genome.fa.s4800.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004800.1 Hibiscus syriacus cultivar Beakdansim tig00010815_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110959

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3116--3175	29	2.0	31	93	6	106	43	16	6	33	1.74
10867--10896	15	2.0	15	93	0	51	30	16	6	46	1.73
18291--18374	29	2.9	28	75	13	80	33	0	4	61	1.17
18849--18906	29	2.0	30	86	3	82	18	15	15	50	1.79
21863--21912	20	2.5	20	96	0	91	24	30	8	38	1.84
21930--22010	20	4.1	20	85	3	110	40	24	13	20	1.89
21930--22010	40	2.0	40	92	0	135	40	24	13	20	1.89
22716--22748	13	2.5	13	100	0	66	21	9	18	51	1.73
22811--22849	14	2.9	14	82	17	55	41	30	20	7	1.80
22961--23136	66	2.6	66	85	10	225	52	15	2	29	1.57
24126--24158	11	3.0	11	95	0	57	63	6	12	18	1.48
26832--26881	14	3.6	14	86	0	64	12	14	24	50	1.76
27405--27520	20	5.8	20	89	0	169	18	17	25	38	1.92
27524--27572	20	2.5	20	93	0	80	20	16	26	36	1.93
27426--27573	60	2.5	60	82	10	162	18	16	26	38	1.92
27406--27539	40	3.4	40	86	4	157	18	16	25	39	1.91
27538--27613	20	3.8	21	75	6	68	26	13	28	31	1.93
27586--27628	19	2.2	20	83	4	52	23	13	30	32	1.93
28309--28353	23	2.0	23	90	0	72	35	17	22	24	1.95
28426--28466	16	2.6	16	88	3	57	31	19	9	39	1.84
30188--30229	21	2.0	21	100	0	84	28	14	14	42	1.84
32079--32134	18	3.2	18	82	2	69	58	1	0	39	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34982--35049	10	6.8	10	75	9	59	23	1	4	70	1.13
34982--35049	31	2.3	29	76	5	73	23	1	4	70	1.13
37830--37880	24	2.2	24	85	3	68	35	1	0	62	1.06
45555--45580	2	13.0	2	100	0	52	50	0	0	50	1.00
55244--55302	28	2.1	29	81	15	70	30	15	37	16	1.90
56177--56209	2	16.5	2	100	0	66	48	51	0	0	1.00
56577--56649	18	3.9	18	78	7	83	28	30	19	21	1.98
56588--56669	38	2.2	38	88	0	119	30	30	17	21	1.96
56640--56678	20	2.0	20	89	0	60	33	30	15	20	1.94
58791--58862	24	3.0	24	80	17	94	69	1	0	29	0.97
58896--58932	10	3.7	10	85	0	56	35	0	37	27	1.57
58893--58938	20	2.3	20	96	0	83	32	0	34	32	1.58
61961--62023	32	2.0	32	100	0	126	36	19	12	31	1.89
64107--64154	18	2.7	18	90	3	71	29	31	6	33	1.82
64737--64767	16	1.9	16	93	0	53	19	54	6	19	1.65
65243--65354	35	3.2	35	88	0	161	41	23	0	33	1.60
66415--66526	35	3.2	34	87	6	154	34	0	21	42	1.59
72472--72561	23	3.8	24	77	4	103	25	15	21	37	1.92
78046--78135	23	3.8	24	77	4	103	25	15	21	37	1.92
84213--84242	10	2.9	10	95	5	51	70	0	3	26	1.03
89722--89755	17	1.9	18	88	5	52	64	0	0	35	0.94
93115--93157	18	2.4	18	88	3	61	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95236--95268	2	16.5	2	100	0	66	51	0	0	48	1.00
99948--100058	10	11.6	9	67	25	50	29	2	4	63	1.28
102066--102099	16	2.1	16	94	0	59	38	0	0	61	0.96
103156--103205	27	1.9	26	88	12	68	56	16	2	26	1.51
104208--104353	59	2.4	59	78	9	154	31	15	17	34	1.92
104541--104632	19	4.8	20	71	19	70	38	0	6	55	1.26
109583--109641	28	2.1	29	96	3	111	47	27	0	25	1.52
110475--110722	124	2.0	124	95	0	442	28	13	31	26	1.94

Tables:   1

The End!