genome.fa.s4804.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004804.1 Hibiscus syriacus cultivar Beakdansim tig00010822_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107396

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1469--1499	2	15.5	2	100	0	62	48	0	0	51	1.00
8494--9199	272	2.6	266	87	4	956	37	22	7	33	1.82
10081--10230	59	2.6	58	92	3	239	48	12	6	34	1.65
19769--19833	31	2.2	31	81	10	82	32	18	4	44	1.70
31499--31538	2	19.5	2	94	5	71	47	0	2	50	1.14
31669--31705	18	2.1	18	90	5	58	62	2	0	35	1.10
32863--32906	21	2.1	21	91	0	70	38	2	0	59	1.10
39876--39954	32	2.5	32	97	2	151	10	10	40	39	1.73
44615--44640	7	3.7	7	100	0	52	26	15	15	42	1.87
46285--46362	23	3.3	23	67	21	63	33	5	15	46	1.68
46276--46367	47	2.0	45	93	4	157	33	4	16	45	1.67
46290--46382	47	2.0	45	83	8	116	35	4	18	41	1.70
46782--46823	20	2.1	20	100	0	84	26	9	14	50	1.73
57876--57922	24	2.0	24	91	0	76	25	0	0	74	0.82
57876--57925	15	3.2	16	78	18	61	26	0	0	74	0.83
59378--59440	21	3.0	21	97	0	117	28	14	11	46	1.78
59429--59501	33	2.2	33	87	2	112	31	9	15	43	1.78
59841--59908	35	1.9	35	93	0	118	16	35	13	35	1.87
60223--60261	19	2.1	19	100	0	78	20	5	33	41	1.74
61814--61891	29	2.6	30	80	10	88	24	41	17	16	1.90
61841--61956	29	4.0	29	89	0	133	24	37	23	15	1.93
61845--61956	58	1.9	58	85	0	152	23	37	24	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61995--62059	32	2.0	32	100	0	130	12	30	29	27	1.93
62045--62088	23	1.9	23	100	0	88	22	22	27	27	1.99
62497--62572	28	2.7	29	82	12	86	32	0	11	55	1.36
62859--62899	21	1.9	22	95	5	75	31	0	14	53	1.41
62866--62910	21	2.2	21	84	4	56	35	0	8	55	1.31
65991--66677	60	12.2	60	78	14	740	41	0	12	46	1.43
66106--66673	49	10.6	49	81	16	507	41	0	12	46	1.43
66153--66233	24	3.3	24	65	3	72	39	0	14	45	1.45
66254--66398	21	7.2	19	67	14	69	40	0	14	44	1.50
65994--66677	228	3.1	227	90	5	1122	41	0	12	46	1.43
66118--66624	277	1.8	275	96	0	942	40	0	12	46	1.44
66441--66624	59	3.1	59	92	2	325	40	0	12	46	1.42
65994--66624	109	5.6	114	81	13	627	41	0	12	46	1.43
66560--66673	48	2.4	48	91	4	176	41	0	10	48	1.38
66624--66673	21	2.3	22	82	3	66	42	0	6	52	1.26
66530--66693	14	11.2	14	67	22	61	39	0	11	48	1.39
66441--66678	118	2.0	118	86	7	331	40	0	11	47	1.39
67685--67729	23	2.0	23	86	0	63	55	2	2	40	1.24
69383--69429	14	3.5	13	77	11	51	2	40	0	57	1.11
69436--69485	26	1.9	26	91	0	82	10	34	8	48	1.66
69538--69581	23	1.9	23	100	0	88	20	34	13	31	1.92
69747--69828	29	2.8	29	88	0	119	14	21	40	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71390--71424	17	1.9	17	88	11	52	48	0	0	51	1.00
78751--79436	341	2.0	342	98	1	1324	36	18	16	27	1.93
81194--81226	13	2.7	12	90	9	57	27	6	12	54	1.60
82103--82154	20	2.7	19	79	5	59	26	26	15	30	1.96
83129--83203	3	25.0	3	78	10	73	69	1	28	1	1.05
83595--83658	31	2.1	31	84	0	83	42	10	25	21	1.85
83968--84005	20	1.9	19	94	5	67	31	0	0	68	0.90
84399--84495	20	4.8	20	70	7	79	16	20	21	41	1.90
84432--84520	41	2.1	42	83	6	110	17	19	23	39	1.92
84487--84550	22	3.0	22	68	13	71	18	18	23	39	1.93
84633--84671	6	6.5	6	100	0	78	33	51	15	0	1.44
85299--85351	22	2.4	22	90	0	88	37	26	16	18	1.93
85343--85413	20	3.6	20	75	3	81	40	23	21	14	1.89
85340--85438	39	2.5	40	90	3	155	37	24	20	18	1.94
93285--93334	19	2.6	19	81	12	66	54	2	0	44	1.11
93348--93392	23	1.9	24	86	4	65	48	0	0	51	1.00
106278--106324	24	2.0	24	86	0	67	40	12	17	29	1.86

Tables:   1

The End!