACTCTCTAAAGGAATAGGGAGCAGACACGATTTTTG
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
* *
787831 AAGATTGTTCAAGTCTTATACTCTTTGAAGGAATAGGGAGCAGACACGATTGTTG
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
787886 AAGA-TGTTCGAGT-TCTATACTC
1 AAGATTGTTCGAGTCT-TATACTC
787908 CCTAAAGAAA
Statistics
Matches: 375, Mismatches: 31, Indels: 3
0.92 0.08 0.01
Matches are distributed among these distances:
53 1 0.00
54 15 0.04
55 359 0.96
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.31
Consensus pattern (55 bp):
AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
Found at i:787979 original size:110 final size:109
Alignment explanation
Indices: 787500--788314 Score: 600
Period size: 110 Copynumber: 7.4 Consensus size: 109
787490 CACGATTGTT
* * * * * * *
787500 GAAGATTGTTCGAGTCTTATACTCTCTTAAGGAAT-AAGGACCAGACACGATTGTTA-AAGATTG
1 GAAGATTATTCGAGTTTTATACTCCCTGAAAGAATGAGGGAGCAGACACG-TTG-TAGAAGATTG
* * * * * **
787563 TTCGAG-TCTTATACACTCTAAA-AGAATAGGGAGC-AGACACGATTGTT
64 TTCGAGTTC-TATACTCCCTAAAGA-AAGAGGGAGCGA-ACCCG-TAGCA
* * * * *
787610 GAAGATTATTCGAGTCTTATACTCTCTGAATGAAT-AGGGAGCAGACATGATTGTTGAAGATTGT
1 GAAGATTATTCGAGTTTTATACTCCCTGAAAGAATGAGGGAGCAGACACG-TTGTAGAAGATTGT
* * * * * * * **
787674 TCGAG-TCTTATACTCTCTGAAGGAATAGGGAGCAAACACGATTGTT
65 TCGAGTTC-TATACTCCCTAAAGAAAGAGGGAGCGAACCCG-TAGCA
* * * * *
787720 GAAGATTATTCGCGTCTTATACTCTCTGAAGGAAT-AGGGAGCAGACACGATTGTTGAAGATTGT
1 GAAGATTATTCGAGTTTTATACTCCCTGAAAGAATGAGGGAGCAGACACG-TTGTAGAAGATTGT
* * * * ****
787784 TCGAG-TCTTATACTCTCTAAAGGAATAGGGAGC-AGACACGATTTTT
65 TCGAGTTC-TATACTCCCTAAAGAAAGAGGGAGCGA-ACCCG-TAGCA
* * * ** * *
787830 GAAGATTGTTCAAGTCTTATACTCTTTGAAGGAAT-AGGGAGCAGACACGATTGTTGAAGA-TGT
1 GAAGATTATTCGAGTTTTATACTCCCTGAAAGAATGAGGGAGCAGACACG-TTGTAGAAGATTGT
* *
787893 TCGAGTTCTATACTCCCTAAAGAAAGAGGGGGCGAACCCGTAGGAA
65 TCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCCGTA-GCA
* * * *
787939 GAAGATTATTCGAGTTTTGTACTCCCTGAAAGAATGAGGGAGC-GAACCCGTTAGCAGAAGATTA
1 GAAGATTATTCGAGTTTTATACTCCCTGAAAGAATGAGGGAGCAG-ACACGTT-GTAGAAGATTG
788003 TTCGAGTTCTATACTCCCTGAAAGAAAGAGGGAGCGAACCCGTTAGCA
64 TTCGAGTTCTATACTCCCT-AAAGAAAGAGGGAGCGAACCCG-TAGCA
* * * * * * * *
788051 GAAGATTATTCGAGTTCTATACTCCCTGAGAGAAAGAGGGAGCAAACCCGTAGAGAGAAGATTAT
1 GAAGATTATTCGAGTTTTATACTCCCTGAAAGAATGAGGGAGCAGACACGTTG-TAGAAGATTGT
* * * *
788116 TCGAGTTCTATACTCCCAGAAAGAAAGAGGGATCAAAACCGTTAGCA
65 TCGAGTTCTATACTCCC-TAAAGAAAGAGGGAGCGAACCCG-TAGCA
* * * *
788163 GAAGATTATTC-AGTTTTATACTCCCTGAAAGAAAGAGGGAGC-GAACCCGTAGGCAGAAGATTG
1 GAAGATTATTCGAGTTTTATACTCCCTGAAAGAATGAGGGAGCAG-ACACGT-TGTAGAAGATTG
* * *
788226 TTCGAGTTC-CTACTCCCTAAAGAAAGAGGGAGCGAACCTGTTGGCA
64 TTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCCG-TAGCA
* ** *
788272 GAAGATTGTTCGAGTTCCATACTCCCTGAAAGAAAGAGGGAGC
1 GAAGATTATTCGAGTTTTATACTCCCTGAAAGAATGAGGGAGC
788315 GAACCCGCTG
Statistics
Matches: 618, Mismatches: 68, Indels: 38
0.85 0.09 0.05
Matches are distributed among these distances:
108 1 0.00
109 99 0.16
110 310 0.50
111 74 0.12
112 132 0.21
113 2 0.00
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.26
Consensus pattern (109 bp):
GAAGATTATTCGAGTTTTATACTCCCTGAAAGAATGAGGGAGCAGACACGTTGTAGAAGATTGTT
CGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCCGTAGCA
Found at i:787981 original size:165 final size:164
Alignment explanation
Indices: 787446--788314 Score: 682
Period size: 165 Copynumber: 5.2 Consensus size: 164
787436 TTAAAGCATC
* ** * *
787446 AAGATTGTTCGAGTCTTATACTCTTTGAAGGAATAAGGAGCAGACACGATTGTTGAAGATTGTTC
1 AAGATTATTCGAGTCTTATACTCCCTGAAAGAATAGGGAGCAGACACGATTGTTGAAGATTGTTC
* * * *
787511 GAGTCTTATACTCTCTTAAGGAATAAGGACCAGACACGATTGTTAAAGATTGTTCGAG-TCTTAT
66 GAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTGAAGATTGTTCGAGTTC-TAT
* * * * * **
787575 ACACTCTAAA-AGAATAGGGAGCAGACACG-ATTGTTG
130 ACTCCCTAAAGA-AAGAGGGAGCA-ACCCGTA-GGAAG
* * *
787611 AAGATTATTCGAGTCTTATACTCTCTGAATGAATAGGGAGCAGACATGATTGTTGAAGATTGTTC
1 AAGATTATTCGAGTCTTATACTCCCTGAAAGAATAGGGAGCAGACACGATTGTTGAAGATTGTTC
* * *
787676 GAGTCTTATACTCTCTGAAGGAATAGGGAGCAAACACGATTGTTGAAGATTATTCGCG-TCTTAT
66 GAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTGAAGATTGTTCGAGTTC-TAT
* * * * * * **
787740 ACTCTCTGAAGGAATAGGGAGCAGACACG-ATTGTTG
130 ACTCCCTAAAGAAAGAGGGAGCA-ACCCGTA-GGAAG
* * *
787776 AAGATTGTTCGAGTCTTATACTCTCT-AAAGGAATAGGGAGCAGACACGATTTTTGAAGATTGTT
1 AAGATTATTCGAGTCTTATACTCCCTGAAA-GAATAGGGAGCAGACACGATTGTTGAAGATTGTT
* *
787840 CAAGTCTTATACTCTTTGAAGGAATAGGGAGCAGACACGATTGTTGAAGA-TGTTCGAGTTCTAT
65 CGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTGAAGATTGTTCGAGTTCTAT
*
787904 ACTCCCTAAAGAAAGAGGGGGCGAACCCGTAGGAAG
130 ACTCCCTAAAGAAAGAGGGAGC-AACCCGTAGGAAG
* * * ** *
787940 AAGATTATTCGAGTTTTGTACTCCCTGAAAGAATGAGGGAGC-GAACCCG-TTAGCAGAAGATTA
1 AAGATTATTCGAGTCTTATACTCCCTGAAAGAAT-AGGGAGCAG-ACACGATT-GTTGAAGATTG
* * * * ** *
788003 TTCGAGT-TCTATACTCCCTGAAAGAAAGAGGGAGC-GAACCCG-TTAGCAGAAGATTATTCGAG
63 TTCGAGTCT-TATACTCTCTG-AAGGAATAGGGAGCAG-ACACGATT-GTTGAAGATTGTTCGAG
*
788065 TTCTATACTCCCTGAGAGAAAGAGGGAGCAAACCCGTA-GAGAG
124 TTCTATACTCCCT-AAAGAAAGAGGGAGC-AACCCGTAGGA-AG
* * * * **
788108 AAGATTATTCGAGT-TCTATACTCCCAGAAAGAAAGAGGGATCA-AAACCG-TTAGCAGAAGATT
1 AAGATTATTCGAGTCT-TATACTCCCTGAAAG-AATAGGGAGCAGACA-CGATT-GTTGAAGATT
* * * * * * * **
788170 ATTC-AGTTTTATACTCCCTGAAAGAAAGAGGGAGC-GAACCCG-TAGGCAGAAGATTGTTCGAG
62 GTTCGAGTCTTATACTCTCTG-AAGGAATAGGGAGCAG-ACACGAT-TGTTGAAGATTGTTCGAG
* * * *
788232 TTC-CTACTCCCTAAAGAAAGAGGGAGCGAACCTGTTGGCAG
124 TTCTATACTCCCTAAAGAAAGAGGGAGC-AACCCGTAGGAAG
* * *
788273 AAGATTGTTCGAGT-TCCATACTCCCTGAAAGAAAGAGGGAGC
1 AAGATTATTCGAGTCT-TATACTCCCTGAAAG-AATAGGGAGC
788315 GAACCCGCTG
Statistics
Matches: 609, Mismatches: 72, Indels: 46
0.84 0.10 0.06
Matches are distributed among these distances:
164 64 0.11
165 356 0.58
166 31 0.05
167 80 0.13
168 76 0.12
169 2 0.00
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (164 bp):
AAGATTATTCGAGTCTTATACTCCCTGAAAGAATAGGGAGCAGACACGATTGTTGAAGATTGTTC
GAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTGAAGATTGTTCGAGTTCTATA
CTCCCTAAAGAAAGAGGGAGCAACCCGTAGGAAG
Found at i:787984 original size:56 final size:55
Alignment explanation
Indices: 787892--788321 Score: 598
Period size: 56 Copynumber: 7.8 Consensus size: 55
787882 GTTGAAGATG
* *
787892 TTCGAGTTCTATACTCCCT-AAAGAAAGAGGGGGCGAACCCGTAGGAAGAAGATTA
1 TTCGAGTTCTATACTCCCTGAAAGAAAGAGGGAGCGAACCCGTA-GCAGAAGATTA
* * *
787947 TTCGAGTTTTGTACTCCCTGAAAGAATGAGGGAGCGAACCCGTTAGCAGAAGATTA
1 TTCGAGTTCTATACTCCCTGAAAGAAAGAGGGAGCGAACCCG-TAGCAGAAGATTA
788003 TTCGAGTTCTATACTCCCTGAAAGAAAGAGGGAGCGAACCCGTTAGCAGAAGATTA
1 TTCGAGTTCTATACTCCCTGAAAGAAAGAGGGAGCGAACCCG-TAGCAGAAGATTA
* * *
788059 TTCGAGTTCTATACTCCCTGAGAGAAAGAGGGAGCAAACCCGTAGAGAGAAGATTA
1 TTCGAGTTCTATACTCCCTGAAAGAAAGAGGGAGCGAACCCGTAG-CAGAAGATTA
* * * *
788115 TTCGAGTTCTATACTCCCAGAAAGAAAGAGGGATCAAAACCGTTAGCAGAAGATTA
1 TTCGAGTTCTATACTCCCTGAAAGAAAGAGGGAGCGAACCCG-TAGCAGAAGATTA
* *
788171 TTC-AGTTTTATACTCCCTGAAAGAAAGAGGGAGCGAACCCGTAGGCAGAAGATTG
1 TTCGAGTTCTATACTCCCTGAAAGAAAGAGGGAGCGAACCCGTA-GCAGAAGATTA
* * * *
788226 TTCGAGTTC-CTACTCCCT-AAAGAAAGAGGGAGCGAACCTGTTGGCAGAAGATTG
1 TTCGAGTTCTATACTCCCTGAAAGAAAGAGGGAGCGAACCCG-TAGCAGAAGATTA
*
788280 TTCGAGTTCCATACTCCCTGAAAGAAAGAGGGAGCGAACCCG
1 TTCGAGTTCTATACTCCCTGAAAGAAAGAGGGAGCGAACCCG
788322 CTGATCGAAG
Statistics
Matches: 338, Mismatches: 28, Indels: 17
0.88 0.07 0.04
Matches are distributed among these distances:
54 43 0.13
55 83 0.25
56 207 0.61
57 5 0.01
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.21
Consensus pattern (55 bp):
TTCGAGTTCTATACTCCCTGAAAGAAAGAGGGAGCGAACCCGTAGCAGAAGATTA
Found at i:788511 original size:20 final size:20
Alignment explanation
Indices: 788486--788530 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
788476 TTTGTCCTGG
788486 TTATAAATATTATATTATAA
1 TTATAAATATTATATTATAA
* * *
788506 TTATAATTCTTATATTATTA
1 TTATAAATATTATATTATAA
788526 TTATA
1 TTATA
788531 TTATTGTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (20 bp):
TTATAAATATTATATTATAA
Found at i:788526 original size:3 final size:3
Alignment explanation
Indices: 788493--788580 Score: 58
Period size: 3 Copynumber: 30.7 Consensus size: 3
788483 TGGTTATAAA
* * * *
788493 TAT TA- TAT TAT AAT TAT AAT TCT TA- TAT TAT TAT TA- TAT TAT TGT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * *
788538 TAT TAT AAC AAT TA- TAT TAT AAT AAT TAT TAG TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
788581 ATATCATTTA
Statistics
Matches: 65, Mismatches: 16, Indels: 8
0.73 0.18 0.09
Matches are distributed among these distances:
2 8 0.12
3 57 0.88
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (3 bp):
TAT
Found at i:790789 original size:17 final size:18
Alignment explanation
Indices: 790762--790797 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
790752 ATACCACAAT
790762 TTATCGTTTTAATTAAAA
1 TTATCGTTTTAATTAAAA
*
790780 TTAT-GTTTTATTTAAAA
1 TTATCGTTTTAATTAAAA
790797 T
1 T
790798 GGCAAAACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.36, C:0.03, G:0.06, T:0.56
Consensus pattern (18 bp):
TTATCGTTTTAATTAAAA
Found at i:793958 original size:10 final size:10
Alignment explanation
Indices: 793912--793958 Score: 53
Period size: 10 Copynumber: 4.7 Consensus size: 10
793902 TGCAAAAGTA
793912 AAATAAAAAT
1 AAATAAAAAT
793922 AAA-ACAAAAT
1 AAATA-AAAAT
*
793932 GAAATTAAAAT
1 -AAATAAAAAT
793943 -AATAAAAAT
1 AAATAAAAAT
793952 AAATAAA
1 AAATAAA
793959 CGTTGAACAA
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
9 9 0.29
10 14 0.45
11 8 0.26
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (10 bp):
AAATAAAAAT
Found at i:794393 original size:15 final size:15
Alignment explanation
Indices: 794375--794413 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
794365 TTAAAGGACA
794375 GAAAAATAAAGTACT
1 GAAAAATAAAGTACT
* *
794390 G-AAATTAAAGTGCT
1 GAAAAATAAAGTACT
794404 GAAAAATAAA
1 GAAAAATAAA
794414 TAAATAAACA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.59, C:0.05, G:0.15, T:0.21
Consensus pattern (15 bp):
GAAAAATAAAGTACT
Found at i:795221 original size:19 final size:19
Alignment explanation
Indices: 795197--795246 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
795187 ACAACAAGGT
795197 AATGTGCTGGTGAGTGGAG
1 AATGTGCTGGTGAGTGGAG
795216 AATGTGCTGGTGAGTGGAG
1 AATGTGCTGGTGAGTGGAG
*
795235 AATGGGCTGGTG
1 AATGTGCTGGTG
795247 CTGATGAGTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.20, C:0.06, G:0.48, T:0.26
Consensus pattern (19 bp):
AATGTGCTGGTGAGTGGAG
Found at i:795254 original size:25 final size:25
Alignment explanation
Indices: 795219--795268 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
795209 AGTGGAGAAT
*
795219 GTGCTGGTGAGTGGAGAATGGGCTG
1 GTGCTGATGAGTGGAGAATGGGCTG
*
795244 GTGCTGATGAGTGGAGCATGGGCTG
1 GTGCTGATGAGTGGAGAATGGGCTG
795269 ATGACAGGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.16, C:0.10, G:0.50, T:0.24
Consensus pattern (25 bp):
GTGCTGATGAGTGGAGAATGGGCTG
Found at i:795350 original size:16 final size:16
Alignment explanation
Indices: 795329--795363 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
795319 TCGTTTACAG
*
795329 GTCAGGTTCATAACAT
1 GTCAGGTTCAAAACAT
*
795345 GTCAGGTTGAAAACAT
1 GTCAGGTTCAAAACAT
795361 GTC
1 GTC
795364 GGATAATACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (16 bp):
GTCAGGTTCAAAACAT
Found at i:795997 original size:5 final size:5
Alignment explanation
Indices: 795976--796022 Score: 53
Period size: 5 Copynumber: 9.4 Consensus size: 5
795966 AGAAGACTTC
*
795976 TTCTT TT-TT TCTTTT TTCTT TT-TT TTCTT TTCTTT TTCTT TTCTT TT
1 TTCTT TTCTT T-TCTT TTCTT TTCTT TTCTT TTC-TT TTCTT TTCTT TT
796023 TCGTGAGCGT
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
4 7 0.19
5 22 0.59
6 8 0.22
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (5 bp):
TTCTT
Found at i:796000 original size:16 final size:15
Alignment explanation
Indices: 795979--796023 Score: 63
Period size: 16 Copynumber: 2.9 Consensus size: 15
795969 AGACTTCTTC
795979 TTTTTTTCTTTTTTCT
1 TTTTTTTCTTTTTT-T
795995 TTTTTTTCTTTTCTTT
1 TTTTTTTCTTTT-TTT
*
796011 TTCTTTTCTTTTT
1 TTTTTTTCTTTTT
796024 CGTGAGCGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 1 0.04
16 24 0.89
17 2 0.07
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (15 bp):
TTTTTTTCTTTTTTT
Found at i:796001 original size:11 final size:11
Alignment explanation
Indices: 795973--796024 Score: 65
Period size: 11 Copynumber: 4.8 Consensus size: 11
795963 ATTAGAAGAC
795973 TTCTTCTTT-TT
1 TTCTT-TTTCTT
795984 TTCTTTTT-TCT
1 TTCTTTTTCT-T
795995 TT-TTTTTCTT
1 TTCTTTTTCTT
796005 TTCTTTTTCTT
1 TTCTTTTTCTT
796016 TTCTTTTTC
1 TTCTTTTTC
796025 GTGAGCGTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
10 12 0.32
11 26 0.68
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (11 bp):
TTCTTTTTCTT
Found at i:796806 original size:20 final size:20
Alignment explanation
Indices: 796767--796814 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
796757 TTGTTTTTAA
*
796767 TAAATTTTTATCTATGAAAT
1 TAAATTTTTATCTATAAAAT
* *
796787 TAAATTTTTATTTTTAAAAT
1 TAAATTTTTATCTATAAAAT
*
796807 AAAATTTT
1 TAAATTTT
796815 AAAAGAGTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (20 bp):
TAAATTTTTATCTATAAAAT
Found at i:796809 original size:19 final size:20
Alignment explanation
Indices: 796765--796815 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 20
796755 ATTTGTTTTT
796765 AATAAATTTTTATCTATGAA
1 AATAAATTTTTATCTATGAA
* * *
796785 ATTAAATTTTTAT-TTTTAA
1 AATAAATTTTTATCTATGAA
*
796804 AATAAAATTTTA
1 AATAAATTTTTA
796816 AAAGAGTATA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 14 0.54
20 12 0.46
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (20 bp):
AATAAATTTTTATCTATGAA
Found at i:797073 original size:24 final size:24
Alignment explanation
Indices: 797046--797097 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
797036 TTTTTATCGT
797046 TTTAGGTTCACATTTGGGCTAAAA
1 TTTAGGTTCACATTTGGGCTAAAA
*
797070 TTTAGGTTGACATTTGGGCTAAAA
1 TTTAGGTTCACATTTGGGCTAAAA
797094 TTTA
1 TTTA
797098 ATTTACTTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (24 bp):
TTTAGGTTCACATTTGGGCTAAAA
Found at i:798034 original size:16 final size:16
Alignment explanation
Indices: 798013--798053 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
798003 TCGTTTAATT
798013 TAATTTTTTCCTTGAA
1 TAATTTTTTCCTTGAA
798029 TAATTTTTTCCTTGAA
1 TAATTTTTTCCTTGAA
798045 -AATTATTTT
1 TAATT-TTTT
798054 AAGAAAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 4 0.17
16 20 0.83
ACGTcount: A:0.27, C:0.10, G:0.05, T:0.59
Consensus pattern (16 bp):
TAATTTTTTCCTTGAA
Found at i:799923 original size:13 final size:13
Alignment explanation
Indices: 799905--799929 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
799895 AAATTTTAAA
799905 ATTCGAGTAATCT
1 ATTCGAGTAATCT
799918 ATTCGAGTAATC
1 ATTCGAGTAATC
799930 AGACATTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
ATTCGAGTAATCT
Found at i:800116 original size:16 final size:15
Alignment explanation
Indices: 800087--800155 Score: 52
Period size: 16 Copynumber: 4.5 Consensus size: 15
800077 AAACTTAATT
*
800087 TAAAAAATACAACAA
1 TAAAAAATAAAACAA
800102 TAAATAAATAAAACAA
1 TAAA-AAATAAAACAA
*
800118 -ACAAACA-AAAACAA
1 TA-AAAAATAAAACAA
* *
800132 TCATAAAATAAAAAAAA
1 T-AAAAAAT-AAAACAA
800149 TAAAAAA
1 TAAAAAA
800156 ACCTAATATA
Statistics
Matches: 42, Mismatches: 6, Indels: 11
0.71 0.10 0.19
Matches are distributed among these distances:
14 7 0.17
15 10 0.24
16 18 0.43
17 7 0.17
ACGTcount: A:0.77, C:0.10, G:0.00, T:0.13
Consensus pattern (15 bp):
TAAAAAATAAAACAA
Found at i:801132 original size:2 final size:2
Alignment explanation
Indices: 801125--801154 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
801115 ATTCGATTAA
801125 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
801155 TGAGTTTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:801641 original size:50 final size:50
Alignment explanation
Indices: 801566--801688 Score: 151
Period size: 50 Copynumber: 2.5 Consensus size: 50
801556 GTAGCAGTAA
* * * *
801566 AGCGCGCGCCCTGAACCGCGCTATACGCTTATTTGGCGCCACGTGGGTAT
1 AGCGCGCCCCCTGAACCGCGATATACGCTGATCTGGCGCCACGTGGGTAT
** *
801616 AGCGCGCCCCCTGCCCCGCGATATACGGTGATCTGGCGCCACGTGGGTAT
1 AGCGCGCCCCCTGAACCGCGATATACGCTGATCTGGCGCCACGTGGGTAT
* *
801666 A--GCGCCCCCTGATCCGCGCTATA
1 AGCGCGCCCCCTGAACCGCGATATA
801689 ACTGGGTATA
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
48 19 0.30
50 44 0.70
ACGTcount: A:0.15, C:0.36, G:0.29, T:0.20
Consensus pattern (50 bp):
AGCGCGCCCCCTGAACCGCGATATACGCTGATCTGGCGCCACGTGGGTAT
Found at i:802161 original size:111 final size:111
Alignment explanation
Indices: 801967--802299 Score: 639
Period size: 111 Copynumber: 3.0 Consensus size: 111
801957 TGGAAATCAT
*
801967 ATATCTCTACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
*
802032 TATTTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
66 TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
802078 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
802143 TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
66 TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
802189 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
*
802254 TAATTAGTTGATTTATTTAATGCATGATTATTAGAGTAAGAATTAA
66 TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
802300 TTTTTGTAAT
Statistics
Matches: 219, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
111 219 1.00
ACGTcount: A:0.36, C:0.08, G:0.12, T:0.44
Consensus pattern (111 bp):
ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
Found at i:804205 original size:21 final size:21
Alignment explanation
Indices: 804172--804211 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
804162 ACCTGCTCAG
* *
804172 GACGACGACGACGACGATGGT
1 GACGACAAAGACGACGATGGT
*
804193 GACGACAAAGACGATGATG
1 GACGACAAAGACGACGATG
804212 ACAGCGAGGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.20, G:0.35, T:0.10
Consensus pattern (21 bp):
GACGACAAAGACGACGATGGT
Found at i:812342 original size:65 final size:65
Alignment explanation
Indices: 812205--812364 Score: 202
Period size: 65 Copynumber: 2.5 Consensus size: 65
812195 TGCACTAAAA
* *
812205 GTGCATCGATGCATGAAATGCATTCGAT-CTTTCAAAACAGCCAGAGTGCATCGATGCATGGCTG
1 GTGCATCGATGCATGAAATGCATTCGATGTTTTCAAAACAGCCAGAGTGCATCGATGCATAGCTG
* * *
812269 GTGTATCGATGCATCAAATGCATTCGATGTTTTCATAAA-A-CTCTGAGTGCATCGATGCATAG-
1 GTGCATCGATGCATGAAATGCATTCGATGTTTTCA-AAACAGC-CAGAGTGCATCGATGCATAGC
*
812331 TAT
64 T-G
*
812334 GTGCATCGATGCATGAAATGCATTCAATGTT
1 GTGCATCGATGCATGAAATGCATTCGATGTT
812365 CAATTTATTC
Statistics
Matches: 83, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
64 28 0.34
65 52 0.63
66 3 0.04
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.30
Consensus pattern (65 bp):
GTGCATCGATGCATGAAATGCATTCGATGTTTTCAAAACAGCCAGAGTGCATCGATGCATAGCTG
Found at i:812776 original size:21 final size:21
Alignment explanation
Indices: 812750--812811 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
812740 TTTGAAATTA
812750 CTCCCCCTTACTTTAACACTT
1 CTCCCCCTTACTTTAACACTT
*
812771 CT--CCC---CTTTAA-AATT
1 CTCCCCCTTACTTTAACACTT
812786 ACTCCCCCTTACTTTAACACTT
1 -CTCCCCCTTACTTTAACACTT
812808 CTCC
1 CTCC
812812 GCTTTAAAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 14
0.67 0.04 0.29
Matches are distributed among these distances:
15 3 0.09
16 8 0.25
18 3 0.09
19 3 0.09
21 12 0.38
22 3 0.09
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (21 bp):
CTCCCCCTTACTTTAACACTT
Found at i:812785 original size:37 final size:37
Alignment explanation
Indices: 812744--812820 Score: 145
Period size: 37 Copynumber: 2.1 Consensus size: 37
812734 ATTAAGTTTG
812744 AAATTACTCCCCCTTACTTTAACACTTCTCCCCTTTA
1 AAATTACTCCCCCTTACTTTAACACTTCTCCCCTTTA
*
812781 AAATTACTCCCCCTTACTTTAACACTTCTCCGCTTTA
1 AAATTACTCCCCCTTACTTTAACACTTCTCCCCTTTA
812818 AAA
1 AAA
812821 CATTTTAACA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.27, C:0.35, G:0.01, T:0.36
Consensus pattern (37 bp):
AAATTACTCCCCCTTACTTTAACACTTCTCCCCTTTA
Found at i:815122 original size:23 final size:22
Alignment explanation
Indices: 815092--815173 Score: 85
Period size: 23 Copynumber: 3.6 Consensus size: 22
815082 GCATGGCCTT
815092 GTGCATCGATGCACATTCAAGG
1 GTGCATCGATGCACATTCAAGG
* * *
815114 CGTGCATCGGTGCACCTTC-ATG
1 -GTGCATCGATGCACATTCAAGG
* *
815136 GTGTATAGATGCACATTCAAAGG
1 GTGCATCGATGCACATTC-AAGG
815159 GATGCATCGATGCAC
1 G-TGCATCGATGCAC
815174 TGTTAAACTG
Statistics
Matches: 46, Mismatches: 10, Indels: 5
0.75 0.16 0.08
Matches are distributed among these distances:
21 14 0.30
22 2 0.04
23 19 0.41
24 11 0.24
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (22 bp):
GTGCATCGATGCACATTCAAGG
Found at i:818822 original size:204 final size:204
Alignment explanation
Indices: 818463--818878 Score: 742
Period size: 204 Copynumber: 2.0 Consensus size: 204
818453 CAATTCACCC
*
818463 CCTCTTGGCTAATTCCGTCGATCGATTAACTCAACAATTGGCATCAGATCTGGACTCATTTGAAG
1 CCTCTTGGCCAATTCCGTCGATCGATTAACTCAACAATTGGCATCAGATCTGGACTCATTTGAAG
*
818528 GTTTAACCGCCTCTTGAGTAGATTCGGGAAGAGTTACATCGATAATCAAAGTCATCAATGGCCTC
66 GTTTAACCGCCTCTTGAGTAGATCCGGGAAGAGTTACATCGATAATCAAAGTCATCAATGGCCTC
*
818593 CACCTCAAACGTCGACTCCGGTCTCGATTCAATTCCCGTCAACAAGCCTCTTTTCTTCAATGGAG
131 CACCTCAAACGTCGACTCCGGTCTCGATTCAATTCCCGTCAACAAGCCTCCTTTCTTCAATGGAG
818658 CTAACTCTG
196 CTAACTCTG
* * *
818667 CCTCTTGGCCAATTCTGTCGATCGATTAACTTAACAATTGGCATCAGATCTTGACTCATTTGAAG
1 CCTCTTGGCCAATTCCGTCGATCGATTAACTCAACAATTGGCATCAGATCTGGACTCATTTGAAG
818732 GTTTAACCGCCTCTTGAGTAGATCCGGGAAGAGTTACATCGATAATCAAAGTCATCAATGGCCTC
66 GTTTAACCGCCTCTTGAGTAGATCCGGGAAGAGTTACATCGATAATCAAAGTCATCAATGGCCTC
* * *
818797 CACCTCAAACGTCTACTCTGGTCTCGATTCGATTCCCGTCAACAAGCCTCCTTTCTTCAATGGAG
131 CACCTCAAACGTCGACTCCGGTCTCGATTCAATTCCCGTCAACAAGCCTCCTTTCTTCAATGGAG
818862 CTAACTCTG
196 CTAACTCTG
*
818871 CCTATTGG
1 CCTCTTGG
818879 AAGAATAGGA
Statistics
Matches: 202, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
204 202 1.00
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (204 bp):
CCTCTTGGCCAATTCCGTCGATCGATTAACTCAACAATTGGCATCAGATCTGGACTCATTTGAAG
GTTTAACCGCCTCTTGAGTAGATCCGGGAAGAGTTACATCGATAATCAAAGTCATCAATGGCCTC
CACCTCAAACGTCGACTCCGGTCTCGATTCAATTCCCGTCAACAAGCCTCCTTTCTTCAATGGAG
CTAACTCTG
Found at i:823791 original size:22 final size:22
Alignment explanation
Indices: 823765--823850 Score: 109
Period size: 22 Copynumber: 3.9 Consensus size: 22
823755 TTAGTGCAGA
823765 GGGAATCGATACCCCCTTGAAG
1 GGGAATCGATACCCCCTTGAAG
* * *
823787 GGGAACCGATTCCCCTTTTGAAG
1 GGGAATCGATACCCC-CTTGAAG
* * *
823810 GGGAATCGATTCCCCCCTGTAG
1 GGGAATCGATACCCCCTTGAAG
823832 GGGAATCGATACCCCCTTG
1 GGGAATCGATACCCCCTTG
823851 GGGTTCTGTT
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
22 34 0.63
23 20 0.37
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (22 bp):
GGGAATCGATACCCCCTTGAAG
Done.