Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004801.1 Hibiscus syriacus cultivar Beakdansim tig00010816_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36191

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
725--754
15
2.0
15
93
0
51
40
16
6
36
1.75
723--810
36
2.4
35
87
9
122
40
11
4
43
1.61
748--823
36
2.1
36
87
4
109
47
9
2
40
1.49
1390--2095
192
3.6
198
80
7
795
27
21
18
32
1.97
1370--2098
197
3.7
195
79
7
775
27
21
18
32
1.97
8383--8422
15
2.6
16
88
4
64
62
0
7
30
1.23
9871--10117
127
1.9
127
99
0
485
36
13
12
37
1.82
12228--12354
23
5.4
23
80
3
101
22
14
7
55
1.64
14244--14431
37
5.0
36
76
18
179
44
4
7
43
1.53
14245--14425
36
4.8
36
78
13
172
43
4
7
43
1.54
14244--14459
38
5.7
35
77
11
164
45
4
6
43
1.50
14463--14542
33
2.5
32
87
6
108
42
1
7
48
1.39
14620--14644
13
1.9
13
100
0
50
24
0
4
72
1.02
14617--14664
17
2.8
17
84
12
55
22
4
4
68
1.24
14840--14869
16
1.9
15
93
6
51
20
40
26
13
1.89
16476--17254
164
4.7
164
83
2
859
30
24
20
24
1.99
16476--17257
329
2.4
326
81
5
935
30
24
20
24
1.99
17798--17864
2
34.0
2
96
3
127
49
0
0
50
1.00
17890--18122
39
6.1
37
74
16
158
42
5
7
44
1.55
17871--18093
36
5.8
38
77
12
208
43
5
8
43
1.57
17871--18122
36
6.6
38
75
16
177
42
5
7
43
1.58
18237--18279
19
2.3
19
83
0
50
46
0
0
53
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18270--18294
13
1.9
13
100
0
50
24
0
4
72
1.02
18267--18314
17
2.8
17
84
12
55
22
4
4
68
1.24
19452--19501
18
2.7
19
84
9
68
16
8
6
70
1.32
19623--19673
21
2.5
20
78
15
59
15
5
1
76
1.07
19681--19721
17
2.4
16
84
11
55
19
2
2
75
1.03
19625--19721
13
7.5
12
71
21
54
17
5
3
74
1.14
23835--23880
21
2.2
21
96
0
83
32
13
28
26
1.93
25808--25886
19
4.3
17
78
13
68
78
3
6
11
1.06
25836--25898
8
8.1
8
76
13
51
80
3
3
12
0.94
25767--25896
37
3.5
37
73
19
117
76
4
5
13
1.13
25808--25898
47
2.0
46
84
6
121
78
4
5
12
1.08
25837--25896
29
2.1
29
84
12
79
81
3
3
11
0.93
25808--25896
14
5.9
14
69
21
56
78
4
5
11
1.06
25934--25989
13
4.5
13
74
14
55
71
3
3
21
1.17
26117--26175
2
30.5
2
93
6
104
52
0
0
47
1.00
26117--26188
22
3.2
24
86
7
80
54
2
0
43
1.15
26227--26288
10
5.9
11
69
17
51
62
0
3
33
1.11
26484--26511
2
14.0
2
100
0
56
50
0
0
50
1.00
26450--26492
21
2.0
21
86
8
61
72
0
2
25
0.97
28238--29020
80
9.7
80
83
2
890
24
18
23
33
1.97
28238--29020
160
4.8
160
86
3
984
24
18
23
33
1.97
28984--29047
26
2.4
26
84
7
76
23
17
23
35
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28901--29132
110
2.1
110
84
0
293
22
17
25
34
1.96
28820--29215
194
2.1
190
85
3
533
23
17
24
34
1.96
29011--29444
84
5.2
84
85
1
555
21
18
25
34
1.96
30582--30837
95
2.7
95
84
4
275
32
17
16
33
1.93
33598--33641
23
1.9
23
95
0
79
79
2
2
15
0.93
33583--33656
28
2.7
28
83
10
82
78
2
2
16
0.98
33599--33658
10
5.8
11
83
14
67
78
1
1
18
0.92
33598--33658
23
2.7
22
85
9
72
78
1
1
18
0.91
33584--33658
18
4.2
18
79
14
68
77
2
2
17
1.00
33874--33936
2
32.5
2
87
12
96
52
0
1
46
1.10
33894--33965
28
2.5
29
84
8
85
58
2
1
37
1.21
33943--34021
22
3.6
22
71
21
67
62
1
3
32
1.21
34088--34151
28
2.2
28
86
2
83
59
12
1
26
1.42
34147--34191
21
2.1
21
84
8
56
64
2
4
28
1.25
34220--34288
33
2.0
34
84
15
90
66
0
2
30
1.06
34219--34303
43
2.1
41
80
10
95
67
0
2
30
1.04
34248--34307
21
2.8
22
82
14
81
65
0
1
33
1.03
35100--35203
37
2.8
37
91
0
163
40
12
15
31
1.84
35100--35216
37
3.2
37
82
4
103
41
13
14
30
1.85

Tables:   1

The End!