genome.fa.s481.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000481.1 Hibiscus syriacus cultivar Beakdansim tig00000913_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  369907

Tables:   1   2   

This is table  1  of  2  ( 132 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17196--17304	48	2.3	48	78	10	118	42	1	3	52	1.30
17372--17412	8	5.2	8	88	5	66	39	0	0	60	0.96
17372--17412	15	2.6	16	84	7	66	39	0	0	60	0.96
17373--17455	23	3.6	22	77	11	87	44	0	0	55	0.99
17380--17486	37	2.8	36	74	16	99	42	0	1	55	1.17
17400--17549	14	11.0	14	65	19	59	46	0	3	49	1.23
17506--17551	15	3.1	15	81	3	58	54	0	2	43	1.12
26614--26643	2	14.5	2	93	6	51	50	3	0	46	1.18
28759--28841	19	4.6	19	82	14	113	18	28	34	18	1.94
28751--28835	33	2.6	33	92	0	143	16	28	35	20	1.94
28751--28817	14	4.4	14	77	17	71	16	28	35	19	1.93
30173--30207	18	1.9	18	88	0	52	54	0	17	28	1.43
33960--34042	19	4.6	19	82	14	113	18	28	34	18	1.94
33952--34036	33	2.6	33	92	0	143	16	28	35	20	1.94
33952--34018	14	4.4	14	77	17	71	16	28	35	19	1.93
35373--35407	18	1.9	18	88	0	52	54	0	17	28	1.43
38039--38074	2	18.0	2	100	0	72	50	0	0	50	1.00
50318--50349	2	16.0	2	100	0	64	50	0	0	50	1.00
52001--52072	23	3.1	22	78	9	72	22	16	12	48	1.79
54357--54390	17	1.9	18	88	5	52	23	26	41	8	1.83
55148--55181	2	17.0	2	100	0	68	50	0	0	50	1.00
55381--55406	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55745--55774	2	15.0	2	100	0	60	50	0	0	50	1.00
57135--57235	31	3.3	30	82	13	125	59	2	10	26	1.45
57138--57229	29	3.1	29	83	13	123	59	2	10	27	1.42
59021--59085	31	2.1	31	94	0	112	46	16	16	20	1.85
64808--65438	304	2.0	311	80	7	716	38	18	12	31	1.87
65120--66051	331	2.8	329	78	8	815	37	18	13	29	1.89
65832--66649	271	3.0	271	90	1	1260	37	21	11	28	1.89
67154--67216	24	2.5	25	79	7	74	38	1	7	52	1.40
67566--67633	29	2.3	29	94	0	118	30	11	17	39	1.86
71304--71377	39	2.0	39	84	10	93	45	10	14	28	1.79
72176--72218	4	10.8	4	84	0	59	30	0	18	51	1.47
72177--72218	16	2.6	16	88	0	66	30	0	16	52	1.44
78794--78853	31	1.9	31	83	6	77	33	16	6	43	1.74
82991--83070	24	3.3	24	82	3	81	16	16	16	51	1.77
85921--85961	21	2.0	21	85	4	57	34	2	4	58	1.32
94552--94599	22	2.2	22	92	0	78	29	25	8	37	1.85
96055--96136	37	2.2	37	82	4	94	48	15	2	32	1.58
96080--96236	49	3.2	49	87	4	219	45	16	3	34	1.63
96129--96207	24	3.2	24	67	10	61	44	17	2	35	1.63
96047--96246	25	8.1	25	67	6	95	46	18	3	33	1.64
97160--97224	31	2.1	32	85	2	87	24	9	27	38	1.86
97683--97738	18	3.1	19	77	15	64	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99050--99075	12	2.2	12	100	0	52	7	26	30	34	1.85
105870--105910	21	2.0	21	85	9	57	26	24	26	21	2.00
107155--107211	6	9.5	6	81	14	55	26	7	17	49	1.72
107155--107223	18	3.8	17	75	17	59	26	8	17	47	1.76
110342--110383	16	2.6	16	96	0	75	23	42	19	14	1.87
112761--112806	19	2.4	18	86	13	58	39	0	0	60	0.97
113034--113063	12	2.6	12	94	5	53	53	0	6	40	1.27
112966--113105	38	3.8	37	78	10	137	46	4	1	47	1.31
113994--114057	31	2.0	33	84	6	87	31	7	6	54	1.54
117589--117626	2	19.0	2	100	0	76	50	0	0	50	1.00
129184--129220	4	9.2	4	100	0	74	27	0	24	48	1.51
135790--135814	2	12.5	2	100	0	50	48	0	0	52	1.00
135826--135860	17	2.1	17	94	0	61	40	8	22	28	1.84
136899--137022	60	2.1	60	81	6	144	36	15	12	35	1.86
138052--138128	30	2.6	30	97	0	145	25	20	14	38	1.91
165062--165136	39	1.9	39	89	5	116	41	21	14	22	1.89
165424--165453	2	15.0	2	100	0	60	50	0	0	50	1.00
170005--170064	2	30.0	2	100	0	120	50	0	0	50	1.00
173139--173180	19	2.2	19	95	0	75	16	0	9	73	1.08
177108--177140	15	2.1	16	94	5	59	51	18	24	6	1.68
187703--187729	2	13.5	2	100	0	54	48	0	0	51	1.00
192368--192392	4	6.2	4	100	0	50	0	76	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
193121--193614	8	61.8	8	100	0	988	25	12	24	37	1.90
196388--196416	5	5.8	5	100	0	58	0	17	0	82	0.66
201420--201455	18	2.0	18	100	0	72	22	11	22	44	1.84
201793--201830	18	2.1	18	95	0	67	47	21	7	23	1.77
206556--206654	45	2.1	49	87	7	143	28	10	20	41	1.84
216298--216344	19	2.5	18	86	13	60	74	2	17	6	1.12
216313--216404	8	12.0	7	72	18	51	77	1	16	5	1.01
216298--216396	18	5.6	17	71	20	62	76	1	16	6	1.03
216288--216404	31	3.7	32	75	17	93	76	0	17	5	1.04
216333--216382	15	3.3	15	80	5	55	82	2	14	2	0.86
216315--216405	39	2.3	38	80	14	105	76	1	15	6	1.04
216364--216412	15	3.3	15	83	10	57	75	0	14	10	1.04
216349--216411	22	2.9	21	83	4	72	77	0	14	7	0.97
217727--218090	51	6.9	53	87	6	394	29	14	27	28	1.95
217738--218196	55	8.6	55	89	4	545	28	16	26	28	1.97
219529--219887	51	6.8	51	92	2	459	30	15	27	27	1.96
219535--219993	55	8.6	55	90	3	543	29	16	26	27	1.97
243227--243252	5	5.2	5	100	0	52	80	0	0	19	0.71
243430--243492	31	2.1	30	85	8	83	76	3	1	19	1.01
245013--245135	41	3.0	41	97	0	228	44	4	16	34	1.66
255966--255996	10	3.2	10	95	4	55	83	0	16	0	0.64
256050--256105	24	2.3	23	82	8	67	82	1	12	3	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
259423--259475	24	2.2	25	83	10	65	22	3	1	71	1.12
260621--260653	2	16.5	2	100	0	66	51	0	0	48	1.00
270864--271004	64	2.2	63	83	7	178	31	17	24	26	1.97
270992--271049	20	2.6	22	89	10	84	31	20	22	25	1.98
273037--273188	47	3.3	47	92	0	252	35	3	23	38	1.71
274847--274883	2	19.0	2	94	5	67	48	0	0	51	1.00
275236--275349	60	1.9	60	87	0	165	37	20	9	32	1.85
289981--290037	24	2.4	24	82	8	71	45	12	17	24	1.83
290016--290107	42	2.2	43	82	5	116	42	14	23	19	1.88
304953--305046	30	3.1	30	95	0	170	38	15	27	18	1.91
309107--309151	23	1.9	23	82	13	56	15	26	6	51	1.68
309215--309311	39	2.5	39	100	0	194	22	23	8	45	1.79
309238--309301	19	3.3	19	65	26	53	18	26	7	46	1.76
309235--309302	22	3.3	22	66	26	67	17	26	7	48	1.73
309106--309425	151	2.1	152	91	1	518	27	20	11	40	1.87
309254--309798	112	4.9	113	86	1	679	28	18	14	37	1.91
310202--310254	22	2.4	22	87	0	79	37	13	15	33	1.86
310626--310755	50	2.6	50	88	2	199	28	19	15	36	1.92
312792--313132	114	3.0	114	94	0	565	31	20	15	32	1.94
319388--319433	17	2.7	18	80	16	53	71	0	2	26	0.97
324015--324055	21	2.0	21	85	0	55	75	2	9	12	1.13
324036--324084	24	2.0	25	88	4	73	67	0	10	22	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324044--324084	12	3.3	13	90	10	68	65	0	7	26	1.18
324036--324084	12	4.1	12	84	10	64	67	0	10	22	1.20
324516--324610	45	2.1	45	78	1	102	21	23	31	24	1.98
325541--325701	64	2.5	64	84	4	200	32	23	14	29	1.95
326565--326772	65	3.2	63	78	14	217	30	23	18	26	1.98
328498--328597	49	2.0	49	98	0	191	36	22	26	16	1.94
333962--334115	64	2.4	64	81	4	177	30	22	14	31	1.94
336492--336553	31	2.0	32	83	3	81	24	9	12	53	1.69
336768--336928	60	2.7	58	76	7	151	32	17	8	42	1.78
339636--339675	10	4.0	10	83	0	53	15	12	17	55	1.70

Tables:   1   2