Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004807.1 Hibiscus syriacus cultivar Beakdansim tig00010827_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60424

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16563--16674
40
2.8
39
81
11
131
51
6
4
37
1.47
16646--16701
27
2.1
27
93
0
94
48
5
1
44
1.36
17449--17476
2
14.0
2
100
0
56
50
0
0
50
1.00
19189--19221
2
16.5
2
100
0
66
48
0
0
51
1.00
29262--29314
20
2.7
20
74
11
63
28
33
15
22
1.94
29306--29409
40
2.6
41
80
11
121
40
25
14
20
1.90
29323--29429
19
5.4
19
76
7
79
40
25
13
21
1.89
29376--29428
19
2.7
20
88
8
81
35
24
13
26
1.92
29585--29622
16
2.5
15
84
12
51
28
5
0
65
1.14
32612--32647
18
2.0
18
94
0
63
55
25
2
16
1.55
32937--32975
20
2.0
20
100
0
78
41
20
20
17
1.91
33227--33284
30
2.0
29
93
3
98
43
5
24
27
1.75
33472--33526
24
2.3
25
81
9
69
32
5
14
47
1.67
33491--33527
18
2.1
18
89
0
56
32
5
10
51
1.60
33483--33535
24
2.2
24
86
0
70
35
3
13
47
1.61
33837--33923
39
2.2
39
95
0
156
48
20
13
17
1.81
34293--34432
66
2.2
60
87
7
190
50
17
0
30
1.51
36414--36471
21
2.7
22
78
10
66
25
24
31
18
1.98
38556--38606
20
2.5
20
80
0
66
52
19
11
15
1.73
39108--39227
20
6.1
20
79
10
131
21
17
21
39
1.93
39121--39227
39
2.7
39
90
7
155
20
16
23
39
1.92
39214--39267
20
2.7
19
75
8
63
24
14
33
27
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41178--41638
195
2.4
193
81
6
527
38
11
11
38
1.78
42636--42685
18
2.6
18
81
9
55
66
4
2
28
1.21
45286--45403
54
2.2
54
81
0
128
29
17
24
27
1.97
45631--45661
16
1.9
16
100
0
62
38
0
9
51
1.35
47371--47404
17
2.0
17
88
0
50
44
14
5
35
1.70
52116--52358
32
7.6
32
75
13
169
34
18
13
32
1.90
52116--52358
64
3.8
64
78
8
210
34
18
13
32
1.90
54043--54071
14
2.1
14
100
0
58
48
6
20
24
1.74
54183--57943
947
4.0
946
89
3
5598
38
14
17
29
1.90
58790--58900
36
3.2
33
76
17
120
29
18
9
41
1.83
59220--59314
38
2.5
37
75
9
95
33
14
10
41
1.81
59203--59298
36
2.6
35
74
11
86
35
14
9
40
1.78
59641--59721
34
2.3
35
87
2
110
34
24
13
27
1.93

Tables:   1

The End!