genome.fa.s4803.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004803.1 Hibiscus syriacus cultivar Beakdansim tig00010821_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83633

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1270--1310	20	2.2	19	91	8	66	31	14	17	36	1.90
4368--4431	13	4.9	13	96	0	119	29	23	17	29	1.97
5208--5275	28	2.4	28	97	0	127	39	2	19	38	1.67
7141--7201	20	3.3	20	69	21	69	40	3	29	26	1.72
7115--7270	35	4.5	35	89	8	237	37	5	28	28	1.79
7211--7281	18	3.9	18	75	14	74	35	5	30	28	1.80
8436--8471	18	2.0	18	100	0	72	22	16	5	55	1.62
11427--11483	28	2.0	28	86	6	80	35	24	14	26	1.93
12301--12360	31	1.9	31	82	0	75	30	11	15	43	1.82
20521--20560	19	2.0	20	85	4	55	55	7	2	35	1.42
22200--22240	21	2.0	21	90	0	64	43	0	14	41	1.45
22441--22481	20	2.1	20	86	4	57	46	4	9	39	1.58
30458--30537	29	2.8	29	92	3	126	15	31	32	21	1.94
30724--30775	25	2.1	25	96	0	95	28	9	34	26	1.88
30788--30833	23	2.0	23	100	0	92	47	4	39	8	1.54
30788--30848	23	2.6	23	86	5	59	50	6	36	6	1.54
30838--30890	21	2.5	21	96	0	97	62	0	35	1	1.06
30836--30867	17	1.9	16	93	6	55	62	0	37	0	0.95
31053--31184	45	3.0	45	80	14	134	40	0	12	47	1.41
32600--32649	15	3.6	15	71	20	54	38	2	10	50	1.48
32597--32655	26	2.3	24	81	16	73	42	1	8	47	1.44
33386--33485	40	2.3	46	81	13	115	49	9	1	41	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33393--33485	47	2.1	43	84	11	116	48	7	1	43	1.38
33462--33514	27	1.9	28	92	3	90	56	13	0	30	1.37
33491--33539	21	2.3	21	85	3	71	53	16	0	30	1.43
34007--34070	15	4.1	15	76	11	74	17	53	7	21	1.69
33994--34078	16	5.2	16	78	7	82	16	51	9	22	1.72
34008--34078	33	2.2	32	89	2	106	16	50	9	22	1.74
34118--34207	29	3.1	29	98	0	171	17	35	32	14	1.90
34850--34995	32	4.6	32	75	0	132	15	32	15	36	1.89
34926--34995	31	2.2	32	87	2	97	14	35	12	37	1.84
37833--37907	38	2.0	37	82	10	91	49	1	0	49	1.09
39044--39157	3	38.0	3	100	0	228	33	0	0	66	0.92
45291--45327	15	2.5	15	95	0	65	8	70	16	5	1.30
49194--49275	29	2.8	29	92	1	128	32	15	9	41	1.80
53963--54044	29	2.8	29	92	1	128	32	15	9	41	1.80
57033--57130	22	4.3	22	67	12	72	37	0	10	52	1.36
56971--57088	15	7.5	15	79	13	130	44	0	2	51	1.20
57138--57637	32	16.7	32	71	22	365	34	0	11	53	1.42
57171--57213	22	2.0	22	95	0	77	34	2	13	48	1.56
57139--57654	54	9.3	54	76	14	516	34	0	11	53	1.42
57193--57734	86	6.5	84	85	7	504	34	0	11	53	1.41
57068--57654	220	2.6	220	93	2	996	34	0	12	53	1.42
57391--57433	22	2.0	22	95	0	77	37	0	11	51	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57445--57487	22	2.0	22	95	0	77	34	2	11	51	1.51
57476--57529	14	3.6	14	72	18	54	37	0	5	57	1.22
57531--57573	22	2.0	22	95	0	77	34	2	13	48	1.56
57562--57615	14	3.6	14	72	18	54	37	0	5	57	1.22
57068--57749	306	2.2	306	90	3	1051	34	0	12	53	1.42
57068--57748	220	3.1	214	81	12	767	34	0	12	53	1.42
57503--57749	54	4.5	54	73	13	243	34	0	12	52	1.42
59490--59525	18	2.0	18	94	0	63	47	13	5	33	1.67
68491--68538	15	2.9	17	75	12	55	50	0	0	50	1.00
68454--68538	38	2.2	37	84	12	102	52	0	0	47	1.00
74932--74999	35	2.0	34	83	11	86	39	8	14	36	1.78
78683--78727	23	2.0	22	83	12	56	51	11	0	37	1.38
79024--79076	17	3.1	17	84	7	63	56	1	0	41	1.10

Tables:   1

The End!