Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004810.1 Hibiscus syriacus cultivar Beakdansim tig00010832_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90171

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1338--1523
93
2.0
91
93
2
318
29
14
4
52
1.61
5645--5717
18
3.9
18
80
7
92
28
31
19
20
1.97
5649--5723
38
2.0
38
94
0
132
30
29
18
21
1.97
5963--6000
2
19.0
2
100
0
76
50
0
0
50
1.00
6380--6431
19
2.7
19
90
0
86
23
30
17
28
1.97
7452--7523
29
2.4
28
82
11
81
41
23
23
11
1.86
7756--7802
24
1.9
25
86
4
69
40
10
19
29
1.85
8698--8739
17
2.6
16
92
7
75
50
21
7
21
1.72
16584--16767
91
2.0
92
95
1
334
26
22
7
44
1.78
18430--18467
19
2.0
20
89
5
60
50
0
0
50
1.00
21316--22024
43
16.5
42
76
10
503
49
7
18
24
1.73
21316--21982
85
7.7
85
78
9
540
49
7
18
24
1.73
21316--22024
128
5.5
129
78
8
581
49
7
18
24
1.73
21385--21982
264
2.3
261
82
5
701
48
7
19
24
1.74
22854--22896
22
2.0
22
100
0
86
58
9
4
27
1.49
22897--22940
21
2.1
21
91
0
70
38
11
0
50
1.39
23327--23370
13
3.5
13
87
6
63
20
50
15
13
1.78
23495--23529
12
2.9
12
95
0
61
28
51
11
8
1.67
28596--28634
14
2.8
14
84
0
51
35
28
12
23
1.91
31970--32000
16
1.9
16
93
0
53
32
0
9
58
1.31
43826--43862
6
6.5
6
96
3
60
0
16
54
29
1.43
43966--44094
21
6.2
20
73
12
109
26
21
20
31
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44002--44074
20
3.6
20
75
10
85
24
20
17
36
1.94
43980--44094
41
2.8
41
85
5
153
26
21
19
33
1.97
43968--44090
62
2.0
62
81
9
144
26
21
18
32
1.97
44512--44550
2
19.5
2
100
0
78
48
0
0
51
1.00
44824--44879
28
2.0
28
85
0
76
30
17
17
33
1.94
45334--45361
13
2.2
13
100
0
56
32
14
32
21
1.93
45467--45494
2
14.0
2
100
0
56
50
0
0
50
1.00
48128--48164
16
2.3
16
85
0
56
35
0
0
64
0.94
52775--52810
15
2.4
15
90
0
54
58
2
0
38
1.13
52839--52876
16
2.4
16
86
8
51
57
0
0
42
0.98
58838--59173
180
1.9
180
99
0
663
50
13
5
29
1.64
61843--61867
2
12.5
2
100
0
50
52
0
0
48
1.00
69479--69538
13
4.8
13
76
15
72
26
0
1
71
0.95
69479--69543
21
3.3
20
73
20
66
26
0
1
72
0.94
69481--69543
29
2.2
29
83
11
76
25
0
1
73
0.93
69483--69525
16
2.7
16
88
0
59
25
0
2
72
0.97
69800--69871
8
9.8
8
70
22
50
73
1
0
25
0.91
69795--69875
13
6.8
13
73
21
70
74
1
0
24
0.90
69790--69886
29
3.3
29
77
0
113
73
3
0
23
0.98
69790--69855
21
3.1
21
93
0
114
77
0
0
22
0.77
78599--78626
5
5.6
5
100
0
56
42
0
39
17
1.50
86170--86205
10
3.5
10
92
3
54
11
11
27
50
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
86868--87394
265
2.0
262
97
1
1000
38
18
15
27
1.91
89703--89737
7
5.0
7
92
0
61
45
0
0
54
0.99

Tables:   1

The End!